mRNA_P-wetherbeei_contig7492.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7492.1.1
Unique NamemRNA_P-wetherbeei_contig7492.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: D8LAZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ9_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.250e-37
Identity = 63/83 (75.90%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            +QETDYDQFLSQ+ K+TPA LQ+RA KK+VVEF +++AQAQEPLS+FLEY+TYEYMIEN+M+LLKGTLSGR+V ELI+QCHP+
Sbjct:   57 LQETDYDQFLSQENKVTPAALQERATKKLVVEFNFLKAQAQEPLSTFLEYITYEYMIENIMMLLKGTLSGRDVNELIEQCHPM 139
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A836CAY8_9STRA (V0 complex, c/d subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.490e-35
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            +QE+DYDQF+S  TK+TPA++Q++AI KMV EF +I+AQAQEPL +FLEY+ YEYMIENVMLLLKGTLSGRNV ELIDQCHPL
Sbjct:   55 LQESDYDQFMSAQTKVTPALVQEKAILKMVKEFNFIKAQAQEPLVTFLEYIQYEYMIENVMLLLKGTLSGRNVEELIDQCHPL 137
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A7S2CIC4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIC4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.160e-31
Identity = 55/83 (66.27%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            +QETDYDQFLS  T +TP+++Q +A +KMV+EF+Y+RA + EPLSSF++++  EYMIENVMLLLKGTLSGR+V EL++QCHPL
Sbjct:   55 LQETDYDQFLSDVTTVTPSIIQQKATEKMVIEFQYMRAHSVEPLSSFMDFIAIEYMIENVMLLLKGTLSGRDVNELMEQCHPL 137
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A482RYL1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYL1_9ARCH)

HSP 1 Score: 114 bits (284), Expect = 2.260e-30
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    1 VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            +QETDY   ++ D  ITP +L+ RA+ K+V EF Y+RAQA +PL+ FL+Y+TYEYMIENVMLL++GTLSGRN+ EL+ QCHPL
Sbjct:    3 LQETDYASCVANDANITPPLLEQRALAKLVTEFFYMRAQAVDPLAKFLDYITYEYMIENVMLLMRGTLSGRNINELLSQCHPL 85
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A7S3ZVT8_9STRA (V-type proton ATPase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVT8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.250e-30
Identity = 56/81 (69.14%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    7 ETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            ETDYDQFL+    + PAV+ ++A  KMV EF+Y+RAQA EPL++FL+Y+TYEYMI+NVMLLLKGTLSGR+V ELI+QCHPL
Sbjct:   50 ETDYDQFLADAPVVNPAVILEKATGKMVAEFKYLRAQAVEPLATFLDYITYEYMIDNVMLLLKGTLSGRDVGELIEQCHPL 130
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: F0XZC2_AURAN (V-type proton ATPase subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZC2_AURAN)

HSP 1 Score: 116 bits (290), Expect = 2.810e-29
Identity = 53/81 (65.43%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    7 ETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            ETDYD FL+ +  ++PAV+ + A KKMV EF+++RAQA EPL++FL+Y+T+EYMI+NVMLLLKGT+SGR+V ELI+QCHPL
Sbjct:   49 ETDYDAFLANEASVSPAVILECATKKMVAEFQFLRAQAVEPLATFLDYITFEYMIDNVMLLLKGTISGRDVGELIEQCHPL 129
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A7S3HJ59_9STRA (V-type proton ATPase subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ59_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.220e-29
Identity = 54/83 (65.06%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            +QETDY Q L+ +T ITP ++++RA+ K+V EF ++RA A  PLS+FL+Y+TYEYMIENVMLLL+GTLSGRNV EL+ QCHPL
Sbjct:   52 LQETDYGQMLANETLITPPIIENRALNKLVTEFFFLRANAVAPLSTFLDYITYEYMIENVMLLLRGTLSGRNVNELMAQCHPL 134
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: W7U0A2_9STRA (Vacuolar atpase subunit dva41 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0A2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.300e-27
Identity = 50/83 (60.24%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            +QETDYDQF+S +  ITPA  +++A++K+V E +++RA A EPL++FL+Y++YE+MI+NVMLLLKGTLSGR+  ELI QC+PL
Sbjct:   56 LQETDYDQFMSNEQHITPASFREKALQKLVQEMDFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCNPL 138
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A7S1YV70_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YV70_TRICV)

