mRNA_P-wetherbeei_contig1287.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1287.5.1
Unique NamemRNA_P-wetherbeei_contig1287.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A7S4DAW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAW2_HETAK)

HSP 1 Score: 172 bits (437), Expect = 1.330e-53
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPN HTHYFSCVLLYLFAEA +E V+EQ+TR+LLERLIVHRPHPWGLLITFIELIKNPRY FW H FTHCAPE+ERVFESVARSCM P
Sbjct:   47 LRYPNTHTHYFSCVLLYLFAEAPAELVKEQVTRVLLERLIVHRPHPWGLLITFIELIKNPRYAFWRHGFTHCAPEVERVFESVARSCMGP 136
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 181 bits (460), Expect = 3.360e-51
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPNNHTHYFSCVLLYLFAEA +E V+EQITRILLERLIVHRPHPWGLLITFIELIKNPRY+FWSH FTHCAPELERVFESVARSCMAP
Sbjct: 2568 LRYPNNHTHYFSCVLLYLFAEAGAEDVREQITRILLERLIVHRPHPWGLLITFIELIKNPRYDFWSHRFTHCAPELERVFESVARSCMAP 2657
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 6.260e-51
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPN HTHY+SCVLLYLFAEA SE VQEQITRILLERLIVHRPHPWGLLITFIELIKNPRY+FWSHSFTHCAPELERVFESVARSCM P
Sbjct: 2764 LRYPNQHTHYYSCVLLYLFAEAQSEMVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYSFWSHSFTHCAPELERVFESVARSCMTP 2853
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A6S8SJ33_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SJ33_9STRA)

HSP 1 Score: 177 bits (450), Expect = 7.450e-50
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPNNHTHYFSCVLLYLFAEA SE +QEQ+TR+LLERLIVHRPHPWGLLITFIELIKNPRY+FWSH FTHCA E+ERVFESVARSCM P
Sbjct: 1593 LRYPNNHTHYFSCVLLYLFAEATSEYIQEQVTRVLLERLIVHRPHPWGLLITFIELIKNPRYSFWSHGFTHCATEIERVFESVARSCMGP 1682
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A812Z2L9_SYMMI (Cnot1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z2L9_SYMMI)

HSP 1 Score: 163 bits (413), Expect = 8.200e-50
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPNNHTH+FSCVLL LFA+A +E +QEQITR+LLERLIVHRPHPWGLLITFIELIKNPRY FW  SFT CAPE+ERVFESVARSC+ P
Sbjct:   50 LRYPNNHTHFFSCVLLSLFADADTEFIQEQITRVLLERLIVHRPHPWGLLITFIELIKNPRYVFWRRSFTRCAPEIERVFESVARSCIGP 139
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: V5GXZ6_ANOGL (CCR4-NOT transcription complex subunit (Fragment) n=3 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GXZ6_ANOGL)

HSP 1 Score: 162 bits (411), Expect = 1.410e-49
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCM 264
            LRYPN+HTHYFSC LLYLFAEA +E +QEQITR+LLERLIV+RPHPWGLLITFIELIKNP Y FW H F HCAPE+E++FESVARSCM
Sbjct:   67 LRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTYRFWQHEFVHCAPEIEKLFESVARSCM 154
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A7S0IL62_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IL62_MICPS)

HSP 1 Score: 172 bits (437), Expect = 1.560e-49
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPN HTHYFSCVLLYLFAEA SE VQEQITR+LLERLIV+RPHPWGLLITFIELIKNPRYNFW HSFT CAP++ER+FESVARSC+AP
Sbjct:  438 LRYPNCHTHYFSCVLLYLFAEAGSEVVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWGHSFTRCAPDIERLFESVARSCIAP 527
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: UPI000C775324 (CCR4-NOT transcription complex subunit 1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C775324)

