mRNA_P-wetherbeei_contig7612.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7612.1.1
Unique NamemRNA_P-wetherbeei_contig7612.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7612.1.1 vs. uniprot
Match: A0A835ZDH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.040e-10
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 PYYASPIFSFERGAGIRRFNLPRPAVFLGGCVV-VRLVGKAQRQTLGPQEGDFADSFYTCVAHVALRGADVSGE 222
            PYY S  F+ +    ++ F LP+PA+FLGG    + L GK QRQTLGP  G   D FYTC++ VA+ GA +S +
Sbjct:  257 PYYTSVAFAIKPAMQLQTFELPKPAIFLGGGEARLELAGKQQRQTLGPDAGVMHDHFYTCLSFVAIYGASLSSD 330
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BLAST of mRNA_P-wetherbeei_contig7612.1.1 vs. uniprot
Match: A0A7S2UTS0_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTS0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.840e-8
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    7 YYASPIFSFERGAGIRRFNLPRPAVFLGGCVVVRLVGKAQRQTLGPQEGDFADSFYTCVAHVALRG 204
            YY SP+ + + G   + F LP+P +F+GG VV+ L+G+AQRQTLG       D FYTC++H  + G
Sbjct:   99 YYCSPVCTMDNGMKAQEFALPKPTLFVGGRVVLLLLGRAQRQTLGAD----MDDFYTCISHFWMCG 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7612.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZDH8_9STRA5.040e-1047.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UTS0_9STRA2.840e-845.45Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7612contigP-wetherbeei_contig7612:4..1449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4096.XP_009763905.1
PFAMsF-box-like
Model size1448
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.9e-05
EggNOG OGs28J3Z@1|root,2QRFZ@2759|Eukaryota,37KCT@33090|Viridiplantae,3GD9V@35493|Streptophyta,44H4V@71274|asterids
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_006260.1
DescriptionF-box protein At4g00755-like
Cds size600
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.2052262-CDS-P-wetherbeei_contig7612:3..6031683186991.2052262-CDS-P-wetherbeei_contig7612:3..603Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7612 4..603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.2191336-UTR-P-wetherbeei_contig7612:603..14491683186991.2191336-UTR-P-wetherbeei_contig7612:603..1449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7612 604..1449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7612.1.1prot_P-wetherbeei_contig7612.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7612 4..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7612.1.1

>prot_P-wetherbeei_contig7612.1.1 ID=prot_P-wetherbeei_contig7612.1.1|Name=mRNA_P-wetherbeei_contig7612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
APYYASPIFSFERGAGIRRFNLPRPAVFLGGCVVVRLVGKAQRQTLGPQE
GDFADSFYTCVAHVALRGADVSGEDGFVFRPAAASAAAALVAGPAGAASA
PAAGQFEVRAGCCADITGPATADWRAADLLGELLSLPPSQGHFAASEADA
