mRNA_P-wetherbeei_contig7558.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7558.2.1
Unique NamemRNA_P-wetherbeei_contig7558.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.190e-25
Identity = 79/211 (37.44%), Postives = 102/211 (48.34%), Query Frame = 1 
Query:  277 PWPQ---CVLRQPGGLEPGMPA--CSICCGSCGLYAT------------LLRHSRGSGRSSPMVGAWGGGTLAGAXXXXXXXXXXXXXXXXXXXXXXXEAAE---------LAAARVALLNVVEAVPSKAWMEDAWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWLARWWNQAWQSPAVAMRLVTTQAVAFRIYAFDSALSYEG 831
            PW Q   C +R       G P   C +C GSC L+A+            L   + G+G S+P      GG+ A        XX                  E         ++  R A+L + EAVP KAW    W  VS   WRAFV  AT  R L+QA L+ME+ +   WLA+WWN+ W SPAVAMR+VT Q+VA+R YA D+A+ YEG
Sbjct: 2720 PWHQPVDCSIR-------GAPVDQCQVCQGSCMLFASRRLKAASAAAGGLGATAEGAGSSTPAAKRSKGGSGASRTEVSSKXXGKGGGNRGGAEEPVGREPEAQVKEGKVDVSGLRSAVLQLAEAVPEKAWKTGQWRRVSYPAWRAFVLVATGPRELMQALLMMEAGITKEWLAKWWNKGWASPAVAMRVVTLQSVAYRAYALDAAVLYEG 2923
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BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.530e-21
Identity = 75/210 (35.71%), Postives = 97/210 (46.19%), Query Frame = 1 
Query:  277 PWPQ---CVLRQPGGLEPGMPA--CSICCGSCGLYAT------------LLRHSRGSGRSSPMVGAWGGGTLAGAXXXXXXXXXXXXXXXXXXXXXXXEA--------AELAAARVALLNVVEAVPSKAWMEDAWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWLARWWNQAWQSPAVAMRLVTTQAVAFRIYAFDSALSYEG 831
            PW Q   C +R       G P   C +C GSC L+A+            L   + G+G S+P      GG+ A                         E          +++  R A+L V EAVP KAW    W  VS   WRAFV  AT  R L+QA L+ME+ +   WLA+W      SPAVAMR+VT Q+VA+R YA D+A+ YEG
Sbjct: 2145 PWHQPVDCSIR-------GAPVDQCQVCQGSCMLFASRRLKAASAASGGLGATAEGAGLSTPAAKRSKGGSGASRTEVSSKKKGKGGNRGGAEEPVGLEPEAQVKEGKVDVSGLRSAVLQVAEAVPEKAWKTGQWRRVSYPAWRAFVLVATGPRELMQALLMMEAGITKEWLAKWXXXXXASPAVAMRVVTLQSVAYRAYALDAAVLYEG 2347
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BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Match: UPI000C1D882B (methyl-CpG-binding domain-containing protein 9-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D882B)

HSP 1 Score: 61.2 bits (147), Expect = 8.580e-7
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:  544 RVALLNVVEAVPSKAWMEDAWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWL-ARWWNQAWQSPAVAMRLVTTQAVAFRIYAFDSALSYEGRVPQG 846
            +++LL++  A+P  A            TWR FV+ A T   ++QA + +E  ++S +L + WW   W SP+ A ++ T  A+A RI+A DS +SYE  V  G
Sbjct: 1661 KISLLDMDAALPEGALRISRSNHNRRCTWRRFVKSANTIYEMIQAIITLEETIKSEYLRSDWWY--WSSPSTAAKVSTLSALALRIHALDSVISYEKPVSDG 1760
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BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Match: A0A485LI49_9STRA (Aste57867_21666 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI49_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.190e-6
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:  535 AAARVALLNVVEAVPSKAWMEDAWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWL-ARWWNQAWQSPAVAMRLVTTQAVAFRIYAFDSALSY 825
            A  + +LL +  A+P  A+  + W       W  FV HATT+RALL+A L++ES +E+ +L A W  Q+  +    +   T  + A R++A D ALS+
Sbjct: 2491 AVLQASLLAIEAALPRDAFRHNKWTRGLRAGWAEFVVHATTSRALLEATLVLESQIETEYLDATWKAQSSMTIKTLLPTATMASAAMRLHALDDALSF 2588
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BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Match: A0A2I4FAS2_JUGRE (methyl-CpG-binding domain-containing protein 9-like n=9 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4FAS2_JUGRE)

