mRNA_P-wetherbeei_contig12872.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12872.1.1
Unique NamemRNA_P-wetherbeei_contig12872.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12872.1.1 vs. uniprot
Match: A0A024GAF3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GAF3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.810e-7
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 2 
Query:  224 EWREVLTKVRQGIEDRASCIPCTSAAYLCCLCTGGLSLLEYHRQRNEASEGLAKMLGHLN 403
            E+   +TKV   +ED   C+PCTS AY+CCLCTGG+S+    RQ  EA   +   L  +N
Sbjct:   43 EFDAAITKVNDALEDHWPCVPCTSFAYVCCLCTGGVSIYCAIRQVQEAKFRVNLQLSRIN 102
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BLAST of mRNA_P-wetherbeei_contig12872.1.1 vs. uniprot
Match: F0WFT4_9STRA (Uncharacterized protein AlNc14C85G5469 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WFT4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.660e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 2 
Query:  239 LTKVRQGIEDRASCIPCTSAAYLCCLCTGGLSLLEYHRQRNEASEGLAKMLGHLNANLEARGKRVRLEL 445
            +TK+   + D   CIPCTS AY+CCLCTGG+S+    RQ  EA   +   +  +N     +G+R+  +L
Sbjct:   47 ITKLNDALMDHWPCIPCTSFAYMCCLCTGGISVYCAIRQVQEAKYRVNLQMSRINELKVFKGRRIEWKL 115
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BLAST of mRNA_P-wetherbeei_contig12872.1.1 vs. uniprot
Match: A0A8K1FJI8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJI8_PYTOL)

HSP 1 Score: 52.8 bits (125), Expect = 2.650e-5
Identity = 29/105 (27.62%), Postives = 52/105 (49.52%), Query Frame = 2 
Query:  131 GERWTIRLPKQIDDDLPLPTRLAEISGLEAAEWREVLTKVRQGIEDRASCIPCTSAAYLCCLCTGGLSLLEYHRQRNEASEGLAKMLGHLNANLEARGKRVRLEL 445
            GE +   L    +D  P    ++    + A E+++ +TK+   ++D   C+PCTS AY CC+CT GLS      Q +EA   +   +  +N     + +++  +L
Sbjct:   16 GEVFVNGLAFSYEDVFPGDVDMSFAQYMTAEEFQKAITKINDALQDHWPCLPCTSFAYGCCVCTLGLSFYCATAQVHEAETRVNMQIRRINDQANFKSRQIEWQL 120
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BLAST of mRNA_P-wetherbeei_contig12872.1.1 vs. uniprot
Match: A0A2D4C036_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C036_PYTIN)

HSP 1 Score: 52.4 bits (124), Expect = 4.300e-5
Identity = 37/117 (31.62%), Postives = 50/117 (42.74%), Query Frame = 2 
Query:  131 GERWTIRLPKQIDDDLPLPTRLAEISGLEAAEWREVLTKVRQGIEDRASCIPCTSAAYLCCLCTGGLSLLEYHRQRNEASEGLAKMLGHLNANLEARGKRVRLELRRGSCNSADVTV 481
            GE +   L    DDD        E   L   E+   + K+   + D   C+PCTS AY CC+CT GLSL     Q  EA E     L  LNA      + +   L R   +  +++V
Sbjct:   30 GEIFVNGLASSYDDDWASHASXLE-RFLTRDEFERAVAKINDALLDHWPCLPCTSFAYGCCVCTLGLSLYCASAQVREAEERTQLQLRRLNAQQNFASREIEWRLVRAGESFIEISV 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12872.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A024GAF3_9STRA5.810e-745.00Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WFT4_9STRA2.660e-639.13Uncharacterized protein AlNc14C85G5469 n=1 Tax=Alb... [more]
A0A8K1FJI8_PYTOL2.650e-527.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C036_PYTIN4.300e-531.62Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12872contigP-wetherbeei_contig12872:889..1462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra80511
Model size574
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-07
EggNOG OGs2CYDN@1|root,2S3RC@2759|Eukaryota,3QFDI@4776|Peronosporales
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.4989061-UTR-P-wetherbeei_contig12872:888..9391683185964.4989061-UTR-P-wetherbeei_contig12872:888..939Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12872 889..939 -
1683185964.5245337-UTR-P-wetherbeei_contig12872:1353..14621683185964.5245337-UTR-P-wetherbeei_contig12872:1353..1462Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12872 1354..1462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.508863-CDS-P-wetherbeei_contig12872:939..13531683185964.508863-CDS-P-wetherbeei_contig12872:939..1353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12872 940..1353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12872.1.1prot_P-wetherbeei_contig12872.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12872 940..1353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12872.1.1