AAGFADAGAGEDVAGVAGADVAGHAVAGAAATGQSFTHSIVTWLNGSMA*
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mRNA from alignment at P-wetherbeei_contig7612:4..1449+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7612.1.1 ID=mRNA_P-wetherbeei_contig7612.1.1|Name=mRNA_P-wetherbeei_contig7612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig7612:4..1449+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGTACTACGCATCGCCGATCTTTTCCTTCGAACGGGGCGCCGGCAT
CCGCCGCTTCAACCTGCCCCGGCCCGCCGTGTTCCTCGGCGGGTGCGTCG
TCGTGCGTCTGGTCGGCAAGGCGCAGCGGCAGACGCTTGGCCCGCAAGAG
GGCGACTTTGCCGACTCCTTCTACACGTGCGTCGCACACGTTGCACTCCG
CGGCGCCGACGTTTCCGGCGAGGACGGCTTCGTCTTTCGCCCGGCGGCGG
CTTCGGCGGCGGCGGCGCTGGTGGCGGGACCGGCGGGCGCTGCTAGCGCG
CCGGCGGCCGGACAGTTTGAGGTCCGCGCGGGCTGCTGCGCCGACATCAC
CGGACCCGCCACAGCGGATTGGCGGGCAGCGGACTTGCTGGGCGAGCTAT
TGAGCTTGCCGCCTTCTCAGGGCCACTTCGCCGCCTCCGAAGCCGACGCG
GCCGCTGGCTTCGCCGACGCCGGCGCCGGCGAAGATGTGGCTGGGGTCGC
TGGGGCCGATGTTGCTGGGCACGCTGTTGCTGGGGCCGCTGCTACAGGGC
AATCCTTTACCCATTCCATCGTTACCTGGCTGAACGGCTCTATGGCCTAA
AGAAAGACAACGCTGTCGATCACATCAGCAGTTCGGCCGCAGTTGCGCCA
GCCGCTGCGGTGATGCTGTGCCACTGACATTAGCTGTGGCGGCGGCGGCG
TTGCGACCAGCTAGCGAGTAAACAAGACGGCAACGTCCGGCGGGATAATT
GTACTCGCAAAAAAGGGCAGAAGCCCCGCAGCGCCGTGCTCTACCTTTGG
AGTGGCACAAAAGCGTTGGTGTATAAGGGAAATGTTTGCCGTGATGGGGT
GGCGGCTCTGGACGAAGCTACCAGGTGCAAAGAATGAAAGTCGCACGAAG
AGACAGAGGCGCGCGCCGTCAGCTGTCATGGCGCCGCCGCCCATCGCTTA
ATGGCGGCAGTTTTGCGGCAGCCGTTTTGCACTGCGTGTCCCTTCCAACG
AGGATATGGGGACGCTGAAACAGAGCGCCGGCGGTGGGTCGCTACGGGGC
GCCATACCGGCCCGTGCGACGGCCTAATTGGTGCCGGGCCGTATCCTGTG
TGTTCCATCGTCATGTGTCTCGTTGCAGCCAGCTGGCCTGTAAAGAGGCT
GGAAGAACTTTGGCGCTGCGGTTATCGTAGCGAGCCGGACCGCCTCCAGC
TCTTTCGGGGCGTGGCGGAGGGGTAGGTCTTTGGACCGGACCTGTCAAAA
TAATGTGGACAGAGATCAGTACGCGCCGACAACCAGAGACCGGTGTCATG
TGCAGAGGGCGGCGGGCCAAGAGGCAAAACACCGTTGTAGAGTAAATGAC
GAGTGGCGCACAAAACAGGAATTCATGCTCGCCATCATCGGCTTGGGAAT
GTCCGCAAAAGAGATGGAGCTTCAAAGCTCTAACCGTTCTTTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7612:4..1449+

>mRNA_P-wetherbeei_contig7612.1.1 ID=mRNA_P-wetherbeei_contig7612.1.1|Name=mRNA_P-wetherbeei_contig7612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig7612:4..1449+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGTACTACGCATCGCCGATCTTTTCCTTCGAACGGGGCGCCGGCAT
CCGCCGCTTCAACCTGCCCCGGCCCGCCGTGTTCCTCGGCGGGTGCGTCG
TCGTGCGTCTGGTCGGCAAGGCGCAGCGGCAGACGCTTGGCCCGCAAGAG
GGCGACTTTGCCGACTCCTTCTACACGTGCGTCGCACACGTTGCACTCCG
CGGCGCCGACGTTTCCGGCGAGGACGGCTTCGTCTTTCGCCCGGCGGCGG
CTTCGGCGGCGGCGGCGCTGGTGGCGGGACCGGCGGGCGCTGCTAGCGCG
CCGGCGGCCGGACAGTTTGAGGTCCGCGCGGGCTGCTGCGCCGACATCAC
CGGACCCGCCACAGCGGATTGGCGGGCAGCGGACTTGCTGGGCGAGCTAT
TGAGCTTGCCGCCTTCTCAGGGCCACTTCGCCGCCTCCGAAGCCGACGCG
GCCGCTGGCTTCGCCGACGCCGGCGCCGGCGAAGATGTGGCTGGGGTCGC
TGGGGCCGATGTTGCTGGGCACGCTGTTGCTGGGGCCGCTGCTACAGGGC
AATCCTTTACCCATTCCATCGTTACCTGGCTGAACGGCTCTATGGCCTAA
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