HSP 1 Score: 58.5 bits (140), Expect = 6.690e-6
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  577 PSKAWMEDAWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWLAR-WWNQAWQSPAVAMRLVTTQAVAFRIYAFDSALSYE 828
            PSK+ +E  WA      WRAF++ A T   ++QA +++E  +++G+L   WW   W S + A +  T  ++A RIY+ D+A+ YE
Sbjct: 2113 PSKSHVERRWA------WRAFIKSAGTIYEMVQATIILEDMIKTGYLRNEWWY--WSSLSAAAKTSTLSSLALRIYSLDAAVIYE 2189
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BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Match: UPI00053A32AC (methyl-CpG-binding domain-containing protein 9-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A32AC)

HSP 1 Score: 53.1 bits (126), Expect = 9.340e-5
Identity = 31/102 (30.39%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:  553 LLNVVEAVPSKAWMEDAWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWLAR-WWNQAWQSPAVAMRLVTTQAVAFRIYAFDSALSYEGRVPQGPPM 855
            LL++  A+P +A             WR FV+ A +   L+QA +++E  V++G+L   WW   W S + A ++ T  A++ RI++ D+A+ Y+  +    PM
Sbjct:   67 LLDMDVALPDEALRPSKSHPERRRAWRIFVKSAQSIYELVQATIVLEDMVKTGYLKNAWWY--WSSLSAAAKISTLSALSVRIFSLDAAIMYDKLITPSDPM 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7558.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G5K5_ECTSI3.190e-2537.44Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE1.530e-2135.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C1D882B8.580e-735.29methyl-CpG-binding domain-containing protein 9-lik... [more]
A0A485LI49_9STRA1.190e-635.71Aste57867_21666 protein n=1 Tax=Aphanomyces stella... [more]
A0A2I4FAS2_JUGRE6.690e-636.47methyl-CpG-binding domain-containing protein 9-lik... [more]
UPI00053A32AC9.340e-530.39methyl-CpG-binding domain-containing protein 9-lik... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7558contigP-wetherbeei_contig7558:1177..2042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3649.evm.model.supercontig_215.4
Preferred nameMBD9
PFAMsFYRC,FYRN,MBD,PHD,WHIM1,WSD
Model size867
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001763,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005911,GO:0006139,GO:0006259,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0008327,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009648,GO:0009653,GO:0009791,GO:0009889,GO:0009987,GO:0010016,GO:0010216,GO:0010223,GO:0010228,GO:0010346,GO:0010468,GO:0010556,GO:0016043,GO:0016407,GO:0016410,GO:0016567,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022414,GO:0030054,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033043,GO:0033044,GO:0034212,GO:0034641,GO:0036094,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048367,GO:0048573,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051171,GO:0051252,GO:0051276,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0061630,GO:0061659,GO:0061733,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090308,GO:0097159,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902275,GO:1903506,GO:1905393,GO:2000112,GO:2001141
Exons1
Evalue9.56e-08
EggNOG OGs28PKK@1|root,2QW8S@2759|Eukaryota,37WSH@33090|Viridiplantae,3GXIU@35493|Streptophyta,3HRPQ@3699|Brassicales
DescriptionWSTF, HB1, Itc1p, MBD9 motif 1
Cds size864
COG categoryB
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.2947183-CDS-P-wetherbeei_contig7558:1178..20421683186988.2947183-CDS-P-wetherbeei_contig7558:1178..2042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7558 1179..2042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7558.2.1prot_P-wetherbeei_contig7558.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7558 1179..2042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7558.2.1

