mRNA_P-wetherbeei_contig12871.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12871.2.1
Unique NamemRNA_P-wetherbeei_contig12871.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12871.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12871contigP-wetherbeei_contig12871:449..1858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1410
Hectar predicted targeting categoryother localisation
Exons1
Cds size1197
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.4518342-UTR-P-wetherbeei_contig12871:448..5611683185964.4518342-UTR-P-wetherbeei_contig12871:448..561Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12871 449..561 -
1683185964.4718015-UTR-P-wetherbeei_contig12871:1758..18581683185964.4718015-UTR-P-wetherbeei_contig12871:1758..1858Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12871 1759..1858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.4624171-CDS-P-wetherbeei_contig12871:561..17581683185964.4624171-CDS-P-wetherbeei_contig12871:561..1758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12871 562..1758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12871.2.1prot_P-wetherbeei_contig12871.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12871 562..1758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12871.2.1

>prot_P-wetherbeei_contig12871.2.1 ID=prot_P-wetherbeei_contig12871.2.1|Name=mRNA_P-wetherbeei_contig12871.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=399bp
MRGSWPTRHTTDTQRGLGMAASMGSIGGSDDAGTSRVAAAEHQRRAASLE
AEVRWLKAAVSRMDGVDAAATATFASLEAILDTVGCSRFYHVIDGDDDAV
AGKNGAVGGRSGAISGRSGVGGGRSDVVLGRSGDGAWLRASRGPLRDSSV
SDDDTGAGGARSATSLHEAAGDLPAMTAPAELSRRGGRLLRKAADVVAVL
RLRDGDLERIYAKKVAAGKPPPAPAAAAKIAAASQRYEWRTEEGQPRYGG
DGSCGGRVLEKPWASQEHPSAQRARADRAASSHRVRRKSPHRPAVDSAHG
QRWYIADAHADGGGGGSGGSDGGGSGNDDSDGDEYGETRPLPRKPPVVAA
GRGGLDQLRGEIERLRRRNDGIRRQLRLGGGNRGDGVVLSAFGGGPAR*
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mRNA from alignment at P-wetherbeei_contig12871:449..1858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12871.2.1 ID=mRNA_P-wetherbeei_contig12871.2.1|Name=mRNA_P-wetherbeei_contig12871.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1410bp|location=Sequence derived from alignment at P-wetherbeei_contig12871:449..1858- (Phaeothamnion wetherbeei SAG_119_79)
CTCTGGCAGCACGGGCGTCGCCGCCGCCGCCGCCGCCACCGCCGTTGCCG
CCACCACCGCCGCCGCCGCTGACGGCGATGATGGCGAGGGTTTCGCCGCC
ATGCGGGGATCATGGCCAACACGCCATACCACTGATACCCAAAGGGGTTT
GGGCATGGCGGCTTCAATGGGGAGTATCGGTGGCAGTGACGACGCCGGCA
CAAGCCGTGTGGCGGCGGCGGAGCACCAGCGGCGAGCGGCCTCCCTCGAA
GCGGAAGTGCGATGGCTGAAGGCGGCCGTCAGTCGGATGGACGGCGTGGA
CGCGGCAGCGACAGCGACGTTCGCCTCCCTGGAGGCGATTCTGGACACAG
TCGGATGTAGCCGGTTCTATCACGTCATTGACGGCGACGACGATGCCGTT
