mRNA_P-wetherbeei_contig7582.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7582.2.1
Unique NamemRNA_P-wetherbeei_contig7582.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: D7FT86_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT86_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 5.430e-43
Identity = 102/233 (43.78%), Postives = 137/233 (58.80%), Query Frame = 2
Query:  479 MQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEP-TLLGGKVDRSMLVDSATLIATRQ-VKDEEVFIDYRLNPDLADKLPTWYVPADPQAARRRWAEGADAEDDAAAASPSPSR*RQRS 1171
            ++ E GF   VK ST  GAGLGLFV+G+AP GAV+ ++PGLVHLPE L+   Y + ++  D D  L+ R D  ++D R A   P S    AH ANHPP G +A  + V+YD P  +    G A    +   FPE LR  VPNRY   P  L GGK+D+S +V++  L+A R  + D+EVF+DYR NP++  + P WY P DP+A    WA   D +D  A    + S  R+RS
Sbjct:  161 LRSELGFNTVVKDSTLSGAGLGLFVEGSAPEGAVVAIYPGLVHLPEHLRSQKYAASLLP-DEDHFLMGRADGCLVDGRTAGLLPSSPLTFAHAANHPPEGQAANVLQVAYDFPALSEDDVGIA----KGGRFPERLRPLVPNRYHRAPKALFGGKLDQSAMVETVVLVACRGGLHDQEVFMDYRFNPNM--RHPDWYSPVDPEATAEMWA--VDKQDSTAQTLLNNSWFRRRS 384          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: A0A835ZBE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.090e-37
Identity = 99/277 (35.74%), Postives = 151/277 (54.51%), Query Frame = 2
Query:  218 ALIEEVSKLSVDEQARAVQRNVNLQVVSCFAALERWHRNPEGLAA-----AERRIRTLEASAADRYEAGLPGAGAASRQSHVEAAEDAAARAMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVW---ALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKDEEVFIDYR 1024
            A   EVS LS+      +Q ++N Q+V    A+++ HR    L A     A    R   ASAA  Y      +G A+ ++ ++       R ++   G+ + +KPS   GAGLGL+V+G AP+G+V+GLF GLV+ P+ ++ P+Y + +   D +  L+ RYD ++ID R   KT    W    +A MANHPP G     M V+YD P   G     +        +P  LR +VPN+Y   PT  GGK+D +++++S  L+AT  ++DEEVF++YR
Sbjct:   26 ATFNEVSALSLHTLKARLQGDINTQIVDIAKAIDKVHRGGAQLHAIDPAHANEAKRAAIASAAGVYLDQWSTSGGAAMKALLQ-------RELRATLGYSVALKPSRLKGAGLGLWVEGYAPTGSVIGLFSGLVYAPQYVRRPEYQAELFPDD-NMQLIMRYDNYIIDGR---KTQGCNWHPLGVASMANHPPEGRLPNVMQVAYDYPTEVG-----STAATTRTTYPAELRPYVPNQYRAVPTFWGGKIDSTVMMESMVLVATTDLQDEEVFMNYR 286          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: W7TPU3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPU3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.810e-32
Identity = 87/226 (38.50%), Postives = 131/226 (57.96%), Query Frame = 2
Query:  446 VEAAEDAAAR-----AMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKD-EEVFIDYRLNPDL-ADKLPTWYVPADPQAARRRWA 1102
            +E+A ++A R     +++ + GF +   PS+   AG G+F++G A  G+++G++PGLV+LPE L+  +  + +   D D  L  RYD  V+D R A K P + +ALAH+ NH    G    M V+YD P      GG          FP  LR ++PN +A   +LLG   D+S L+ S  L+AT  ++D EE+F++YRLNP   ++ LP WYVP D +  +RRWA
