mRNA_P-wetherbeei_contig7585.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7585.1.1
Unique NamemRNA_P-wetherbeei_contig7585.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A835ZHE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 9.390e-48
Identity = 109/198 (55.05%), Postives = 132/198 (66.67%), Query Frame = 1
Query:  100 AFVPCVSIAAVGSATLAGYAIVSSPPQASWWHLARRPA-----NCRASPKM--MARGGRFRPDRGESKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVSS--STGGGGVGGSD 666
            AF  C ++ A   A +A  A  S+ P A+   LA          CRAS     M R  RF+  R ESKRQAR++QL+TAELASIIR GH VK +  L+D +RSKIS+VDV +SPDLR AR+ VSVYG+ LEKREAY W VRN   IR AL+  L+DMK VPEL F+QTD+GAAVDVM LI +V+S  +T  G VGG D
Sbjct:    3 AFAVCAALLAGAPAAVAFLAPASARPAATTTCLAPTQTASATHTCRASRTQLRMGRANRFKAARPESKRQARISQLLTAELASIIRLGHHVKGSKALSDELRSKISIVDVNVSPDLRNARIFVSVYGDRLEKREAYGWCVRNTGGIRFALSQRLKDMKGVPELTFQQTDIGAAVDVMHLIGKVNSGSTTESGMVGGFD 200          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: D8LBD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD9_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.680e-46
Identity = 87/132 (65.91%), Postives = 106/132 (80.30%), Query Frame = 1
Query:  235 MMARGGRFRPDRGESKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVS 630
            MMARG  FR    ESKRQARV+QL+T ELA I+R GH +KT D++ D VR +I+VVDV MSPDLR+A+V +SVYG+VLEKREAYAW V+N + IR AL + L+ MK VPELFF+ TD+ AAVD+MALIDRVS
Sbjct:   72 MMARGSTFRSTT-ESKRQARVSQLLTGELAKILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVS 202          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A7S2DN30_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN30_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.260e-33
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = 1
Query:  238 MARGGRFRPDRGESKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVSSSTGGGGVGGSDGGYGDGHGAGPTGVIDGLDFD 729
            M+RG      R ESKRQ RV+Q++ +E+ +I+RRG       ++ D +R KIS+VDV MSPDLRTA+V VSV+G+++++R+AY+WLV N++ I+ +LA +L  MK+VP+L+F++TD+ AAVDVM  I+ + +                     P GVI GLDFD
Sbjct:   45 MSRGNAVSKGR-ESKRQGRVSQVIRSEIVTILRRGSMKYMKKDIGDTLRQKISIVDVHMSPDLRTAKVYVSVFGDIVDRRQAYSWLVMNSKAIKHSLAQSLSAMKTVPDLYFKETDLAAAVDVMTTIESIHAEASNL----------------PRGVIQGLDFD 191          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A7S2SUM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.810e-28
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  268 RGESKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVS 630
            R ESKRQARVAQLV AEL+ +IR+G    T   + +  R KIS+VDV MSPDLR A+V VSV+ +  E R+AYAWLV+++   R  L+  LR M+SVP L FR+ DV  AVDVM  ID ++
Sbjct:   64 RDESKRQARVAQLVRAELSQVIRQGTRANTKG-ITEATRQKISIVDVHMSPDLRNAKVFVSVFASGPESRQAYAWLVQSSGAFRHELSQELRHMRSVPALTFRRADVAEAVDVMVAIDNLN 183          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A1Z5KIK3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIK3_FISSO)

HSP 1 Score: 115 bits (287), Expect = 3.920e-28
Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  277 SKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGNV------LEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVSSSTGGGGVGGSDGGYGDGHGAGPTGVIDGLDFD 729
            SKRQ RV QLV  EL  I+ +G A + A+ L   +R +ISVV   +SPDLR AR+ +SV  ++      ++KR AYAWLV NA+P+R AL+  L  MKS PEL F Q DV AAVDVM LID++SS        G+D   G   G  P+G++ G+DFD
Sbjct:   11 SKRQERVGQLVRTELGKILHQGSASR-AEFLDADLRQRISVVKADVSPDLRQARISISVSASLAREDTAMDKRRAYAWLVNNAKPLRHALSQKLSHMKSCPELKFVQVDVAAAVDVMYLIDKISS--------GNDKRSGSLLGESPSGIMGGVDFD 158          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A7R9W0U4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0U4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.360e-27
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  277 SKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYG----NVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVS 630
