mRNA_P-wetherbeei_contig7491.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A146H2N5_MYCCL (Integrase catalytic domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H2N5_MYCCL) HSP 1 Score: 70.1 bits (170), Expect = 4.170e-9 Identity = 73/261 (27.97%), Postives = 97/261 (37.16%), Query Frame = 3
Query: 66 TLQLWHQRLGHSG-DHVLARLMSDSNTRVP*TDSDLRQ-FGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPLPVRSRPKAIAMPLSSWT--------------IPQECAAFTSCAVQRRYSDASNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPGKRNRAGIFSAVYAVNERRGRTKLAIAHGASPLHAGGIWLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFGC 800
T+ LWH+RLGH G D+V D + T S E C+ GK HR A+ RA LELVH D+ GPLPVRSR WT + ++ F + V + +++ P D V + C GI NE I + H + A G +A D YL NR+PT + P + P +WN+G P L LR FGC
Sbjct: 441 TVSLWHRRLGHIGMDYVKMLKSRDLVLGMQITSSQPPDPICEPCLAGKQHRGPIPKHAEFRATQPLELVHVDLKGPLPVRSREG-----YQYWTTFIDDYRRVWVTFKLKKKSEFFKAMCVYKVFAEKYTG-----YPLKALREDKGGEFVSHEMRRFC---------QEHGIRREHTVRNEPHQNGVAEIGNRVMLEHVTAMLSEANLPPSFWG--YAADCFTYLHNRSPTAANPDMSLPYSSWNKGRKPNLSNLRVFGC 680
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A8J6D4G9_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D4G9_9ROSI) HSP 1 Score: 68.9 bits (167), Expect = 8.220e-9 Identity = 68/238 (28.57%), Postives = 102/238 (42.86%), Query Frame = 2
Query: 308 EGNRYAIIFVDDSTRMRCIYFMRSTTEVLGCIKQFLIDAEAKGGGTVRRFRADCGPIQGPKLLSVPHAGKEESRWNLQRRIRSQ*TAWPN---EAGNRSWSEPAACWRHLAHSHLHSGKTRQDACSGHISLPGQPDADQESPGLDLSSPRME*GSCATTRQAAKFRLHAWL--HATLAHARL--CLWSDADSRWPKSKLDPRAQAGCMIGYSRDSPGYRIYFRETRTDISSIHVTFDE 1000
G+RY I+F+DDSTR IYF++S TEV+ +F AE + G +R R+D G + +S +R ++ ++ + T N E NRS + A C + LP A+ + + + + T K AW +LAH R+ CL +SKLD +AQAG ++GYS + GYRI T +S V F+E
Sbjct: 536 NGSRYFILFIDDSTRYCWIYFLKSKTEVVQAFLKFKTAAETETGCKLRSIRSD----NGTEYISAQFQDIC-ARAGIKHQLTNVYTPQQNGVSERKNRSLLDMARCMIFEKN------------------LPKNLWAEAVNTAVYVQN------RLPTKALEQKTPFEAWFGFKPSLAHLRIFGCLCYSQVPAVKRSKLDKKAQAGILVGYSSEKKGYRILDPSTNKVFASRDVVFNE 744
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A5N6M688_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M688_9ASTR) HSP 1 Score: 67.8 bits (164), Expect = 1.960e-8 Identity = 74/274 (27.01%), Postives = 127/274 (46.35%), Query Frame = 3
Query: 63 ETLQLWHQRLGHSGDHVLARLMSDSNTRVP*TDSDLRQFGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPLPVRS--RPKAIAMPLSSWT-------IPQECAAFTSCAVQRRYSDA-SNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPG-KRNRAGIFSAVY-AVNERRGRTKLAIAHGASPLHAGGI----WLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFGCM-HGCTPRWHMH 833
E +LWH R GH H L +L + + +++ E CV+GK H+ + + Q+RA LE++HSD+ GP+PV S R K + + ++ + ++ F+ + + + S +S +L+ G ++E + + C G KR+ F+ V ER+ RT + +A L A G+ W A+ T+V++ N +PTK++ T P+H W+ G P ++ LR FGC+ +G TP H