Sbjct:  145 MESARESARRGRVFKSLRQDLGFTLCHGPSSILSAGRGVFLEGRARIGSLVGIYPGLVYLPEHLRKAEEVAELFP-DPDIFLFQRYDKIVVDGRAAEKMPHNEYALAHLCNH----GKPNVMAVAYDFPQDPLGWGG----------FPHELRPYIPNAFARPRSLLGSP-DQSALIQSVVLVATTDLEDGEELFLNYRLNPKHGSESLPPWYVPVDAKEDQRRWA 354          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: A0A7S2MLJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MLJ1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.260e-29
Identity = 102/371 (27.49%), Postives = 174/371 (46.90%), Query Frame = 2
Query:   53 RRVVSLITGKRPNSDKSYQRAADTGLAWLLTTHYR-RCYEANCLLNLDAPGAPDPGALIEEVSKLSVDEQARAVQRNVNLQVVSCFAALERWHRNPEGLAAAERRIRTLEASAADRYEAGLPGAGAASRQSHVEAAEDAAARAMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCR------------------YAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPL-ATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKDEEVFIDYRLNPDLADKLPTWYVPADPQAARRRWAE 1105
            RR + L+T     + K+ Q AAD   A+ L+  Y  R Y++                +  E  K+S+D Q   +Q+N+  Q+      L+  + + E +   E + ++++    D      P    A + +   A +    +++ +  GF   ++ S+  GAG G+++DG A  G+V+G++PG ++  + L   +   + +  D D+M+  R D  ++D R                  Y A+ P   + + HM NHPP G S  A+ V YD P  A G   GG           + L   +PN YA+ P+LL G     + + SA ++A R +++EEVF+DYRL+P+     P+WY P D     RRW++
Sbjct:    7 RRSLQLVT-----TPKTEQEAADVSRAFALSLSYSGREYDS----------------VNREGGKVSIDHQKTTLQKNLTEQICRLLGTLQ--YTSEEVI---ELQSKSIQQEVKDPNS--FPLFSVAPKNTDSSAIDSVVRQSIHERIGFAPWIRTSSILGAGRGVWIDGKAKEGSVIGIYPGFIYQLKDLATNESILKSLYPDDDYMMYCRSDGVLLDGRGRIPSELLNSNPALKSVHYPAENP---FGIGHMCNHPPQGVSPNALVVPYDFPTKAFGDSTGGL--------LTDELLEEIPNAYALRPSLLRGTFSVKIRLHSALVLANRSLENEEVFVDYRLSPNFP--RPSWYHPVDASEEHRRWSD 336          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: K3W6Z4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Z4_GLOUD)

HSP 1 Score: 121 bits (303), Expect = 2.730e-27
Identity = 95/334 (28.44%), Postives = 150/334 (44.91%), Query Frame = 2
Query:   98 KSYQRAADTGLAWLLTTHYRRCYEANCLLNLDAPGAPDPGALIEEVSKLSVDEQARAVQRNVNLQVVSCFAALERWHRNPEGLAAAERRIRTLEASAADRYEAGLPGAGAASRQSHVEAAEDAAARAMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKDEEVFIDYRLNPDLADKLPTWYVPADPQAARRRW 1099
            + +Q  AD G+A +L+     CY    L +       D G L EE   +   ++    +  V  Q+ + F A+ +  R PE          T+  S  +R +                + +  A   ++   G+ +RV+ S+   AG G+ V G  P G+++ LFPG+V++PE  K P Y   +  +       AR+D  VID +  + TPR+  A+AH  NHPPAG     +  S+D P           E+P   A  E L   +PN +   P+       +  LV     IAT  ++DEE+F++YR NP   + LP WY P D ++ +  W
Sbjct:   19 RRFQEEADVGVAAVLS-----CYRG--LRSQTTNADKDNGELFEEAVAIIQKKKFEQQKAYVQDQLQTAFDAILKLPRGPET------STPTISLSGFERID-------------DASSDKQRAGNTLESLLGYSLRVETSSIPNAGEGVKVKGKVPIGSLVALFPGIVYVPEHFKKPQYLQEISNNP---YARARFDSVVIDAKRESSTPRNPLAVAHKINHPPAGSKPNVIPFSFDFP----------PEQPFTQAEYEKL---IPNSFVEMPSRWS-MFGKRALVHGLAFIATADIEDEELFLNYRYNPH--NPLPEWYTPVDLESDQGMW 307          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: A0A5D6XP15_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP15_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.170e-26
Identity = 104/332 (31.33%), Postives = 151/332 (45.48%), Query Frame = 2