            SKRQ RV  +V +ELA II+ G  +K  D + D +R +I+VV+  +SPDLR ARV VS+ G    + ++KR AY+WLVR+ + IR A+A  L+ MK  P+L F Q DVGAAVDVM LI++VS
Sbjct:   55 SKRQERVGHVVRSELARIIQAGFPIKNVDPIDDELRRRINVVNADVSPDLRHARVTVSIIGRGETSTVDKRRAYSWLVRSTKMIRHAMAQRLKHMKVCPDLKFVQADVGAAVDVMRLIEKVS 176          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: B7FY13_PHATC (Chitinase glycoside hydrolase family 18, ribosome-binding factor n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FY13_PHATC)

HSP 1 Score: 112 bits (281), Expect = 1.410e-26
Identity = 83/185 (44.86%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  277 SKRQARVAQLVTAELASIIRRGHAVK--TADELADHVRSKISVVDVLMSPDLRTARVLVSV----------YGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVSSSTGGGGVGGSDGGYG-------DGHGAGPTGVIDGLDFDAAFDGNDEEDDDVGF 774
            SKRQ RV  LV  E+++I+  G  +K   A+ L   +R +ISVV   +SPDLR AR+ VSV          Y   ++KR AYAWLVRN +PIR  LA  +  MKS P L F Q DV AAVDVM LID+VS             GY        +G    PTGV+DG+DFD  FD  D ++DD  F
Sbjct:   69 SKRQERVGHLVRTEISNILH-GGVIKGQDAEYLDAELRQRISVVSADISPDLRQARISVSVRAPPRNDQAEYNPAVDKRRAYAWLVRNTKPIRHTLAQRMSHMKSCPNLSFVQVDVAAAVDVMYLIDKVSQ------------GYKRDKVDLFNGENV-PTGVMDGIDFDEEFDEEDWDEDDEDF 239          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A7S2UPV8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPV8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.570e-26
Identity = 74/164 (45.12%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  277 SKRQARVAQLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGN--------VLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVSSSTGGGGVGGSDGGYGDGHGAGPTGVIDGLDFDAAFDG 744
            SKRQ RV  LV AE++SI+   H +K +D L   +R +ISVV+V +SPDL  AR+ VS+ G         V+++R AY+WLVR+ + IR ALA  L  MK VP L F   DVGAAVDVM LI++V+             GY       PTG++ G+DFD   DG
Sbjct:   63 SKRQERVGHLVRAEISSILTLSHEIKHSDYLEGELRKRISVVNVDVSPDLAQARITVSLVGGNHDTKEDAVVDQRRAYSWLVRSTKMIRHALAQRLSHMKGVPNLTFVLADVGAAVDVMQLIEKVAK------------GYKREDLDDPTGMVMGMDFDDDDDG 214          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A7S2NYX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYX9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.380e-25
Identity = 68/145 (46.90%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  235 MMARGGRFRPDRGESKRQARVAQLVTAELASIIRRGHAVKTAD-ELADHVRSKISVVDVLMSPDLRTARVLVSVYGN------------VLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVS 630
            M+ R  R   +  +SKRQ RV QLV +E+ASII+ GH +K  D  L   +R +ISVV+  +SPDLR AR+ VSV               V+EKR AY+WLV++ + IR ALA  L  MK++P L F Q DVGAAVDVM  I+ ++
Sbjct:   53 MIQRSNRRTANIDKSKRQFRVGQLVRSEIASIIKLGHEIKHTDGSLDSDLRLRISVVNADVSPDLRQARITVSVISKPNTDETAKLSDTVVEKRVAYSWLVKHTKNIRHALAQRLSHMKTIPNLTFAQADVGAAVDVMNKINNIN 197          
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Match: A0A7S4A318_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A318_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.920e-23
Identity = 64/129 (49.61%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  250 GRFRPDRGES-KRQARVAQLVTAELASIIRRGHA-VKTADELADHVRSKISVVDVLMSPDLRTARVLVSVYGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAVDVMALIDRVS 630
            G  R + GE+ +RQARVAQ V +ELA +IR G   VK+   +   V    SVVDV +SPDLR A   V+  G+  +KREA++WLV NA+  R ALA  LR  K VPE+ FR+ DVG AV +M LID  +
Sbjct:   39 GNRRAETGEATRRQARVAQQVRSELAILIRDGATRVKSTARVDPAVLRATSVVDVTVSPDLRAATATVTTRGDAAQKREAFSWLVANAKGFRYALAQRLRHSKRVPEVTFRKADVGGAVALMRLIDEAN 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7585.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHE8_9STRA9.390e-4855.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LBD9_ECTSI2.680e-4665.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2DN30_9STRA3.260e-3344.51Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2SUM5_9STRA1.810e-2854.55Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KIK3_FISSO3.920e-2848.41Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9W0U4_9STRA9.360e-2751.64Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B7FY13_PHATC1.410e-2644.86Chitinase glycoside hydrolase family 18, ribosome-... [more]