HSP 1 Score: 160 bits (406), Expect = 3.980e-49
Identity = 70/88 (79.55%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCM 264
            LRYPN+HTHYFSC+LLYLF EA +E++QEQITR+LLERLIV+RPHPWGLLITFIELIKNP + FWSH F HCAPE++++FESVARSCM
Sbjct:   36 LRYPNSHTHYFSCLLLYLFGEANTESIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTFKFWSHEFVHCAPEIQKLFESVARSCM 123
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A7S0LSW3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSW3_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 4.620e-49
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP 270
            LRYPNN THYFSCVLLYLF+EAA E VQEQITR+L+ERLIVHRPHPWGLLITFIELIKNPRY+FWS +FT CAPE+ER+FESVARSCMAP
Sbjct:  413 LRYPNNQTHYFSCVLLYLFSEAADERVQEQITRVLVERLIVHRPHPWGLLITFIELIKNPRYSFWSKAFTRCAPEIERLFESVARSCMAP 502
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BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Match: A0A7S0F4P5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F4P5_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 4.770e-49
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    1 LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLLITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMA 267
            LRYPNNHTHYFSCVLLYLF+EA +E VQEQITR+L+ERLIVHRPHPWGLLITFIELIKNPRYNFWS  FT CAPE+ER+FESVARSCMA
Sbjct:  439 LRYPNNHTHYFSCVLLYLFSEAGTEKVQEQITRVLVERLIVHRPHPWGLLITFIELIKNPRYNFWSKGFTRCAPEIERLFESVARSCMA 527
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1287.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAW2_HETAK1.330e-5386.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZHM2_9STRA3.360e-5193.33CCR4-Not complex component, Not1-domain-containing... [more]
A0A6H5JXN6_9PHAE6.260e-5193.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S8SJ33_9STRA7.450e-5088.89Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A812Z2L9_SYMMI8.200e-5083.33Cnot1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
V5GXZ6_ANOGL1.410e-4981.82CCR4-NOT transcription complex subunit (Fragment) ... [more]
A0A7S0IL62_MICPS1.560e-4987.78Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
UPI000C7753243.980e-4979.55CCR4-NOT transcription complex subunit 1-like n=1 ... [more]
A0A7S0LSW3_9EUKA4.620e-4986.67Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0F4P5_9EUKA4.770e-4987.64Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1287contigP-wetherbeei_contig1287:6609..7222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3218.PP1S85_31V6.1
PFAMsCNOT1_CAF1_bind,CNOT1_HEAT,CNOT1_TTP_bind,DUF3819,Not1
Model size271
Max annot lvl35493|Streptophyta
KEGG koko:K12604
KEGG Pathwayko03018,map03018
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.01e-49
EggNOG OGsCOG5103@1|root,KOG1831@2759|Eukaryota,37KCN@33090|Viridiplantae,3GH64@35493|Streptophyta
DescriptionCcr4-not transcription complex
Cds size270
COG categoryK
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.413301-CDS-P-wetherbeei_contig1287:6608..67401683185964.413301-CDS-P-wetherbeei_contig1287:6608..6740Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1287 6609..6740 -
1683185964.4242005-CDS-P-wetherbeei_contig1287:7084..72221683185964.4242005-CDS-P-wetherbeei_contig1287:7084..7222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1287 7085..7222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1287.5.1prot_P-wetherbeei_contig1287.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1287 6609..7222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1287.5.1

>prot_P-wetherbeei_contig1287.5.1 ID=prot_P-wetherbeei_contig1287.5.1|Name=mRNA_P-wetherbeei_contig1287.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
LRYPNNHTHYFSCVLLYLFAEAASETVQEQITRILLERLIVHRPHPWGLL
ITFIELIKNPRYNFWSHSFTHCAPELERVFESVARSCMAP
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mRNA from alignment at P-wetherbeei_contig1287:6609..7222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1287.5.1 ID=mRNA_P-wetherbeei_contig1287.5.1|Name=mRNA_P-wetherbeei_contig1287.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=614bp|location=Sequence derived from alignment at P-wetherbeei_contig1287:6609..7222- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTACCCCAACAACCACACGCACTACTTCAGCTGCGTGCTGCTCTA
CCTCTTTGCGGAGGCGGCCAGCGAGACGGTGCAGGAGCAAATCACGCGCA
TCTTGCTCGAGCGACTCATTGTCCACCGTCCGCACCCGGTGAGTGCTGAG
CTCTGTCTATTTGTTTTCTGTTTGTGCGATGTTCGTTTCCTTTAAGCTCG
TGTGTGGTTGGCGGCAGCAATCGGTGGCAGTTTTGGGCGCTCGCGGTGCA
AAGAGACAGAGCTTGAGGAAACCTTTACAGGGCAGCTAATAATCAGAATT
GCTCGGTGTGGGGATCGCCGTTGAGAGGCGTGGAGGTCGGGTGGGTTGTT
GGCGGCGGCATTGCTTTCGCGTGCGCACTGAGCCGATGTCGTGTTACCCT
TCCTTGTTCTGATTACCGGCGGCTCACAATTCTCTTTCCTCTCGCGTCTA
CCCTCTTCTTTCTGCGATCGCCCTGTCGGCAGTGGGGGCTGCTGATCACG
TTCATCGAGCTGATCAAGAACCCGCGCTACAACTTCTGGAGCCACTCCTT
CACCCACTGTGCCCCCGAGCTCGAGCGTGTCTTCGAGTCCGTCGCCCGCA
GCTGCATGGCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1287:6609..7222-

>mRNA_P-wetherbeei_contig1287.5.1 ID=mRNA_P-wetherbeei_contig1287.5.1|Name=mRNA_P-wetherbeei_contig1287.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig1287:6609..7222- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTACCCCAACAACCACACGCACTACTTCAGCTGCGTGCTGCTCTA
CCTCTTTGCGGAGGCGGCCAGCGAGACGGTGCAGGAGCAAATCACGCGCA
TCTTGCTCGAGCGACTCATTGTCCACCGTCCGCACCCGTGGGGGCTGCTG
ATCACGTTCATCGAGCTGATCAAGAACCCGCGCTACAACTTCTGGAGCCA
CTCCTTCACCCACTGTGCCCCCGAGCTCGAGCGTGTCTTCGAGTCCGTCG
CCCGCAGCTGCATGGCGCCC
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