Query:  116 ADTGLAWLLTTHYRRCYEANCLLNLDAPGAPDPGALIEE----VSKLSVDEQARAVQRNVNLQVVSCFAALERWHRNPEGLAAAERRIRTLEASAADRYEAGLPGAGAASRQSHVEAAEDAAARAMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKDEEVFIDYRLNPDLADKLPTWYVPADPQAARRRW 1099
            AD G+A +L+     CY    L   +A    D G L EE    + K   ++Q   VQ  V  Q+ + F A+ +     E     + R RTL  S  +      P              +DA    ++   GF + V+ S+   AG G+ + G AP G+V+ LFPG V+LPE  K   +   +  SD  +   AR+D  VID +  + +PR+  A+AH  NHPPAG     M  S+D P           EEP   A      R +PN +   P+       +  LV     IAT  ++DEE+F++YR NP+  + LP WY P D ++ R  W
Sbjct:   29 ADVGVAAVLS-----CYRGLRLQTTNAD--KDNGELFEEAVATIQKQKFEQQKVYVQSQVAAQLETAFEAILKLPNAAEQ----DERARTLSLSGFESLNETSP-------------TQDAG-NTLEKLLGFSLHVEASSIATAGDGVKLLGKAPIGSVVALFPGTVYLPEHFKKVQHLREI--SDNPYAR-ARFDSVVIDAKRESSSPRNPLAVAHKINHPPAGAKPNVMPFSFDFP----------PEEPFTRA---EFERLIPNSFVEMPSRWS-MFGKRALVHGLAFIATADIEDEELFLNYRYNPN--NPLPEWYTPVDIESDREMW 316          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: A0A3F2S190_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S190_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.760e-26
Identity = 106/359 (29.53%), Postives = 167/359 (46.52%), Query Frame = 2
Query:   44 TAWRRVVSLITGKRPNSDKSYQRAADTGLAWLLTTHYRRCYEANCLLNLDAPGAP-DPGALIEE----VSKLSVDEQARAVQRNVNLQVVSCFAALERWHRNPEGLAAAERRIRTLEASAADRY-EAGLPGAGAASRQSHVEAAEDAAARAMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKD-EEVFIDYRLNPDLADKLPTWYVPADPQAARRRW 1099
            T W+R+   + G  P   + +Q  AD G+A +L+     C+     L LD   A  DP  L +E    V K   ++Q   VQ  ++ Q+   F A+ +          AE+ +  +  S  +R  E G            +  ++D      Q  FGF + V  S+   A  G+ + G+A  G+++ L+PG+V+LPE  K  +Y   +  S+  F   AR+D  +ID +  + TPR+  A+AH  NHPP+G     +   ++ P           EEP      +AL   +PNR+  EP+ L     +  +V     IAT  ++D EE+F++YR NPD    LP WY P D ++ R  W
Sbjct:    3 TVWQRIQLRLAGTTPA--RRFQEEADVGVAAVLS-----CFRG---LKLDLQNADKDPSELFDEAVGVVGKKKFEKQKEYVQNEISKQLQENFEAVLKMPSE------AEKNLPKMSLSGFERTSEVG----------DKLGISDD-----FQKLFGFTLDVAESSVSEAEEGVKLRGSASIGSLMALYPGVVYLPEHYKKNEYMKEI--SNNPFAR-ARFDSVIIDAKNESSTPRNPLAVAHKINHPPSGTPPNVLAFGFEFP----------PEEPFTTEEYDAL---IPNRFVKEPSRLS-MFGKRTIVHGLAFIATANIEDDEELFLNYRYNPDRP--LPKWYTPVDIESDRAMW 311          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: A0A8K1CCH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCH4_PYTOL)

HSP 1 Score: 114 bits (286), Expect = 4.900e-25
Identity = 71/208 (34.13%), Postives = 109/208 (52.40%), Query Frame = 2
Query:  479 MQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKD-EEVFIDYRLNPDLADKLPTWYVPADPQAARRRW 1099
            +++  G+ ++V+ S+   AG G+ + G  P G+++ LFPG V+LPE  K P Y   V     +    AR+D  +ID +    +PR+  A+AH  NHPPAG S   M  SYD P           EEP  D  P+  ++++PN +   P+ +     +  LV     I T  ++D EE+F++YR NPD  ++LP WY   D  + R  W
