mRNA_P-wetherbeei_contig7626.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: D7FX24_ECTSI (Rab8C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX24_ECTSI) HSP 1 Score: 270 bits (691), Expect = 8.520e-82 Identity = 174/307 (56.68%), Postives = 204/307 (66.45%), Query Frame = 1
Query: 424 GGRRRSKPSE-KGGLSQRTLSIVTNLEVHKPKAKSRRXXXXXXXXXXXXXXXXXXXXXXXXXXESEAQFTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSEGREAANGNAGAAGGGGDARSR-KPVQTIFLTKRSTPSFRNRLGGGS 1338
GGRRRS P +GGLS++TL+IVTNL+ H +SR XXXXXXXXXXXXX + + TIRIL+LGDSGVGKTSLM RFSED FAP ++STAGVD+KVQ LDI+GKRVRCQIWDTAGQE+FHVITR YYRGAHGIAL YDVTD DS+KNVNYWMAN+QTHA+ R+ KM+LGNKVD+ + R IST+ GQDVA+E+G F+EVSAK+G GV DAFY LA IV G + G +GG RS +T FLT R +LGG S
Sbjct: 69 GGRRRSGPGNGRGGLSKKTLNIVTNLKSHTTDVRSREEMEDLEXXXXXXXXXXXXXENLRQKGD-DFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQTLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPG---------------------HRMQKMILGNKVDIED--RAISTKDGQDVAKEFGVRFFEVSAKNGYGVSDAFYSLAVDIVAANKRGADDRRGARLFSGGAARLRSSFASKKTSFLTGR-------KLGGVS 344
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A836C8W2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W2_9STRA) HSP 1 Score: 255 bits (651), Expect = 4.790e-78 Identity = 128/192 (66.67%), Postives = 150/192 (78.12%), Query Frame = 1
Query: 628 TIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSE 1203
TIRIL+LGDSGVGKTSLM R++EDHF+PN+LSTAGVDFKV+HLDI+G+RVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDV DADS+KNVNYW+AN+QTHA AG G I K++LGNKVDL HRE+S+ AG +V E+G ++EVSAKDG+GV+DAF LA IV L +
Sbjct: 2 TIRILLLGDSGVGKTSLMLRYTEDHFSPNLLSTAGVDFKVRHLDINGRRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVADADSFKNVNYWVANIQTHAPAAGREG-------------------ICKVLLGNKVDLPAEHREVSSAAGNEVGEEFGVRYFEVSAKDGTGVQDAFDTLAREIVEGLEQ 174
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A6H5JLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN2_9PHAE) HSP 1 Score: 214 bits (545), Expect = 4.930e-60 Identity = 127/209 (60.77%), Postives = 147/209 (70.33%), Query Frame = 1
Query: 427 GRRRSKPSE-KGGLSQRTLSIVTNLEVHKPKAKSRRXXXXXXXXXXXXXXXXXXXXXXXXXXESEAQFTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDL 1050
GRRRS P +GGLS++TL+IVTNL+ H +SR XXXXXXXXXX + + TIRIL+LGDSGVGKTSLM RFSED FAP ++STAGVD+KVQ LDI+GKRVRCQIWDTAGQE+FHVITR YYRGAHGIAL YDVTD DS+KNVNYWMAN+QTHA+ R+ KM+LGNKVD+
Sbjct: 226 GRRRSGPGNGRGGLSKKTLNIVTNLKSHTTDVRSREEMEDLEEEXXXXXXXXXXKENLRQKGD-DFDRTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQTLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPG---------------------HRMQKMILGNKVDI 412
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: W7U9Z1_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Z1_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.450e-56 Identity = 148/291 (50.86%), Postives = 188/291 (64.60%), Query Frame = 1
Query: 409 SPRRSGGRRRSKPSEK--GGLSQRTLSIVTNLEVHKP---KAKSRRXXXXXXXXXXXXXXXXXXXXXXXXXXESEAQFT----IRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDG--KRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGAL-FYEVSAKDGSGVRDAFYKLACTIVRRLSEGRE----AANGNAG 1233