GCCGGCAAGAACGGCGCCGTCGGCGGCAGGAGTGGCGCCATCAGCGGCAG
GAGCGGCGTCGGCGGCGGCAGAAGCGACGTCGTCCTCGGCAGGAGCGGCG
ACGGCGCTTGGCTGAGGGCATCAAGAGGGCCGTTGCGGGATTCATCCGTG
AGCGATGATGACACGGGCGCCGGCGGCGCACGGTCGGCGACCTCGCTCCA
CGAAGCAGCTGGCGATCTGCCTGCCATGACGGCCCCGGCAGAGTTGAGCC
GCCGCGGCGGTCGCCTCTTGCGGAAGGCGGCGGACGTCGTGGCAGTGCTG
CGTCTTCGCGACGGTGACTTGGAACGGATATATGCCAAGAAGGTAGCAGC
GGGTAAGCCGCCGCCGGCGCCGGCGGCGGCAGCAAAGATCGCGGCAGCAT
CGCAAAGGTACGAATGGCGGACGGAGGAAGGACAGCCGCGGTACGGCGGC
GACGGCAGTTGCGGGGGCCGCGTTCTTGAGAAGCCGTGGGCGTCCCAGGA
ACACCCTTCGGCGCAGAGGGCGAGAGCTGACCGCGCAGCAAGTTCTCACA
GGGTGCGGCGAAAGTCGCCGCACCGCCCTGCTGTGGATTCTGCACATGGC
CAGCGCTGGTACATCGCCGACGCTCATGCCGATGGCGGCGGCGGCGGCAG
CGGTGGCAGCGACGGTGGTGGTAGCGGTAACGACGACAGCGATGGAGACG
AATACGGGGAAACCAGACCGCTGCCGCGGAAGCCGCCTGTCGTGGCGGCA
GGCCGCGGTGGGCTGGACCAGCTGCGCGGCGAGATTGAACGGCTGCGTCG
ACGAAATGACGGCATCCGACGCCAGCTGCGACTCGGCGGCGGCAACAGGG
GTGATGGGGTAGTACTCTCCGCCTTCGGAGGCGGCCCAGCCCGCTAGTCT
AGGCAGGAATAGCAAGTAGACAAGAGCTGCCTGGACTTGAAATTTGTCCT
CCGATCTTTCATGCCACACACTTGGCTTGATCAAAAACATTACGAAGATG
TGGTCTGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12871:449..1858-

>mRNA_P-wetherbeei_contig12871.2.1 ID=mRNA_P-wetherbeei_contig12871.2.1|Name=mRNA_P-wetherbeei_contig12871.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1197bp|location=Sequence derived from alignment at P-wetherbeei_contig12871:449..1858- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGGATCATGGCCAACACGCCATACCACTGATACCCAAAGGGGTTT
GGGCATGGCGGCTTCAATGGGGAGTATCGGTGGCAGTGACGACGCCGGCA
CAAGCCGTGTGGCGGCGGCGGAGCACCAGCGGCGAGCGGCCTCCCTCGAA
GCGGAAGTGCGATGGCTGAAGGCGGCCGTCAGTCGGATGGACGGCGTGGA
CGCGGCAGCGACAGCGACGTTCGCCTCCCTGGAGGCGATTCTGGACACAG
TCGGATGTAGCCGGTTCTATCACGTCATTGACGGCGACGACGATGCCGTT
GCCGGCAAGAACGGCGCCGTCGGCGGCAGGAGTGGCGCCATCAGCGGCAG
GAGCGGCGTCGGCGGCGGCAGAAGCGACGTCGTCCTCGGCAGGAGCGGCG
ACGGCGCTTGGCTGAGGGCATCAAGAGGGCCGTTGCGGGATTCATCCGTG
AGCGATGATGACACGGGCGCCGGCGGCGCACGGTCGGCGACCTCGCTCCA
CGAAGCAGCTGGCGATCTGCCTGCCATGACGGCCCCGGCAGAGTTGAGCC
GCCGCGGCGGTCGCCTCTTGCGGAAGGCGGCGGACGTCGTGGCAGTGCTG
CGTCTTCGCGACGGTGACTTGGAACGGATATATGCCAAGAAGGTAGCAGC
GGGTAAGCCGCCGCCGGCGCCGGCGGCGGCAGCAAAGATCGCGGCAGCAT
CGCAAAGGTACGAATGGCGGACGGAGGAAGGACAGCCGCGGTACGGCGGC
GACGGCAGTTGCGGGGGCCGCGTTCTTGAGAAGCCGTGGGCGTCCCAGGA
ACACCCTTCGGCGCAGAGGGCGAGAGCTGACCGCGCAGCAAGTTCTCACA
GGGTGCGGCGAAAGTCGCCGCACCGCCCTGCTGTGGATTCTGCACATGGC
CAGCGCTGGTACATCGCCGACGCTCATGCCGATGGCGGCGGCGGCGGCAG
CGGTGGCAGCGACGGTGGTGGTAGCGGTAACGACGACAGCGATGGAGACG
AATACGGGGAAACCAGACCGCTGCCGCGGAAGCCGCCTGTCGTGGCGGCA
GGCCGCGGTGGGCTGGACCAGCTGCGCGGCGAGATTGAACGGCTGCGTCG
ACGAAATGACGGCATCCGACGCCAGCTGCGACTCGGCGGCGGCAACAGGG
GTGATGGGGTAGTACTCTCCGCCTTCGGAGGCGGCCCAGCCCGCTAG
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