>prot_P-wetherbeei_contig12872.1.1 ID=prot_P-wetherbeei_contig12872.1.1|Name=mRNA_P-wetherbeei_contig12872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MEAPPRLGERWTIRLPKQIDDDLPLPTRLAEISGLEAAEWREVLTKVRQG
IEDRASCIPCTSAAYLCCLCTGGLSLLEYHRQRNEASEGLAKMLGHLNAN
LEARGKRVRLELRRGSCNSADVTVEFWPAGQGREDKL*
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mRNA from alignment at P-wetherbeei_contig12872:889..1462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12872.1.1 ID=mRNA_P-wetherbeei_contig12872.1.1|Name=mRNA_P-wetherbeei_contig12872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=574bp|location=Sequence derived from alignment at P-wetherbeei_contig12872:889..1462- (Phaeothamnion wetherbeei SAG_119_79)
CACCAGAAAGAGAGAGTGTGTCAGAGAAAGAAGCTTTCTATTGATCTCGG
AGGTGTGTCAACGATCACGTCCTGACAGTTTAGCGCGAGATAGGAAAGAG
ATCAACAGCATGGAGGCTCCCCCGCGCCTTGGCGAGAGGTGGACGATCCG
TCTCCCGAAGCAAATTGACGACGACTTACCCCTTCCGACGCGGTTGGCCG
AGATCAGCGGCTTGGAAGCGGCCGAGTGGCGAGAGGTACTCACAAAAGTC
CGGCAGGGAATCGAGGATAGAGCCTCGTGTATCCCATGCACCTCCGCGGC
GTATCTTTGCTGCTTATGTACGGGAGGCTTATCTCTGCTCGAGTATCACC
GACAGCGCAATGAGGCGAGTGAAGGACTTGCCAAAATGCTGGGCCATCTG
AATGCAAATCTGGAGGCGCGTGGGAAGCGAGTCAGGTTGGAGCTGCGTCG
AGGAAGCTGCAATAGTGCGGACGTCACAGTTGAATTTTGGCCGGCGGGAC
AGGGAAGAGAAGACAAATTATAGGGGAGGAAGCAACATTAACTAGAGAAA
AATTATTTGTGATATACAGGAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12872:889..1462-

>mRNA_P-wetherbeei_contig12872.1.1 ID=mRNA_P-wetherbeei_contig12872.1.1|Name=mRNA_P-wetherbeei_contig12872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig12872:889..1462- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCTCCCCCGCGCCTTGGCGAGAGGTGGACGATCCGTCTCCCGAA
GCAAATTGACGACGACTTACCCCTTCCGACGCGGTTGGCCGAGATCAGCG
GCTTGGAAGCGGCCGAGTGGCGAGAGGTACTCACAAAAGTCCGGCAGGGA
ATCGAGGATAGAGCCTCGTGTATCCCATGCACCTCCGCGGCGTATCTTTG
CTGCTTATGTACGGGAGGCTTATCTCTGCTCGAGTATCACCGACAGCGCA
ATGAGGCGAGTGAAGGACTTGCCAAAATGCTGGGCCATCTGAATGCAAAT
CTGGAGGCGCGTGGGAAGCGAGTCAGGTTGGAGCTGCGTCGAGGAAGCTG
CAATAGTGCGGACGTCACAGTTGAATTTTGGCCGGCGGGACAGGGAAGAG
AAGACAAATTATAG
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