SPR S + R++ S K GLSQ+TL+IV NL+ K + XXXXXXXXXXXXXXXXX S ++T IRIL+LGDSGVGKTSLM R+SE+ FAP +LSTAGVDFKV+HL ++ ++V+ QIWDTAGQE+ HVITR YY+G+HGIALVY++TD DS++NVNYWMAN+Q HA GD ++ K ++GNK DL + R IS + G +A+EYG + F+E SAK G+ V AF LA IVRR+ E + AA GN G
Sbjct: 23 SPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDXXXXXXXXXXXXXXXXXXXGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHA----------------------GD-KVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGG 288
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: U1GWA9_ENDPU (GTP-binding protein ypt2 n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GWA9_ENDPU) HSP 1 Score: 185 bits (470), Expect = 8.670e-52 Identity = 98/210 (46.67%), Postives = 133/210 (63.33%), Query Frame = 1
Query: 625 FTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRL--SEGREAANGNAGAAGGG 1248
F I++L++GDSGVGK+ + RFSED F P+ ++T G+DFK++ +D+DGKRV+ QIWDTAGQE+F IT AYYRGA GI LVYDVTD S+ N+ W +N++ HA + ++K+++GNK D E R +STQ GQD+A E F EVSAK + + AFY LA I +RL S ++A AGA+GGG
Sbjct: 9 FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIDLDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDRKSFDNIRTWFSNVEQHASEG-----------------------VNKILIGNKCDW-EEKRAVSTQQGQDLADELNIPFLEVSAKSNTNIEKAFYSLASDIKKRLVDSSRNDSAAQTAGASGGG 194
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A7S2SPF5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPF5_9STRA) HSP 1 Score: 192 bits (489), Expect = 1.560e-51 Identity = 96/199 (48.24%), Postives = 134/199 (67.34%), Query Frame = 1
Query: 625 FTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLD---IDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSEGRE 1212
+ +++L+LGDSGVGKTSLM RF+++ F PN++STAGVDFKV++L+ GKR++CQIWDTAGQE+FHVITR YYRG+HGIALVYDVT+ S++ +NYWM N++ HA K + ++ GNKVDL HR+++ + G+ A ++ ALFYE SAKDG+ V +AF L+ V + G +
Sbjct: 276 YHVKVLLLGDSGVGKTSLMLRFADNEFQPNLMSTAGVDFKVRYLENQKTKGKRIKCQIWDTAGQERFHVITRTYYRGSHGIALVYDVTNERSFEQINYWMNNIKNHAGKD-----------------------VFVVLFGNKVDL--PHRKVTYEQGKQAAAKHNALFYETSAKDGTNVLEAFEALSMNAVAIIESGMD 449
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A0G4LPV7_9PEZI (Uncharacterized protein n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4LPV7_9PEZI) HSP 1 Score: 185 bits (470), Expect = 1.200e-50 Identity = 96/214 (44.86%), Postives = 133/214 (62.15%), Query Frame = 1
Query: 610 ESEAQFTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSEGREAANGNAGAAGGGG 1251
E F I++L++GDSGVGK+ + RFSED F P+ ++T G+DFK++ +++DGKRV+ QIWDTAGQE+F IT AYYRGA GI LVYDVTD S+ N+ W AN++ HA + ++K+++GNK D E R +ST+ GQ +A E G F EVSAK + AFY LA I +RL + +++ G GA+GG G
Sbjct: 97 ERNYDFLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFANVEQHATEG-----------------------VNKILIGNKCDW-EDKRVVSTEQGQQLADELGIPFLEVSAKSNINIDKAFYSLAADIKKRLIDNQKSETGAGGASGGAG 286
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A175VY54_9PEZI (Ras-related protein Rab-8A n=2 Tax=Sordariales TaxID=5139 RepID=A0A175VY54_9PEZI) HSP 1 Score: 181 bits (459), Expect = 2.980e-50 Identity = 97/220 (44.09%), Postives = 135/220 (61.36%), Query Frame = 1
Query: 625 FTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSEGREAANGNAGAAG-----GGGDARSRK 1269
