prot_P-wetherbeei_contig758.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig758.3.1
Unique Nameprot_P-wetherbeei_contig758.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length423
Homology
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 9.950e-40
Identity = 85/209 (40.67%), Postives = 123/209 (58.85%), Query Frame = 0
Query:    1 MVRRLPFSLTEEAFLAATAPLAISAGLGERGTTWDLLYYTPGKLSKKRGKVTAVAYLRIDRLDGLDVDAAIAKLRAGALS----TPEFSGGGMSDGAGG--------------TLPVTLELAPYGKAFKTRPRRDVRTGTVHRDHDFRSFCAHLEAPVERLPGAEAYLEQKEAAAKDGQDTKPFNPLIDYIRQERARRLAEKTARRPLG 191
            +VRRLP  + EE F+ A A  A  AG+GERG +WDL+Y+TPGK+SKKRG+VT  AYL IDR  G + D +++KLRA   +    TP       S   G               T   T+E AP+ K FK +P+RDVR GT+ +D  +++FCA L++P + LP A+   + +E+  K+  + KP N L+D++R+  ARR+ +      LG
Sbjct:   29 VVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKE--EPKPQNALLDFLRERGARRVRDSQRAAALG 235          
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.970e-23
Identity = 72/190 (37.89%), Postives = 99/190 (52.11%), Query Frame = 0
Query:    1 MVRRLPFSLTEEAFLAATAPLAISAGLGERGTTWDLLYYTPGKLSKKRGKVTAVAYLRIDRLDGLDVDAAI-AKLRAGALSTPEFSGGGMSDGAGGTLPVTLELAPYGKAFKTRPRRDVRTGTVHRDHDFRSFCAHLEAPVERLPGAEAYLEQKEAAAKDGQDTK---------PFNPLIDYIRQERARR 180
            +VRRL    T E F +    +A  A   ER   + +LYY+PGK+SKKRGK+T   YL ++R  G+   AA+ A           F     +D      P+ +ELAPY + F+T+PRRD   GT  RD D+R+FCA LE PV++LP A+  L+Q+ A                  P   L+ YIR+ RA R
Sbjct:   66 VVRRLSPYFTPEDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAGVTPAAAVDAVAXXXXXXXXXFDTHARAD-PDAARPL-VELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQRAAXXXXXXXXXXXXXXXXGAPVAALVQYIRERRAAR 253          
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Match: A0A2G8KC34_STIJA (Putative regulator of nonsense transcripts 3A-like n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KC34_STIJA)

HSP 1 Score: 74.7 bits (182), Expect = 7.800e-11
Identity = 58/182 (31.87%), Postives = 78/182 (42.86%), Query Frame = 0
Query:    1 MVRRLPFSLTEEAFLAATAPLAISAGLGERGTTWDLLYYTPGKLSKKRGKVTAVAYLRIDRLDGLDVDAAIAKLRAGALSTPEFSGGGMSDGAGGTLPVTLELAPYGKAFKTRPRR-DVRTGTVHRDHDFRSFCAHLEAPVERLPGAEAYLEQKEAAAKDGQDTKPFNPLIDYIRQERARRL 181
            ++R LP +LTEE FL    PL              L  Y   +      K + V   R D+ DG                          D  G   P  +ELAPY K  K   R+ D R GT+  D D++ F   L A +E LP AEAYLE+ EA  +    TK   PLID+++++R  R+
Sbjct:   31 VIRCLPPTLTEEEFLKLVEPLTGHDFFNFFNADSSLGQYACSRAYINFLKQSDVVNFR-DKWDGFP----------------------FKDTNGKEYPAVVELAPYQKIPKRSNRKPDPRCGTIEEDEDYQKFLEVLNAEIEPLPSAEAYLEELEAKQRAAATTKVTTPLIDFLKKKRVERI 189          
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Match: A0A7M5V9A7_9CNID (Smg4_UPF3 domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V9A7_9CNID)

HSP 1 Score: 65.9 bits (159), Expect = 6.050e-8
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 0
Query:   83 EFSGGGMSDGAGGTLPVTLELAPYGKAFKTRPRRDVRTGTVHRDHDFRSFCAHLEAPVERLPGAEAYLEQKEAA-AKDGQDTKPFNPLIDYIRQERARRLA 182
            +F G    D  G      +E AP     K R ++D +TGT+ +D +F  F   L+   E+LP AE Y+E+ EAA A D    K   PLIDY++++R  RLA
Sbjct:   91 KFDGHLFYDTTGREFSAVVEFAPCQLVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEKLPSAEIYIEEIEAAKAIDKNKVKFTTPLIDYLKEKRDVRLA 191          
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Match: A0A8B6BKY6_MYTGA (Regulator of nonsense transcripts 3 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BKY6_MYTGA)