HSP 1 Score: 108 bits (269), Expect = 4.440e-27
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    7 ETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            E+DY + L  +T ITP  LQ  A++K+V EF+Y+R Q+ +PL  FL+++TYEYMIENVMLLLKGTLSGR++ ELI QCHPL
Sbjct:   51 ESDYAEALVDETSITPTSLQSTAVQKLVTEFQYLRCQSIQPLGKFLDFITYEYMIENVMLLLKGTLSGRDINELIAQCHPL 131
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BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Match: A0A6U3S2M4_9STRA (V-type proton ATPase subunit n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3S2M4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.260e-26
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    7 ETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEYVTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL 249
            E+DY   L     +TP+ LQ  A++K+V EF+Y+R+QA EP+ +FL+++TYEYMIENVMLLLKGTLSGR++ ELI+QCHPL
Sbjct:   58 ESDYSDVLQDTNTLTPSGLQSAAVEKLVTEFQYLRSQAVEPMGTFLDFITYEYMIENVMLLLKGTLSGRDINELIEQCHPL 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7492.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ9_ECTSI2.250e-3775.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAY8_9STRA5.490e-3575.90V0 complex, c/d subunit of ATPase n=1 Tax=Tribonem... [more]
A0A7S2CIC4_9STRA6.160e-3166.27Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A482RYL1_9ARCH2.260e-3062.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3ZVT8_9STRA5.250e-3069.14V-type proton ATPase subunit n=1 Tax=Pelagomonas c... [more]
F0XZC2_AURAN2.810e-2965.43V-type proton ATPase subunit n=1 Tax=Aureococcus a... [more]
A0A7S3HJ59_9STRA4.220e-2965.06V-type proton ATPase subunit n=1 Tax=Spumella elon... [more]
W7U0A2_9STRA1.300e-2760.24Vacuolar atpase subunit dva41 (Fragment) n=1 Tax=N... [more]
A0A7S1YV70_TRICV4.440e-2761.73Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U3S2M4_9STRA1.260e-2660.49V-type proton ATPase subunit n=2 Tax=Lithodesmiace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7492contigP-wetherbeei_contig7492:136..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAZ9
Preferred nameATP6V0D2
PFAMsvATP-synt_AC39
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K02146,ko:K18164
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04714,ko04721,ko04966,ko05110,ko05120,ko05152,ko05203,ko05323,map00190,map01100,map04142,map04145,map04714,map04721,map04966,map05110,map05120,map05152,map05203,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0001654,GO:0001655,GO:0001763,GO:0001822,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003406,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006885,GO:0006950,GO:0006986,GO:0006996,GO:0007034,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007424,GO:0007430,GO:0007507,GO:0008021,GO:0008057,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008544,GO:0008553,GO:0008593,GO:0009506,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009894,GO:0009913,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010506,GO:0010646,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016241,GO:0016324,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022008,GO:0022607,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030030,GO:0030031,GO:0030054,GO:0030133,GO:0030139,GO:0030154,GO:0030182,GO:0030424,GO:0030641,GO:0030659,GO:0030666,GO:0030670,GO:0030855,GO:0030968,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032009,GO:0032438,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033059,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033267,GO:0033554,GO:0033572,GO:0034220,GO:0034620,GO:0034976,GO:0035050,GO:0035239,GO:0035295,GO:0035315,GO:0035675,GO:0035966,GO:0035967,GO:0036295,GO:0036296,GO:0036442,GO:0036498,GO:0039022,GO:0042221,GO:0042490,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043473,GO:0043492,GO:0043679,GO:0044085,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044769,GO:0044782,GO:0044877,GO:0045177,GO:0045184,GO:0045202,GO:0045335,GO:0045851,GO:0046688,GO:0046916,GO:0046961,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048753,GO:0048754,GO:0048793,GO:0048856,GO:0048869,GO:0048878,GO:0048880,GO:0048882,GO:0048884,GO:0048886,GO:0048925,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055044,GO:0055065,GO:0055067,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060041,GO:0060271,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0060972,GO:0061138,GO:0061371,GO:0065007,GO:0065008,GO:0070382,GO:0070482,GO:0070887,GO:0070925,GO:0070986,GO:0071310,GO:0071375,GO:0071417,GO:0071453,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0072073,GO:0072176,GO:0072359,GO:0072512,GO:0090662,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:0099503,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0150034,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Exons2
Evalue3.69e-38
EggNOG OGsCOG1527@1|root,KOG2957@2759|Eukaryota
Ec32 ortholog descriptionATPase, V0 complex, c/d subunit
Ec32 orthologEc-27_005790.1
Descriptionproton-exporting ATPase activity, phosphorylative mechanism
Cds size249
COG categoryC
BiGG ReactioniMM904.YLR447C,iND750.YLR447C
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.5257478-CDS-P-wetherbeei_contig7492:135..2671683186984.5257478-CDS-P-wetherbeei_contig7492:135..267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7492 136..267 -
1683186984.5399895-CDS-P-wetherbeei_contig7492:463..5801683186984.5399895-CDS-P-wetherbeei_contig7492:463..580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7492 464..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7492.1.1prot_P-wetherbeei_contig7492.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7492 136..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7492.1.1

