mRNA_P-wetherbeei_contig7536.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7536.1.1
Unique NamemRNA_P-wetherbeei_contig7536.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: A0A1Y5IE82_OSTTA (Histone acetyltransferase PCAF/SAGA, subunit SUPT3H/SPT3 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IE82_OSTTA)

HSP 1 Score: 78.6 bits (192), Expect = 4.130e-16
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   13 GEKQHKRHAGIYEYLPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLE 267
            GE   +R     + L  MM+GFGD++ P  ESVELM++++V+Y+ ++ H A+  + + GR   EDL+ V RNDR KF R+ ELLE
Sbjct:   59 GEAFVRRKGTFAKDLSYMMYGFGDAKEPDPESVELMEDMLVEYLTNVAHRAMEVAERRGRMQTEDLLYVIRNDRKKFARVDELLE 143          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: R0KLL3_ANAPL (Transcription initiation factor TFIID subunit 13 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0KLL3_ANAPL)

HSP 1 Score: 73.6 bits (179), Expect = 6.280e-15
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   10 GGEKQHKRHAGIYEYLPQ---MMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFKK 288
            GG     R AG+   LP    MM+GFGD + P TESV+++++LV+++I ++ H A++   Q GR   ED+V + R D  KF R+ +LL    E K+
Sbjct:    2 GGSGDRARRAGLTPRLPAVRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ-GRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKR 96          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: A4RXV1_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RXV1_OSTLU)

HSP 1 Score: 71.6 bits (174), Expect = 1.570e-14
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   67 MFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLE 267
            M+GFGD++ P  +S+ELM++++V Y+ ++ H A+  + + GR   EDL+ V RNDR KF R+ ELLE
Sbjct:    1 MYGFGDAKEPDPDSIELMEDMLVDYLTNVAHRAMEVAERRGRMQTEDLLYVIRNDRKKFARVDELLE 67          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: A0A2Z6P4D2_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4D2_TRISU)

HSP 1 Score: 72.8 bits (177), Expect = 2.450e-14
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   16 EKQHKRHAGIYEY-LPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFK 285
            E   KR  G+++  L  MM+GFGD   P+ ESV L+D++VV+YI +LVH A     Q G+   ED + + R D  K  R  ELL    E K
Sbjct:   21 EPSSKRRRGVFQRELQHMMYGFGDDPNPLPESVALLDDIVVEYITELVHKAQDIGSQRGKLSVEDFLYLIRKDAPKLNRCTELLSMNEELK 111          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: W9RLV5_9ROSA (Transcription initiation factor TFIID subunit 13 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RLV5_9ROSA)

HSP 1 Score: 72.4 bits (176), Expect = 3.800e-14
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   16 EKQHKRHAGIYEY-LPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFK 285
            E  +KR  G+++  L  MM+GFGD   P+ ESV LM+++VV+Y+ DLVH A     + G+   ED + + R D  K  R  ELL    E K
Sbjct:   20 ETSYKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTDLVHKAQDIGSKRGKLSVEDFLYLIRKDYPKLNRCTELLSMNEELK 110          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: D2UYS8_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UYS8_NAEGR)

HSP 1 Score: 70.5 bits (171), Expect = 6.430e-14
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   28 KRHAGIYEYLPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFKK 288
            ++   +  ++ QMM+GFGD   P+ E+V LM+ LV +Y+ ++V  AL  S ++GR + EDLV + R+D  K+ R+ ELL  + E KK
Sbjct:    3 RKKTELAPHIRQMMYGFGDVRNPLPETVTLMEELVREYVHEIVSEALKIS-KKGRLNPEDLVFLIRHDSKKYLRVDELLRKYQEIKK 88          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: M5X1F9_PRUPE (Uncharacterized protein n=10 Tax=Rosales TaxID=3744 RepID=M5X1F9_PRUPE)

HSP 1 Score: 72.0 bits (175), Expect = 6.900e-14
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   16 EKQHKRHAGIYEY-LPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFK 285
            E   KR  G+++  L  MM+GFGD + P+ ESV LM+++VV+YI DLVH A     + G+   ED + + R D  K  R  ELL    E K
Sbjct:   21 ETSFKRKRGVFQKELQHMMYGFGDDQNPLPESVALMEDIVVEYITDLVHKAQDIGSKRGKLSVEDFLYLIRKDFPKLNRCRELLSMNEELK 111          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: A0A6P4D4W6_ARADU (transcription initiation factor TFIID subunit 13 n=12 Tax=Fabaceae TaxID=3803 RepID=A0A6P4D4W6_ARADU)