F I++L++GDSGVGK+ + RFSED F P+ ++T G+DFK++ +++DGKRV+ QIWDTAGQE+F IT AYYRGA GI LVYDVTD S+ N+ W AN++ HA + ++K+++GNK D E R +ST+ GQ +A E G F EVSAK + + AFY LA I +R+ + ++ G+AG G GGD S K
Sbjct: 10 FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFANVEQHATEG-----------------------VNKILIGNKCDW-EEKRVVSTERGQQLADELGIPFLEVSAKTNTNIDQAFYSLAADIKKRIIDTSKSEQGSAGQTGVNVGEKGGDGASGK 205
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A7E5WT58_TRINI (ras-related protein Rab-8A isoform X1 n=58 Tax=Ditrysia TaxID=37567 RepID=A0A7E5WT58_TRINI) HSP 1 Score: 181 bits (458), Expect = 4.720e-50 Identity = 96/223 (43.05%), Postives = 139/223 (62.33%), Query Frame = 1
Query: 625 FTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSEGREAANGNAGAAGGGGDARS---RKPVQTI 1284
+ ++L++GDSGVGKTS++ RFSED F + +ST G+DFK++ +D+DGK+V+ QIWDTAGQE+F IT AYYRG+ GI LVYDVT+ S++N+ W+ N++ +A + ++KM+LGNK DL EA R++S + G+ +A EY F E SAKD V AFY LA I ++ + ++ A+ AGA GG R+ RKP +
Sbjct: 7 YLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENAS-----------------------ADVEKMILGNKCDL-EAKRQVSKERGEQLAVEYQIKFIETSAKDSLNVESAFYTLARDIKAKMEKKQKEASNPAGARSGGHQLRNEPQRKPTSWL 205
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Match: A0A447CGC5_PODCO (GTP-binding protein n=6 Tax=Sordariomycetes TaxID=147550 RepID=A0A447CGC5_PODCO) HSP 1 Score: 180 bits (457), Expect = 5.840e-50 Identity = 93/207 (44.93%), Postives = 129/207 (62.32%), Query Frame = 1
Query: 625 FTIRILMLGDSGVGKTSLMHRFSEDHFAPNMLSTAGVDFKVQHLDIDGKRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVTDADSYKNVNYWMANLQTHADKAGVGGXXXXXXXXXXXXXXXGDSRIDKMVLGNKVDLGEAHREISTQAGQDVAREYGALFYEVSAKDGSGVRDAFYKLACTIVRRLSEGREAANGNAGAAGG 1245
F I++L++GDSGVGK+ + RFSED F P+ ++T G+DFK++ +++DGKRV+ QIWDTAGQE+F IT AYYRGA GI LVYDVTD S+ N+ W AN++ HA + ++K+++GNK D E R +ST+ GQ +A E G F EVSAK + AFY LA I +R+ + + G AGA+ G
Sbjct: 9 FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFANVEQHATEG-----------------------VNKILIGNKCDW-EEKRVVSTERGQALADELGIPFLEVSAKTNENIEKAFYSLAADIKKRIIDTSKTEQGGAGASTG 191 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7626.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7626.1.3 >prot_P-wetherbeei_contig7626.1.3 ID=prot_P-wetherbeei_contig7626.1.3|Name=mRNA_P-wetherbeei_contig7626.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=494bp MEQDNDDFLVPEVVVDLNAFSIADDADDAANEGCSSKEGVAGREDAADPGback to top mRNA from alignment at P-wetherbeei_contig7626:2..2969- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7626.1.3 ID=mRNA_P-wetherbeei_contig7626.1.3|Name=mRNA_P-wetherbeei_contig7626.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2968bp|location=Sequence derived from alignment at P-wetherbeei_contig7626:2..2969- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7626:2..2969- >mRNA_P-wetherbeei_contig7626.1.3 ID=mRNA_P-wetherbeei_contig7626.1.3|Name=mRNA_P-wetherbeei_contig7626.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1482bp|location=Sequence derived from alignment at P-wetherbeei_contig7626:2..2969- (Phaeothamnion wetherbeei SAG_119_79)back to top |