mRNA_P-wetherbeei_contig7519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7519.1.1
Unique NamemRNA_P-wetherbeei_contig7519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7519.1.1 vs. uniprot
Match: A0A7S3R329_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R329_DUNTE)

HSP 1 Score: 53.1 bits (126), Expect = 6.480e-5
Identity = 35/87 (40.23%), Postives = 46/87 (52.87%), Query Frame = 3 
Query:   27 DSVRVDVGDTSFAALEMPLAVRPGPAGVAACLRLVGGIGELSTAVRSETGGLQLSFRPDDPLCHPISADRNSSRGNLYIMEVLLSVS 287
            D +R ++G + F A+E P  VR         L ++GG    + A   E G L+LSFRP+DPL HPI  D+  SR       VLL VS
Sbjct:   17 DGIRANIGQSMFTAVEFPGYVR----NTQKALSMIGGTP--AVAALGENGFLRLSFRPEDPLAHPIFGDKQHSRA------VLLRVS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3R329_DUNTE6.480e-540.23Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7519contigP-wetherbeei_contig7519:197..875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size679
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.840657-CDS-P-wetherbeei_contig7519:196..5861683186985.840657-CDS-P-wetherbeei_contig7519:196..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7519 197..586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.8504167-UTR-P-wetherbeei_contig7519:586..8751683186985.8504167-UTR-P-wetherbeei_contig7519:586..875Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7519 587..875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7519.1.1prot_P-wetherbeei_contig7519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7519 197..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7519.1.1

>prot_P-wetherbeei_contig7519.1.1 ID=prot_P-wetherbeei_contig7519.1.1|Name=mRNA_P-wetherbeei_contig7519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MPPSSVLLPFFERPCALLVKKSLDLPFPLLSASFLSSSIPLSGERLPKFV
SQGAASLGSSLDHLPQRQPHDSEAVDFQANFLLFLIIDSMSPFTNSHNRI
PGPSPPPPEASRGRCMQRRPQLHRRRKRQT
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mRNA from alignment at P-wetherbeei_contig7519:197..875-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7519.1.1 ID=mRNA_P-wetherbeei_contig7519.1.1|Name=mRNA_P-wetherbeei_contig7519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=679bp|location=Sequence derived from alignment at P-wetherbeei_contig7519:197..875- (Phaeothamnion wetherbeei SAG_119_79)
TCAGCAGCGGCTCGCCACAGCGGCGAGACTCAGTCCGCGTCGACGTTGGC
GATACGAGCTTCGCGGCACTTGAAATGCCGCTTGCGGTGCGTCCTGGGCC
CGCCGGCGTCGCCGCCTGCCTTCGACTCGTGGGCGGGATAGGAGAGCTGT
CCACCGCGGTGCGCAGCGAGACCGGGGGACTTCAGCTCTCCTTCCGGCCC
GACGATCCCTTGTGCCATCCCATCTCGGCGGACCGCAACAGCTCCCGCGG
CAACCTGTATATTATGGAGGTGTTGCTCTCTGTATCAGGATGCCCCCTAG
CAGTGTGCTGCTCCCATTTTTCGAGCGACCGTGCGCACTTCTCGTAAAGA
AGTCTCTCGACCTCCCTTTCCCTCTATTGAGTGCAAGCTTTCTATCTTCC
TCTATTCCTTTATCAGGCGAGAGGCTTCCAAAATTCGTATCTCAAGGCGC
TGCTAGTCTTGGAAGCTCTTTGGACCATTTACCTCAAAGGCAGCCTCACG
ATTCCGAAGCCGTTGATTTTCAGGCGAATTTTCTCCTTTTTCTTATCATT
GATTCAATGTCTCCCTTTACAAATTCACACAATCGTATCCCAGGTCCGTC
GCCGCCGCCTCCGGAAGCCAGCCGGGGCCGCTGCATGCAGCGGCGGCCAC
AGCTGCACCGGCGGCGGAAGCGACAAACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7519:197..875-

>mRNA_P-wetherbeei_contig7519.1.1 ID=mRNA_P-wetherbeei_contig7519.1.1|Name=mRNA_P-wetherbeei_contig7519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig7519:197..875- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCCTAGCAGTGTGCTGCTCCCATTTTTCGAGCGACCGTGCGCACT
TCTCGTAAAGAAGTCTCTCGACCTCCCTTTCCCTCTATTGAGTGCAAGCT
TTCTATCTTCCTCTATTCCTTTATCAGGCGAGAGGCTTCCAAAATTCGTA
TCTCAAGGCGCTGCTAGTCTTGGAAGCTCTTTGGACCATTTACCTCAAAG
GCAGCCTCACGATTCCGAAGCCGTTGATTTTCAGGCGAATTTTCTCCTTT
TTCTTATCATTGATTCAATGTCTCCCTTTACAAATTCACACAATCGTATC
CCAGGTCCGTCGCCGCCGCCTCCGGAAGCCAGCCGGGGCCGCTGCATGCA
GCGGCGGCCACAGCTGCACCGGCGGCGGAAGCGACAAACA
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