>prot_P-wetherbeei_contig7558.2.1 ID=prot_P-wetherbeei_contig7558.2.1|Name=mRNA_P-wetherbeei_contig7558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
SSGDDGDGEKEEGGSGGKEAEKAAAGPAAAEAAAEGVAEGAAGDGGAPDD
SGPAWGLNSRSAITVAAGSGPAGTLAVAGAGGGSNANGTAEVPWPQCVLR
QPGGLEPGMPACSICCGSCGLYATLLRHSRGSGRSSPMVGAWGGGTLAGA
STAAAAAYYGGCGDDGGLGGGDQEAAELAAARVALLNVVEAVPSKAWMED
AWATVSLLTWRAFVRHATTARALLQAQLLMESNVESGWLARWWNQAWQSP
AVAMRLVTTQAVAFRIYAFDSALSYEGRVPQGPPMAPH
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mRNA from alignment at P-wetherbeei_contig7558:1177..2042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7558.2.1 ID=mRNA_P-wetherbeei_contig7558.2.1|Name=mRNA_P-wetherbeei_contig7558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=866bp|location=Sequence derived from alignment at P-wetherbeei_contig7558:1177..2042- (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCGGCGACGACGGCGACGGCGAGAAGGAGGAAGGCGGCTCCGGCGG
GAAGGAGGCGGAGAAAGCAGCTGCTGGCCCGGCGGCGGCGGAAGCGGCTG
CGGAAGGGGTGGCGGAAGGGGCGGCCGGCGACGGCGGTGCTCCGGACGAC
TCGGGGCCGGCGTGGGGTCTCAACTCGCGGTCCGCCATCACCGTGGCGGC
CGGCAGCGGCCCCGCCGGCACGTTGGCGGTCGCCGGCGCCGGCGGCGGAT
CCAATGCGAACGGTACGGCGGAGGTGCCATGGCCGCAGTGCGTCCTGCGG
CAGCCCGGCGGACTCGAGCCGGGAATGCCTGCCTGCAGCATCTGCTGCGG
TTCGTGCGGGCTGTACGCGACGCTGCTTCGCCACTCGCGCGGCAGCGGCC
GGTCTTCGCCCATGGTGGGCGCCTGGGGTGGTGGCACGCTTGCCGGCGCC
AGCACGGCGGCCGCCGCGGCGTACTACGGCGGCTGCGGTGACGATGGCGG
GCTCGGCGGTGGCGACCAGGAGGCGGCGGAGCTGGCGGCGGCGCGCGTGG
CGCTGCTCAACGTAGTGGAGGCGGTGCCGTCGAAAGCTTGGATGGAGGAC
GCGTGGGCGACCGTCAGCCTGCTGACGTGGCGCGCCTTCGTGCGGCACGC
GACGACAGCCCGTGCGCTGTTGCAGGCGCAGCTGCTGATGGAGTCCAACG
TCGAGTCCGGCTGGCTGGCCCGGTGGTGGAACCAGGCGTGGCAGTCGCCG
GCCGTGGCAATGCGGCTCGTGACGACGCAGGCCGTGGCCTTCCGCATCTA
CGCCTTCGACTCGGCCCTCTCGTATGAGGGCCGCGTACCGCAGGGCCCGC
CGATGGCGCCGCATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7558:1177..2042-

>mRNA_P-wetherbeei_contig7558.2.1 ID=mRNA_P-wetherbeei_contig7558.2.1|Name=mRNA_P-wetherbeei_contig7558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig7558:1177..2042- (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCGGCGACGACGGCGACGGCGAGAAGGAGGAAGGCGGCTCCGGCGG
GAAGGAGGCGGAGAAAGCAGCTGCTGGCCCGGCGGCGGCGGAAGCGGCTG
CGGAAGGGGTGGCGGAAGGGGCGGCCGGCGACGGCGGTGCTCCGGACGAC
TCGGGGCCGGCGTGGGGTCTCAACTCGCGGTCCGCCATCACCGTGGCGGC
CGGCAGCGGCCCCGCCGGCACGTTGGCGGTCGCCGGCGCCGGCGGCGGAT
CCAATGCGAACGGTACGGCGGAGGTGCCATGGCCGCAGTGCGTCCTGCGG
CAGCCCGGCGGACTCGAGCCGGGAATGCCTGCCTGCAGCATCTGCTGCGG
TTCGTGCGGGCTGTACGCGACGCTGCTTCGCCACTCGCGCGGCAGCGGCC
GGTCTTCGCCCATGGTGGGCGCCTGGGGTGGTGGCACGCTTGCCGGCGCC
AGCACGGCGGCCGCCGCGGCGTACTACGGCGGCTGCGGTGACGATGGCGG
GCTCGGCGGTGGCGACCAGGAGGCGGCGGAGCTGGCGGCGGCGCGCGTGG
CGCTGCTCAACGTAGTGGAGGCGGTGCCGTCGAAAGCTTGGATGGAGGAC
GCGTGGGCGACCGTCAGCCTGCTGACGTGGCGCGCCTTCGTGCGGCACGC
GACGACAGCCCGTGCGCTGTTGCAGGCGCAGCTGCTGATGGAGTCCAACG
TCGAGTCCGGCTGGCTGGCCCGGTGGTGGAACCAGGCGTGGCAGTCGCCG
GCCGTGGCAATGCGGCTCGTGACGACGCAGGCCGTGGCCTTCCGCATCTA
CGCCTTCGACTCGGCCCTCTCGTATGAGGGCCGCGTACCGCAGGGCCCGC
CGATGGCGCCGCAT
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