Sbjct:  108 VRELLGYSLKVEASSVPNAGEGVKIQGRLPIGSLVALFPGAVYLPEHFKKPQYLREV---SNNVYARARFDSIIIDAKNETPSPRNPLAVAHKINHPPAGSSPNVMPFSYDFP----------PEEPFTD--PD-YQQFIPNSFVEMPSRIS-MFGKRALVHGLAFITTADIEDGEELFLNYRYNPD--NELPEWYTSVDADSDRAMW 296          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: A0A225X425_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225X425_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.000e-24
Identity = 101/358 (28.21%), Postives = 166/358 (46.37%), Query Frame = 2
Query:   44 TAWRRVVSLITGKRPNSDKSYQRAADTGLAWLLTTHYRRCYEANCLLNLDAPGAPDP-----GALIEEVSKLSVDEQARAVQRNVNLQVVSCFAALERWHRNPEGLAAAERRIRTLEASAADRYEAGLPGAGAASRQSHVEAAEDAAARAMQDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQV-KDEEVFIDYRLNPDLADKLPTWYVPADPQAARRRW 1099
            + WRR+   I G  P   + +Q  AD G+A +L+     C+ +   L LD   A           +E V     ++Q + VQ  V  QV SCF A+ +  ++      +++    +  S  +R              + VE  +   +   Q  FGF + V+ S+   AG G+ + G+AP G+++ L+PG+V+LPE  K   + +++  S+  F   AR+D  +ID +  +  PR+  A+AH  NHPP+G     +  +++ P           EEP      + L   +PN +  EP+ L     +  +V     IAT  +  D+E+F++YR NPD    LP WY P D  + R  W
Sbjct:    3 SVWRRLQLRIAGTTPA--RRFQEEADVGVAAVLS-----CFRS---LKLDPQNAAKEHEELFDQAVEIVGNKKFEQQKQYVQDQVAKQVQSCFEAVLKMPKD------SDKNSPKMSLSGFER-------------NTEVEQ-QLGISDNFQKLFGFTLNVEESSVHDAGEGVKLLGSAPIGSLVALYPGIVYLPEHYKKKHHLTKL--SNNPFAR-ARFDSVIIDAKNESSKPRNPLAVAHKINHPPSGTPPNVIGFAFEFP----------QEEPFTTTEFDEL---IPNSFVQEPSRLS-MFGKRAIVHGLGFIATADIANDDELFLNYRYNPDRP--LPEWYTPVDVDSDRAMW 311          
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Match: W2G4W0_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G4W0_PHYPR)

HSP 1 Score: 110 bits (274), Expect = 7.630e-24
Identity = 67/207 (32.37%), Postives = 105/207 (50.72%), Query Frame = 2
Query:  482 QDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDPDYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGGSAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLLGGKVDRSMLVDSATLIATRQVKDEE-VFIDYRLNPDLADKLPTWYVPADPQAARRRW 1099
            Q  FGF + V+ S+  GAG G+ + G+AP G+++ L+PG+V+LPE  K   + S +  +       AR+D  +ID +  +  PR+  A+AH  NHPP+G S   +  +++ P             PE     +     +PN +  EP+ L     +  +V     IAT  + DEE +F++YR NPD    +P WY P D  + R  W
Sbjct:   59 QKLFGFTLNVEESSVPGAGEGVKLRGSAPIGSLVALYPGIVYLPEHYKKKHHLSELTNNP---YARARFDSVIIDAKKESSNPRNPLAVAHKINHPPSGTSPNVLGFAFEFP-------------PEEPFTTKEYDELIPNNFVQEPSRLS-MFGKRAIVHGLAFIATADIADEEELFLNYRYNPDRP--MPEWYAPVDVDSDRAMW 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7582.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT86_ECTSI5.430e-4343.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBE7_9STRA1.090e-3735.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TPU3_9STRA1.810e-3238.50Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2MLJ1_9STRA4.260e-2927.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3W6Z4_GLOUD2.730e-2728.44Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XP15_9STRA1.170e-2631.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3F2S190_9STRA2.760e-2629.53Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8K1CCH4_PYTOL4.900e-2534.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225X425_9STRA6.000e-2428.21Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2G4W0_PHYPR7.630e-2432.37Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7582contigP-wetherbeei_contig7582:1310..2989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT86