A0A7S2UPV8_9STRA5.570e-2645.12Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2NYX9_9STRA5.380e-2546.90Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4A318_9STRA2.920e-2349.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7585contigP-wetherbeei_contig7585:2088..2861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBD9
PFAMsRBFA
Model size774
Max annot lvl2759|Eukaryota
KEGG koko:K02834
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.4e-47
EggNOG OGs2CYHW@1|root,2S4H5@2759|Eukaryota
DescriptionRibosome-binding factor A
Cds size774
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.6887674-CDS-P-wetherbeei_contig7585:2087..28611683186989.6887674-CDS-P-wetherbeei_contig7585:2087..2861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7585 2088..2861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7585.1.1prot_P-wetherbeei_contig7585.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7585 2088..2861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7585.1.1

>prot_P-wetherbeei_contig7585.1.1 ID=prot_P-wetherbeei_contig7585.1.1|Name=mRNA_P-wetherbeei_contig7585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MPKANTIQSGRKRKAPLSALAVAIAVALPSRSSAFVPCVSIAAVGSATLA
GYAIVSSPPQASWWHLARRPANCRASPKMMARGGRFRPDRGESKRQARVA
QLVTAELASIIRRGHAVKTADELADHVRSKISVVDVLMSPDLRTARVLVS
VYGNVLEKREAYAWLVRNARPIRGALASNLRDMKSVPELFFRQTDVGAAV
DVMALIDRVSSSTGGGGVGGSDGGYGDGHGAGPTGVIDGLDFDAAFDGND
EEDDDVGF
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mRNA from alignment at P-wetherbeei_contig7585:2088..2861-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7585.1.1 ID=mRNA_P-wetherbeei_contig7585.1.1|Name=mRNA_P-wetherbeei_contig7585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig7585:2088..2861- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAAAGCAAACACGATTCAAAGCGGAAGGAAGCGCAAGGCGCCGCT CTCGGCGCTGGCTGTAGCCATCGCTGTGGCCTTGCCGAGCCGTTCAAGCG CGTTTGTGCCCTGCGTTTCTATTGCAGCTGTGGGCTCGGCGACTCTAGCT GGATACGCCATCGTGTCATCGCCGCCGCAGGCGTCGTGGTGGCACCTCGC ACGAAGGCCAGCGAACTGCCGTGCGTCGCCGAAAATGATGGCGCGCGGCG GCCGCTTCCGGCCCGACCGCGGCGAGTCGAAGCGCCAGGCGCGCGTGGCG CAGCTCGTCACGGCGGAACTCGCGAGCATCATCCGCCGCGGCCACGCCGT CAAGACGGCCGACGAGCTCGCGGACCACGTGCGCAGCAAGATCTCCGTCG TCGACGTGCTCATGTCGCCGGACCTCCGTACGGCGCGGGTCCTGGTCTCT GTCTACGGCAACGTCCTCGAGAAGCGCGAGGCGTACGCCTGGCTCGTGCG CAACGCGCGGCCGATCCGGGGTGCGCTCGCCAGCAACCTGCGGGACATGA AGAGCGTGCCGGAGCTCTTCTTCCGGCAGACAGATGTGGGCGCCGCCGTC GACGTCATGGCCCTCATCGACCGCGTATCCTCTTCCACCGGCGGCGGCGG CGTTGGCGGCTCCGACGGCGGTTACGGCGACGGTCACGGCGCGGGGCCGA CTGGCGTCATCGACGGCCTGGACTTTGATGCAGCGTTCGACGGCAACGAC GAGGAGGATGACGACGTTGGTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7585:2088..2861-

>mRNA_P-wetherbeei_contig7585.1.1 ID=mRNA_P-wetherbeei_contig7585.1.1|Name=mRNA_P-wetherbeei_contig7585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig7585:2088..2861- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAAAGCAAACACGATTCAAAGCGGAAGGAAGCGCAAGGCGCCGCT
CTCGGCGCTGGCTGTAGCCATCGCTGTGGCCTTGCCGAGCCGTTCAAGCG
CGTTTGTGCCCTGCGTTTCTATTGCAGCTGTGGGCTCGGCGACTCTAGCT
GGATACGCCATCGTGTCATCGCCGCCGCAGGCGTCGTGGTGGCACCTCGC
ACGAAGGCCAGCGAACTGCCGTGCGTCGCCGAAAATGATGGCGCGCGGCG
GCCGCTTCCGGCCCGACCGCGGCGAGTCGAAGCGCCAGGCGCGCGTGGCG
CAGCTCGTCACGGCGGAACTCGCGAGCATCATCCGCCGCGGCCACGCCGT
CAAGACGGCCGACGAGCTCGCGGACCACGTGCGCAGCAAGATCTCCGTCG
TCGACGTGCTCATGTCGCCGGACCTCCGTACGGCGCGGGTCCTGGTCTCT
GTCTACGGCAACGTCCTCGAGAAGCGCGAGGCGTACGCCTGGCTCGTGCG
CAACGCGCGGCCGATCCGGGGTGCGCTCGCCAGCAACCTGCGGGACATGA
AGAGCGTGCCGGAGCTCTTCTTCCGGCAGACAGATGTGGGCGCCGCCGTC
GACGTCATGGCCCTCATCGACCGCGTATCCTCTTCCACCGGCGGCGGCGG
CGTTGGCGGCTCCGACGGCGGTTACGGCGACGGTCACGGCGCGGGGCCGA
CTGGCGTCATCGACGGCCTGGACTTTGATGCAGCGTTCGACGGCAACGAC
GAGGAGGATGACGACGTTGGTTTT
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