>prot_P-wetherbeei_contig7492.1.1 ID=prot_P-wetherbeei_contig7492.1.1|Name=mRNA_P-wetherbeei_contig7492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
VQETDYDQFLSQDTKITPAVLQDRAIKKMVVEFEYIRAQAQEPLSSFLEY
VTYEYMIENVMLLLKGTLSGRNVTELIDQCHPL
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mRNA from alignment at P-wetherbeei_contig7492:136..580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7492.1.1 ID=mRNA_P-wetherbeei_contig7492.1.1|Name=mRNA_P-wetherbeei_contig7492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=445bp|location=Sequence derived from alignment at P-wetherbeei_contig7492:136..580- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAGGAGACGGACTACGACCAGTTTCTGTCGCAGGACACAAAGATTAC
GCCGGCGGTGCTGCAGGACCGCGCTATCAAGAAGATGGTCGTCGAGTTCG
AGTACATCCGTGCACAGGTCCATTGGAGTTTGATTATATTGTCAGCCCTT
TTTTTTTTTTNNNNNNNNNNCCGCCGTCACTGGTTTGACCTCGGTTGGTG
TGGCTTTGTGGTTGCTCGAATCCACGTTCCTCTTTTTGTCTTGTGCGTGC
TGCCCTGCGTTGATGCAATTGTCCATCTGCCTGCGTATCCTGACAAATCT
GCCGGCATGTCAGGCCCAGGAGCCGCTGTCGTCGTTCCTAGAGTACGTGA
CGTACGAGTACATGATCGAGAACGTCATGCTGCTCCTCAAGGGCACGCTG
TCGGGCCGCAATGTCACCGAGCTCATCGACCAGTGCCACCCCCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7492:136..580-

>mRNA_P-wetherbeei_contig7492.1.1 ID=mRNA_P-wetherbeei_contig7492.1.1|Name=mRNA_P-wetherbeei_contig7492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig7492:136..580- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAGGAGACGGACTACGACCAGTTTCTGTCGCAGGACACAAAGATTAC
GCCGGCGGTGCTGCAGGACCGCGCTATCAAGAAGATGGTCGTCGAGTTCG
AGTACATCCGTGCACAGGCCCAGGAGCCGCTGTCGTCGTTCCTAGAGTAC
GTGACGTACGAGTACATGATCGAGAACGTCATGCTGCTCCTCAAGGGCAC
GCTGTCGGGCCGCAATGTCACCGAGCTCATCGACCAGTGCCACCCCCTA
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