Model size1443
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.29e-44
EggNOG OGs28PNT@1|root,2QWAW@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_003720.1
Cds size1128
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.6084807-UTR-P-wetherbeei_contig7582:1309..13401683186989.6084807-UTR-P-wetherbeei_contig7582:1309..1340Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7582 1310..1340 +
1683186989.6373215-UTR-P-wetherbeei_contig7582:2705..29891683186989.6373215-UTR-P-wetherbeei_contig7582:2705..2989Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7582 2706..2989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.6202207-CDS-P-wetherbeei_contig7582:1340..23001683186989.6202207-CDS-P-wetherbeei_contig7582:1340..2300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7582 1341..2300 +
1683186989.6291378-CDS-P-wetherbeei_contig7582:2537..27051683186989.6291378-CDS-P-wetherbeei_contig7582:2537..2705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7582 2538..2705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7582.2.1prot_P-wetherbeei_contig7582.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7582 1341..2705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7582.2.1

>prot_P-wetherbeei_contig7582.2.1 ID=prot_P-wetherbeei_contig7582.2.1|Name=mRNA_P-wetherbeei_contig7582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=376bp
MAARTAWRRVVSLITGKRPNSDKSYQRAADTGLAWLLTTHYRRCYEANCL
LNLDAPGAPDPGALIEEVSKLSVDEQARAVQRNVNLQVVSCFAALERWHR
NPEGLAAAERRIRTLEASAADRYEAGLPGAGAASRQSHVEAAEDAAARAM
QDEFGFCMRVKPSTADGAGLGLFVDGTAPSGAVLGLFPGLVHLPEKLKDP
DYYSRVVESDRDFMLLARYDWHVIDCRYAAKTPRSVWALAHMANHPPAGG
SAAAMYVSYDIPLATGRGGGGADEEPEADAFPEALRRWVPNRYAVEPTLL
GGKVDRSMLVDSATLIATRQVKDEEVFIDYRLNPDLADKLPTWYVPADPQ
AARRRWAEGADAEDDAAAASPSPSR*
back to top

mRNA from alignment at P-wetherbeei_contig7582:1310..2989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7582.2.1 ID=mRNA_P-wetherbeei_contig7582.2.1|Name=mRNA_P-wetherbeei_contig7582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1680bp|location=Sequence derived from alignment at P-wetherbeei_contig7582:1310..2989+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGAGCAGCAGAGACTCCTTTCTCTCGTATGGCGGCGAGGACAGCGT GGAGGCGTGTCGTGAGTTTGATCACAGGAAAGAGACCCAACAGTGACAAA TCCTATCAACGTGCGGCAGACACGGGGCTGGCATGGCTCTTGACGACGCA TTACAGGCGATGTTACGAAGCCAACTGCCTCCTGAACCTCGATGCGCCAG GAGCGCCAGATCCAGGCGCCCTCATCGAAGAAGTAAGCAAGTTGAGCGTC GACGAACAGGCGAGGGCCGTGCAACGTAACGTTAACTTGCAAGTAGTGTC