mRNA_P-wetherbeei_contig7580.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7580.1.1
Unique NamemRNA_P-wetherbeei_contig7580.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7580.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7580contigP-wetherbeei_contig7580:344..2622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2107
Hectar predicted targeting categoryother localisation
Exons2
Cds size1203
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.5098965-UTR-P-wetherbeei_contig7580:343..11211683186989.5098965-UTR-P-wetherbeei_contig7580:343..1121Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7580 344..1121 +
1683186989.5201168-UTR-P-wetherbeei_contig7580:1293..14191683186989.5201168-UTR-P-wetherbeei_contig7580:1293..1419Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7580 1294..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.529698-CDS-P-wetherbeei_contig7580:1419..26221683186989.529698-CDS-P-wetherbeei_contig7580:1419..2622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7580 1420..2622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7580.1.1prot_P-wetherbeei_contig7580.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7580 1420..2622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7580.1.1

>prot_P-wetherbeei_contig7580.1.1 ID=prot_P-wetherbeei_contig7580.1.1|Name=mRNA_P-wetherbeei_contig7580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=401bp
MLQQQQQQQQSMISQQQQQMMQQQQHQQQMTQHHQLHQQQQRSPPPGAVQ
VQSQAQMRVSPSPPGAPAAVSPPPMAGTMAAPLEVDADIPFPLQPQRSPR
SGGPQQSSPHALLPASVGQPLPQVGVLPSASVAPAAASPPMSEAPAHLLQ
MQRPLGSALAPRQVPLGPGSTPAYIFTGPAMNVLRAQIKRFKELSAISSQ
QQAAARGGGGVATAIVGNGASFAPPGAGNDAGAALGLSAGLLQQQQQQQM
LLRQQQQQQQAYLQQQQAGYLQQADPLVRAAHHHPSQPPRPQQQLPHPME
QRQGLPDRAKTELPTPAVGPQLPTSQQQLQQQRWQQQQQQQQQQQAAAAE
DRKLDVAWRDATSAVAAAVAAPAAAEAPQAPKLPSAADMGLPEFVPALPW
R
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mRNA from alignment at P-wetherbeei_contig7580:344..2622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7580.1.1 ID=mRNA_P-wetherbeei_contig7580.1.1|Name=mRNA_P-wetherbeei_contig7580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2279bp|location=Sequence derived from alignment at P-wetherbeei_contig7580:344..2622+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAGAGAGCGTGTTCTCGCAAGAAGGGCAGGTCACGACGGCGCCCC
CGCATATGCCAGAAGGTTACCGTTTGTGATTTCCCACAAACAAGAGAGGG
CCAATACGCCACATGTAGACAACGAGACAGAGGGCTTTTTAGACGAAGAG
GAACTATCCAGCGCGCTTTCAACTGTTTTGTTATTCCCTAAGCACAAGAC
TCGCCAATTTTGGCTTGACGTCAGCCGGCTTTCCAAATATTCAACCGAGA
ATGGAATACTGCTGCTTTTGCTGCCGACCTCTCTTAAATAGGCTCCTTCC
GTAAGAGCGACGATGCCCGGTGAAGATCAGTAAACCGATGCTCAGATCGA
ATACAAAAATCGAAAGAAATGCCCCACAAATCTCCGCAACGATTGCCAAT
CTAAAGGCCACTTGTCTTCTTCTCACCTCTTCTTTCCATCCCGACATTCC
AATGCGCTGGTCGCAAGCTTGGAAAGCTTTTTTCCTCAGATCCTGAAGGA
GTCCCTTCACGTCCGTCAACACGGAAGAGAGGGCACGTTCCAAACGAACC
CAGGAAAGCCATGGGAGACGACGAGGTGGAGATGGAAGACCTCATGGACG
CGGATGCCGCGTCCGCGAACACAGGCGGTCCTCTGATTCCACACAACGGA
GCTCCAACCCTGCAGCGTCTCGACGCGACTCAATATCCAGCGATGGTCCA
ACAGTCATTTCCTCGTCAGGTTTCCCCCACGGCGGCGCAGCAGAGCCGTT
TGGCTTGGGCACAGGGACCACAGCAGATGCAGCAGATGCAGCCGCGCCAG