HSP 1 Score: 71.2 bits (173), Expect = 9.780e-14
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   16 EKQHKRHAGIYEY-LPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFK 285
            E   KR  G+++  L  MM+GFGD   P+ ESV LM+++VV+Y+ +LVH A     Q G+   ED + + R D  K  R  ELL    E K
Sbjct:   21 ETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDLPKLNRCTELLSMNEELK 111          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: A0A1S3V1G4_VIGRR (transcription initiation factor TFIID subunit 13 n=19 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1S3V1G4_VIGRR)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-13
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   16 EKQHKRHAGIYEY-LPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFK 285
            E   KR  G+++  L  MM+GFGD   P+ ESV LM+++VV+Y+ +LVH A     Q G+   ED + + R D  K  R  ELL    E K
Sbjct:   21 ETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDLPKLNRCTELLSMNEELK 111          
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Match: A0A7J6HYY9_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6HYY9_CANSA)

HSP 1 Score: 70.9 bits (172), Expect = 1.590e-13
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   16 EKQHKRHAGIYEY-LPQMMFGFGDSETPVTESVELMDNLVVQYIDDLVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFK 285
            E   KR  G+++  L  MM+GFGD   P+ ESV LM+++VV+YI DLVH A     ++G+   ED + + R D  K  R  ELL    E K
Sbjct:   20 ETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITDLVHKAQDNGSKQGKLSVEDFLYLMRKDFRKLNRCKELLSMNEELK 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7536.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y5IE82_OSTTA4.130e-1644.71Histone acetyltransferase PCAF/SAGA, subunit SUPT3... [more]
R0KLL3_ANAPL6.280e-1539.58Transcription initiation factor TFIID subunit 13 (... [more]
A4RXV1_OSTLU1.570e-1446.27Uncharacterized protein (Fragment) n=1 Tax=Ostreoc... [more]
A0A2Z6P4D2_TRISU2.450e-1441.76Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
W9RLV5_9ROSA3.800e-1440.66Transcription initiation factor TFIID subunit 13 n... [more]
D2UYS8_NAEGR6.430e-1440.23Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
M5X1F9_PRUPE6.900e-1441.76Uncharacterized protein n=10 Tax=Rosales TaxID=374... [more]
A0A6P4D4W6_ARADU9.780e-1440.66transcription initiation factor TFIID subunit 13 n... [more]
A0A1S3V1G4_VIGRR1.000e-1340.66transcription initiation factor TFIID subunit 13 n... [more]
A0A7J6HYY9_CANSA1.590e-1341.76Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7536contigP-wetherbeei_contig7536:901..1188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog70448.Q018Q2
PFAMsTFIID-18kDa
Model size288
Max annot lvl3041|Chlorophyta
KEGG koko:K03127
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.1e-17
EggNOG OGsCOG5248@1|root,KOG3901@2759|Eukaryota,37UMD@33090|Viridiplantae,34NSR@3041|Chlorophyta
DescriptionTranscription initiation factor IID, 18kD subunit
Cds size288
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.8495667-CDS-P-wetherbeei_contig7536:900..11881683186986.8495667-CDS-P-wetherbeei_contig7536:900..1188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7536 901..1188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7536.1.1prot_P-wetherbeei_contig7536.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7536 901..1188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7536.1.1

>prot_P-wetherbeei_contig7536.1.1 ID=prot_P-wetherbeei_contig7536.1.1|Name=mRNA_P-wetherbeei_contig7536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MAYGGEKQHKRHAGIYEYLPQMMFGFGDSETPVTESVELMDNLVVQYIDD
LVHAALAYSPQEGRFDAEDLVLVFRNDRDKFRRIAELLEDFHEFKK
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mRNA from alignment at P-wetherbeei_contig7536:901..1188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7536.1.1 ID=mRNA_P-wetherbeei_contig7536.1.1|Name=mRNA_P-wetherbeei_contig7536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig7536:901..1188+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTACGGCGGGGAGAAACAGCACAAGAGGCACGCAGGAATCTATGA GTATCTTCCACAAATGATGTTTGGGTTCGGCGATTCGGAGACGCCAGTCA CGGAGTCCGTGGAGCTGATGGACAACCTCGTCGTGCAGTACATCGACGAC CTGGTCCACGCCGCGCTCGCCTACTCGCCGCAAGAGGGGCGCTTCGATGC GGAGGATCTGGTCTTGGTATTTCGCAACGACCGCGACAAGTTCCGGAGAA TCGCGGAGCTGCTCGAAGACTTCCACGAGTTCAAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7536:901..1188+

>mRNA_P-wetherbeei_contig7536.1.1 ID=mRNA_P-wetherbeei_contig7536.1.1|Name=mRNA_P-wetherbeei_contig7536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig7536:901..1188+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTACGGCGGGGAGAAACAGCACAAGAGGCACGCAGGAATCTATGA
GTATCTTCCACAAATGATGTTTGGGTTCGGCGATTCGGAGACGCCAGTCA
CGGAGTCCGTGGAGCTGATGGACAACCTCGTCGTGCAGTACATCGACGAC
CTGGTCCACGCCGCGCTCGCCTACTCGCCGCAAGAGGGGCGCTTCGATGC
GGAGGATCTGGTCTTGGTATTTCGCAACGACCGCGACAAGTTCCGGAGAA
TCGCGGAGCTGCTCGAAGACTTCCACGAGTTCAAGAAG
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