TTGCTTCGCGGCGCTAGAGCGGTGGCACAGGAATCCAGAGGGACTCGCCG CCGCAGAGCGCAGAATACGGACGCTCGAGGCCTCGGCAGCAGACCGCTAT GAAGCGGGCCTGCCTGGCGCCGGCGCCGCTTCGCGGCAATCGCACGTGGA GGCCGCCGAAGACGCTGCCGCCCGCGCGATGCAGGATGAATTCGGCTTCT GCATGCGGGTGAAGCCGTCGACGGCTGACGGCGCCGGTCTCGGCCTCTTC GTAGACGGCACCGCGCCCAGCGGCGCCGTGTTGGGGCTCTTCCCGGGGCT GGTTCACCTGCCGGAAAAGCTCAAGGACCCGGATTACTACAGCCGCGTCG TCGAGAGCGACCGCGACTTTATGCTGCTCGCCCGCTACGACTGGCACGTC ATCGACTGCCGTTACGCCGCCAAGACACCGCGCAGCGTCTGGGCGCTGGC GCACATGGCCAATCACCCGCCTGCCGGCGGCAGCGCTGCCGCAATGTACG TTTCTTATGACATTCCGCTGGCGACTGGCCGCGGCGGCGGTGGCGCCGAT GAGGAGCCAGAGGCGGACGCGTTCCCCGAGGCGCTCCGGCGGTGGGTGCC GAACCGCTATGCGGTGGAGCCAACGCTGCTGGGGGGCAAGGTCGACCGGT CGATGCTCGTCGACAGCGCCACCCTCATTGCAACCCGACAGGTAAAGCTT ACGGCGGGATAAAAGGACGGGCAAAACGGCCTACAGTAGCCGTATGCTTG TCTACTTCGCCCTTTTCCTTATTTCTTTTGAGAGGGAGAACACGATAGCG TTACGCAATCATGAAGACATACCAAATTTTTGGAGAAGCCGTGTGTTTCA TCCATTTCCTGCCTGTGGCACAGTGTCCATTGCTTCCCTGGACCGGATTC CACACCCGTTACAAACCCAATCCGGCAGGTGAAGGACGAGGAGGTGTTTA TAGACTACCGCCTCAACCCGGATCTGGCCGACAAGCTGCCGACATGGTAT GTGCCCGCTGACCCCCAGGCCGCGCGCCGGCGCTGGGCCGAGGGCGCCGA CGCAGAGGATGACGCGGCGGCGGCGTCACCATCGCCGTCGCGGTGAAGGC AGCGCTCGCCCGCTTTGCGGTTGATTGGTGAGCGTGTGGGAGAAATTTTG AAGGAAAAATTACATGGAGCGATGGCTAAAGGACAAAGCGGACGGCTGGA GGCAGATAGTGGCAGATATGCCGATGGAATGATCCTGGAAATCCAGAGAA TGCCGTGCCGCAGAGGAAGGCCTCCAGGCGGCACCGCCACAAGCACAGCT GCCTGGCCGACGAAGAGCGGCGCGGCACATCAGAGACAACCACAAGAGAT CACAATCAATCAATTTTGCGCTTTGCTCTA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7582:1310..2989+

>mRNA_P-wetherbeei_contig7582.2.1 ID=mRNA_P-wetherbeei_contig7582.2.1|Name=mRNA_P-wetherbeei_contig7582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1128bp|location=Sequence derived from alignment at P-wetherbeei_contig7582:1310..2989+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGAGGACAGCGTGGAGGCGTGTCGTGAGTTTGATCACAGGAAA
GAGACCCAACAGTGACAAATCCTATCAACGTGCGGCAGACACGGGGCTGG
CATGGCTCTTGACGACGCATTACAGGCGATGTTACGAAGCCAACTGCCTC
CTGAACCTCGATGCGCCAGGAGCGCCAGATCCAGGCGCCCTCATCGAAGA
AGTAAGCAAGTTGAGCGTCGACGAACAGGCGAGGGCCGTGCAACGTAACG
TTAACTTGCAAGTAGTGTCTTGCTTCGCGGCGCTAGAGCGGTGGCACAGG
AATCCAGAGGGACTCGCCGCCGCAGAGCGCAGAATACGGACGCTCGAGGC
CTCGGCAGCAGACCGCTATGAAGCGGGCCTGCCTGGCGCCGGCGCCGCTT
CGCGGCAATCGCACGTGGAGGCCGCCGAAGACGCTGCCGCCCGCGCGATG
CAGGATGAATTCGGCTTCTGCATGCGGGTGAAGCCGTCGACGGCTGACGG
CGCCGGTCTCGGCCTCTTCGTAGACGGCACCGCGCCCAGCGGCGCCGTGT
TGGGGCTCTTCCCGGGGCTGGTTCACCTGCCGGAAAAGCTCAAGGACCCG
GATTACTACAGCCGCGTCGTCGAGAGCGACCGCGACTTTATGCTGCTCGC
CCGCTACGACTGGCACGTCATCGACTGCCGTTACGCCGCCAAGACACCGC
GCAGCGTCTGGGCGCTGGCGCACATGGCCAATCACCCGCCTGCCGGCGGC
AGCGCTGCCGCAATGTACGTTTCTTATGACATTCCGCTGGCGACTGGCCG
CGGCGGCGGTGGCGCCGATGAGGAGCCAGAGGCGGACGCGTTCCCCGAGG
CGCTCCGGCGGTGGGTGCCGAACCGCTATGCGGTGGAGCCAACGCTGCTG
GGGGGCAAGGTCGACCGGTCGATGCTCGTCGACAGCGCCACCCTCATTGC
AACCCGACAGGTGAAGGACGAGGAGGTGTTTATAGACTACCGCCTCAACC
CGGATCTGGCCGACAAGCTGCCGACATGGTATGTGCCCGCTGACCCCCAG
GCCGCGCGCCGGCGCTGGGCCGAGGGCGCCGACGCAGAGGATGACGCGGC
GGCGGCGTCACCATCGCCGTCGCGGTGA
back to top