CAGCAGCAGCAGCAGCAGCAACAGCCGCAACAGCAGCAGTATATGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACATTCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACATTCAGCAGCAGCAGATTCA
GCAGCAGCAGATTCAGCAGCAACAGATTCAGCAGCAGCAATTGCGCCATC
AGCAGCAACACCAGCAGCAGCAGCGGATGTTGCAGCAGCAGCAACAACAG
CAGCAGAGCATGATAAGCCAGCAGCAGCAACAGATGATGCAGCAGCAGCA
GCACCAGCAGCAAATGACGCAACACCACCAGCTTCACCAGCAGCAGCAGC
GATCGCCGCCACCCGGCGCGGTCCAGGTCCAGTCCCAGGCGCAAATGCGT
GTGTCGCCGTCTCCACCGGGTGCCCCTGCGGCTGTTTCGCCGCCCCCAAT
GGCCGGTACCATGGCAGCGCCTCTGGAAGTCGACGCCGACATCCCATTTC
CGCTGCAGCCGCAGCGGTCGCCTCGGTCGGGGGGACCGCAGCAAAGCTCT
CCGCATGCGTTGCTGCCGGCGTCCGTGGGGCAGCCGCTGCCTCAGGTGGG
AGTCCTGCCATCGGCGTCAGTGGCGCCGGCGGCTGCATCTCCGCCGATGT
CCGAGGCACCTGCGCACTTGCTGCAGATGCAGCGGCCTCTGGGGTCCGCG
TTGGCACCAAGACAGGTGCCCCTCGGGCCCGGTTCGACTCCGGCGTACAT
TTTCACTGGCCCAGCGATGAATGTGCTTCGGGCTCAGATCAAGCGCTTCA
AGGAGCTTTCGGCCATCAGCAGCCAGCAGCAGGCGGCGGCACGTGGCGGC
GGCGGCGTTGCGACTGCCATCGTGGGAAACGGGGCCTCTTTTGCGCCACC
GGGGGCCGGTAACGATGCTGGCGCCGCGTTGGGGCTCTCAGCGGGCTTGC
TACAGCAGCAACAGCAGCAGCAGATGCTTCTGCGGCAGCAGCAGCAACAA
CAACAGGCGTACCTCCAACAGCAGCAGGCGGGCTACTTGCAGCAGGCGGA
TCCACTCGTTCGCGCGGCCCACCATCACCCATCTCAGCCGCCGCGACCGC
AACAGCAGTTGCCGCATCCAATGGAGCAGCGCCAGGGGCTCCCGGACCGA
GCGAAGACGGAGCTTCCAACGCCGGCGGTGGGGCCCCAGCTGCCGACGTC
GCAGCAGCAGTTGCAGCAGCAGCGCTGGCAACAGCAGCAGCAACAACAGC
AGCAGCAGCAGGCGGCAGCAGCCGAAGACCGGAAGCTTGACGTCGCCTGG
CGGGATGCCACTTCGGCTGTGGCGGCAGCCGTCGCGGCGCCCGCAGCCGC
GGAAGCGCCGCAGGCGCCGAAGCTCCCGTCGGCAGCAGACATGGGCCTGC
CGGAATTCGTCCCGGCACTACCGTGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7580:344..2622+

>mRNA_P-wetherbeei_contig7580.1.1 ID=mRNA_P-wetherbeei_contig7580.1.1|Name=mRNA_P-wetherbeei_contig7580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig7580:344..2622+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCAGCAGCAGCAACAACAGCAGCAGAGCATGATAAGCCAGCAGCA
GCAACAGATGATGCAGCAGCAGCAGCACCAGCAGCAAATGACGCAACACC
ACCAGCTTCACCAGCAGCAGCAGCGATCGCCGCCACCCGGCGCGGTCCAG
GTCCAGTCCCAGGCGCAAATGCGTGTGTCGCCGTCTCCACCGGGTGCCCC
TGCGGCTGTTTCGCCGCCCCCAATGGCCGGTACCATGGCAGCGCCTCTGG
AAGTCGACGCCGACATCCCATTTCCGCTGCAGCCGCAGCGGTCGCCTCGG
TCGGGGGGACCGCAGCAAAGCTCTCCGCATGCGTTGCTGCCGGCGTCCGT
GGGGCAGCCGCTGCCTCAGGTGGGAGTCCTGCCATCGGCGTCAGTGGCGC
CGGCGGCTGCATCTCCGCCGATGTCCGAGGCACCTGCGCACTTGCTGCAG
ATGCAGCGGCCTCTGGGGTCCGCGTTGGCACCAAGACAGGTGCCCCTCGG
GCCCGGTTCGACTCCGGCGTACATTTTCACTGGCCCAGCGATGAATGTGC
TTCGGGCTCAGATCAAGCGCTTCAAGGAGCTTTCGGCCATCAGCAGCCAG
CAGCAGGCGGCGGCACGTGGCGGCGGCGGCGTTGCGACTGCCATCGTGGG
AAACGGGGCCTCTTTTGCGCCACCGGGGGCCGGTAACGATGCTGGCGCCG
CGTTGGGGCTCTCAGCGGGCTTGCTACAGCAGCAACAGCAGCAGCAGATG
CTTCTGCGGCAGCAGCAGCAACAACAACAGGCGTACCTCCAACAGCAGCA
GGCGGGCTACTTGCAGCAGGCGGATCCACTCGTTCGCGCGGCCCACCATC
ACCCATCTCAGCCGCCGCGACCGCAACAGCAGTTGCCGCATCCAATGGAG
CAGCGCCAGGGGCTCCCGGACCGAGCGAAGACGGAGCTTCCAACGCCGGC
GGTGGGGCCCCAGCTGCCGACGTCGCAGCAGCAGTTGCAGCAGCAGCGCT
GGCAACAGCAGCAGCAACAACAGCAGCAGCAGCAGGCGGCAGCAGCCGAA
GACCGGAAGCTTGACGTCGCCTGGCGGGATGCCACTTCGGCTGTGGCGGC
AGCCGTCGCGGCGCCCGCAGCCGCGGAAGCGCCGCAGGCGCCGAAGCTCC
CGTCGGCAGCAGACATGGGCCTGCCGGAATTCGTCCCGGCACTACCGTGG
CGG
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