mRNA_P-wetherbeei_contig757.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig757.4.1
Unique NamemRNA_P-wetherbeei_contig757.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig757.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig757contigP-wetherbeei_contig757:2905..4248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr54257
PFAMsCTP_transf_like,SPX
Model size743
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.25e-05
EggNOG OGs2CDCK@1|root,2S3E4@2759|Eukaryota
DescriptionCytidylyltransferase-like
Cds size603
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.1561346-CDS-P-wetherbeei_contig757:2904..31801683186989.1561346-CDS-P-wetherbeei_contig757:2904..3180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig757 2905..3180 -
1683186989.1704357-CDS-P-wetherbeei_contig757:3469..36341683186989.1704357-CDS-P-wetherbeei_contig757:3469..3634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig757 3470..3634 -
1683186989.179025-CDS-P-wetherbeei_contig757:3946..41081683186989.179025-CDS-P-wetherbeei_contig757:3946..4108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig757 3947..4108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.1872053-UTR-P-wetherbeei_contig757:4108..42481683186989.1872053-UTR-P-wetherbeei_contig757:4108..4248Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig757 4109..4248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig757.4.1prot_P-wetherbeei_contig757.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig757 2905..4108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig757.4.1

>prot_P-wetherbeei_contig757.4.1 ID=prot_P-wetherbeei_contig757.4.1|Name=mRNA_P-wetherbeei_contig757.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
MKFGKSLSRRLPPEALSESIDYKALKTLLTRRRGGGRSSSSTGNEFCRRL
QFEKAKVARHYAGRERWCFAAIQRLQTVVLRLACRNSVGGGGGAAGTIMK
AHSLHDDPEAFAAHAGALVDAGLLLREARELARFVEVNRDAFCKILKKRA
KWESERAASAAAATGNPAAAAAAAAAAATAAAAAVATTTTVAAVVARGPS
G
back to top

mRNA from alignment at P-wetherbeei_contig757:2905..4248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig757.4.1 ID=mRNA_P-wetherbeei_contig757.4.1|Name=mRNA_P-wetherbeei_contig757.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1344bp|location=Sequence derived from alignment at P-wetherbeei_contig757:2905..4248- (Phaeothamnion wetherbeei SAG_119_79)
GCTCAGCACGAGAGCAGGTAGCACGCACGTACGTTGGAGATGGTGGGATA
GTCGAAGACATTATTTTCAACGCAGGCGAGAAGAGTTAAAAAAAACAGGT
GCGGAAGCCTCGAATTTGTTCTCCCTCGATAGAACAAGAAATGAAATTTG
GCAAGTCGCTTTCGCGGAGGCTCCCTCCAGAGGCATTGTCGGAAAGCATC
GATTACAAGGCGCTCAAGACCCTCCTTACGCGAAGACGCGGCGGGGGTCG
GTCCTCGTCGAGCACAGGAAATGAATTTTGCCGTCGGCTTCAGTTCGAGA
AGGTAAGGCGAGCGTACATCCGTGCGAGGCATCGATGGTGCAGGGGTTGC
AAGTCTTTCGAAATAGGTCTCCTGAGCGCCGTTCTTTATCTTGATTTCTC
ATTCCTCTAGGCATCCCTCGCGAGCAACATTGTGAGGCCTTTTCTCTCTT
TGCTTGCGACATCAGACGGGCTTCGTAGCTAAGTTCAGTAGGCATTTGTT
GATTACAACGCATTCCCTGAAATTTTTTGAAGCAAAGTAGGTATAGGGAC
GATCGTCACAAACGATCGTCACAAGATGCCATTTCTGCTTTATGTACACA
TCTCTCTAAAAAAGGCCAAGGTGGCGAGGCACTACGCCGGTCGGGAGCGC
TGGTGCTTTGCAGCGATCCAGCGGCTGCAGACCGTCGTGCTCCGCCTCGC
CTGCCGCAACAGCGTTGGCGGCGGCGGCGGTGCAGCGGGGACAATAATGA
AGGCGCATTCACTGCACGATGATCCCGAGGTTCGTGAGACGGCCATGCAG
CCTGTTTGTATTCCTGCCTTTTTTTGAAAGGTGTTTGATCTTCATTCTTG
GCACTCCTGTTCCGTCTAAAACTGGGTTTCTTTAAAAGGACTGTCTACAA
CTGGTTTTCTTCGAAAAAGACCTTGTTTGCTCTGTAGAAGCAGAGCGTGC
ACCCCCCCTCCTCTTCTCATTTCACCATGCATCTTTTGGCGGTTTTCCCA
ATGGTTGACATGTCTCATATTCTCCTTTCCCTCTTCATGCCGCGTTGTTG
TGTTTTGGCCTCAAACAGGCCTTTGCTGCGCACGCCGGCGCTCTCGTCGA
CGCCGGCCTCTTGCTCCGCGAGGCGCGCGAGCTGGCGCGCTTCGTGGAAG
TCAACCGCGACGCTTTCTGCAAGATTCTGAAAAAGCGGGCCAAGTGGGAA
TCGGAACGGGCCGCCTCGGCTGCGGCGGCGACCGGAAATCCGGCCGCGGC
AGCAGCGGCAGCGGCGGCAGCGGCGACGGCGGCGGCGGCGGCGGTGGCGA
CCACCACGACGGTAGCTGCGGTGGTCGCGAGAGGGCCGTCAGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig757:2905..4248-

>mRNA_P-wetherbeei_contig757.4.1 ID=mRNA_P-wetherbeei_contig757.4.1|Name=mRNA_P-wetherbeei_contig757.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig757:2905..4248- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATTTGGCAAGTCGCTTTCGCGGAGGCTCCCTCCAGAGGCATTGTC
GGAAAGCATCGATTACAAGGCGCTCAAGACCCTCCTTACGCGAAGACGCG
GCGGGGGTCGGTCCTCGTCGAGCACAGGAAATGAATTTTGCCGTCGGCTT
CAGTTCGAGAAGGCCAAGGTGGCGAGGCACTACGCCGGTCGGGAGCGCTG
GTGCTTTGCAGCGATCCAGCGGCTGCAGACCGTCGTGCTCCGCCTCGCCT
GCCGCAACAGCGTTGGCGGCGGCGGCGGTGCAGCGGGGACAATAATGAAG
GCGCATTCACTGCACGATGATCCCGAGGCCTTTGCTGCGCACGCCGGCGC
TCTCGTCGACGCCGGCCTCTTGCTCCGCGAGGCGCGCGAGCTGGCGCGCT
TCGTGGAAGTCAACCGCGACGCTTTCTGCAAGATTCTGAAAAAGCGGGCC
AAGTGGGAATCGGAACGGGCCGCCTCGGCTGCGGCGGCGACCGGAAATCC
GGCCGCGGCAGCAGCGGCAGCGGCGGCAGCGGCGACGGCGGCGGCGGCGG
CGGTGGCGACCACCACGACGGTAGCTGCGGTGGTCGCGAGAGGGCCGTCA
GGG
back to top