HSP 1 Score: 63.2 bits (152), Expect = 6.330e-7
Identity = 54/182 (29.67%), Postives = 80/182 (43.96%), Query Frame = 0
Query:    1 MVRRLPFSLTEEAFLAATAPLAISAGLGERGTTWDLLYYTPGKLSKKRGKVTAVAYLRIDRLDGLDVDAAIAKLRAGALSTPEFSGGGMSDGAGGTLPVTLELAPYGKAFKTRPRR-DVRTGTVHRDHDFRSFCAHLE-APVERLPGAEAYLEQKEAAAKDGQDTKPFN---PLIDYIRQER 177
            ++RRLP SLT E  L   +PL                Y+    +S  +   T  AY+     +       +   R       +F G    DG G      +ELAPY K  + +P++ DV+ G++ +D D+  F  +L+    E     EAYLE+ E   KD +  K      PLIDYIR++R
Sbjct:  514 LIRRLPPSLTPETLLEQLSPLPSHE-----------FYFVRADMSLGQNAFTR-AYINFQSYED------VYNFR------DQFDGYVFVDGKGNEYSAIVELAPYQKVPRRKPKKVDVKMGSIEQDPDYVKFLEYLQNEEAEETQTIEAYLEELELKEKDMKAKKSMKVSTPLIDYIRKKR 671          
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Match: A0A6J8EY75_MYTCO (UPF3 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EY75_MYTCO)

HSP 1 Score: 62.8 bits (151), Expect = 6.480e-7
Identity = 54/182 (29.67%), Postives = 80/182 (43.96%), Query Frame = 0
Query:    1 MVRRLPFSLTEEAFLAATAPLAISAGLGERGTTWDLLYYTPGKLSKKRGKVTAVAYLRIDRLDGLDVDAAIAKLRAGALSTPEFSGGGMSDGAGGTLPVTLELAPYGKAFKTRPRR-DVRTGTVHRDHDFRSFCAHLE-APVERLPGAEAYLEQKEAAAKDGQDTKPFN---PLIDYIRQER 177
            ++RRLP SLT E  L   +PL                Y+    +S  +   T  AY+     +       +   R       +F G    DG G      +ELAPY K  + +P++ DV+ G++ +D D+  F  +L+    E     EAYLE+ E   KD +  K      PLIDYIR++R
Sbjct:   25 LIRRLPPSLTPETLLEQLSPLPSHE-----------FYFVRADMSLGQNAFTR-AYINFQSYED------VYNFR------DQFDGYVFVDGKGNEYSAIVELAPYQKVPRRKPKKVDVKMGSIEQDPDYVKFLEYLQNEEAEETQTIEAYLEELENKEKDMKAKKSMKVTTPLIDYIRKKR 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig758.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LCG9_ECTSI9.950e-4040.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7E8_9STRA4.970e-2337.89Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A2G8KC34_STIJA7.800e-1131.87Putative regulator of nonsense transcripts 3A-like... [more]
A0A7M5V9A7_9CNID6.050e-838.61Smg4_UPF3 domain-containing protein n=1 Tax=Clytia... [more]
A0A8B6BKY6_MYTGA6.330e-729.67Regulator of nonsense transcripts 3 n=2 Tax=Mytilu... [more]
A0A6J8EY75_MYTCO6.480e-729.67UPF3 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..108
e-value: 1.6E-5
score: 27.1
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 1..177
e-value: 9.2E-18
score: 64.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..334
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 372..392
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..423
NoneNo IPR availablePANTHERPTHR13112:SF0FI21285P1coord: 2..414
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 2..414

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig758contigP-wetherbeei_contig758:1992..4119 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig758.3.1mRNA_P-wetherbeei_contig758.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig758 1992..4344 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig758.3.1 ID=prot_P-wetherbeei_contig758.3.1|Name=mRNA_P-wetherbeei_contig758.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=423bp
MVRRLPFSLTEEAFLAATAPLAISAGLGERGTTWDLLYYTPGKLSKKRGK
VTAVAYLRIDRLDGLDVDAAIAKLRAGALSTPEFSGGGMSDGAGGTLPVT
LELAPYGKAFKTRPRRDVRTGTVHRDHDFRSFCAHLEAPVERLPGAEAYL
EQKEAAAKDGQDTKPFNPLIDYIRQERARRLAEKTARRPLGERSAAAGTT
GRVSGYGSSISSSSSERARAAADSSPVATRRADRESPSRSYASSKRISAS
PAAAAAVAAAARDREPAAASATSAPAVAAAAAVAAPATAAAAEAKASERP
PSRKTASTGANGMPSRGARPREPQKERSKPGRHEPKAPPPPPPPPTSAAV
ADAPSAPPRDSAGPNEASQERDKPSPGPKTGAKARAERDGKPSPGRGTAA
AAAAAARQDQPAAEDRGSARRPQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR005120UPF3_dom
IPR039722Upf3