Sbjct: 454 ELTKLWHCRFGHLHTHALQQLQKNKMVQGLPQIKEIKNC-EGCVLGKQHKLSFQPS-QKRATRILEIIHSDVCGPMPVNSLGRSKYFLLFVDDFSRMTWVYFLEKKSEVFSKFKIFKTMVEKQSGHSVKILRTDRGGEFCSNE--FNMF-------CETHGIKRHLTAPFTPEQNGVCERKNRTVVEMAQ--CMLQAKGMPSYFWA------------EAVATAVHILNLSPTKAVDNKT-PIHMWS-GERPNVNDLRIFGCLCYGLTPAQQRH 700
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A5N6MYY0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MYY0_9ASTR) HSP 1 Score: 67.4 bits (163), Expect = 3.120e-8 Identity = 75/274 (27.37%), Postives = 125/274 (45.62%), Query Frame = 3
Query: 63 ETLQLWHQRLGHSGDHVLARLMSDSNTRVP*TDSDLRQFGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPLPVRS--RPKAIAMPLSSWT-------IPQECAAFTSCAVQRRYSDA-SNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPG-KRNRAGIFSAVY-AVNERRGRTKLAIAHGASPLHAGGI----WLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFGCM-HGCTPRWHMH 833
E +LWH R GH H L +L + + +++ E CV+GK H+ + Q+RA LE++HSD+ GP+PV S R K + + ++ + ++ F+ + + + S +S +L+ G ++E + + C G KR+ F+ V ER+ RT + +A L A G+ W A+ T+VY+ N +PTK + T P+H W+ G P ++ LR FGC+ +G TP H
Sbjct: 1362 ELTKLWHCRFGHLHTHALQQLQKNKMVQGLPQIKEIKNC-EGCVLGKQHKLPFQPS-QKRATRILEIIHSDVCGPMPVNSLGRSKYFLLFVDDFSRMTWVYFLEKKSEVFSKFKIFKTMVEKQSGHSVKILRTDRGGEFCSNE--FNMF-------CETHGIKRHLTAPFTPEQNGVCERKNRTVVEMAQ--CMLQAKGMPSYFWA------------EAVATAVYILNLSPTKVVDNKT-PIHMWS-GERPNVNDLRIFGCLCYGSTPAQQRH 1608
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A445H4S7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445H4S7_GLYSO) HSP 1 Score: 67.0 bits (162), Expect = 3.860e-8 Identity = 71/255 (27.84%), Postives = 110/255 (43.14%), Query Frame = 3
Query: 75 LWHQRLGHSGDHVLARLMSDSNTRVP*TDSDLRQFGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPL--PVRSRPKAIAMPLSSWT-------IPQECAAFTSCAVQRRYSDASNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPGKRNRAGIFSAVY-AVNERRGRTKLAIAHGASPLHAGGI----WLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFG 797
LWHQR GH H L L + R + + + E C++GK HR +T+ RA LEL+H+D+ GP+ P + + + ++ + ++ F V +++ + N S K V SD + R + C + +R +S V+ER+ RT + +A S L G+ W A +T+ VY+ NR PTKS+ T P+ AWN G P LR FG
Sbjct: 400 LWHQRFGHFNSHALKLLHEKNMMRDLPSIKENNEMCEGCLLGKQHRFPFSTSGAWRAKDLLELIHTDVCGPMRTPSHGNNRYFILFIDDFSRMTWVYFLKEKSEVF---GVFKKFKALAENQSG--KRIKVLRSDRDKEYTSREFERFCEDEGI--ERQLTVAYSPQQNGVSERKNRTIMEMAR--SMLKEKGLPNTFWAEAVYTV------------VYILNRCPTKSVKDKT-PIEAWN-GKKPSAKHLRVFG 631
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A8J5Y1I6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y1I6_9ROSI) HSP 1 Score: 64.3 bits (155), Expect = 2.370e-7 Identity = 64/235 (27.23%), Postives = 99/235 (42.13%), Query Frame = 2
Query: 308 EGNRYAIIFVDDSTRMRCIYFMRSTTEVLGCIKQFLIDAEAKGGGTVRRFRADCGP--IQGPKLLSVPHAGKEESRWNLQRRIRSQ*TAWPNEAGNRSWSEPAACWRHLAHSHLHSGKTRQDACSGHISLPGQPDADQESPGLDLSSPRME*GSCATTRQAAKFRLHAWLHATLAHARL--CLWSDADSRWPKSKLDPRAQAGCMIGYSRDSPGYRIYFRETRTDISSIHVTFDE 1000
GNRY I+F+DDSTR IYF+++ +EV+ +F AE + G ++ R+D G I AG + N+ ++ +E N+S + A+C L +L + A + P + L+ +P F ++LAH R+ CL +SK D RAQ G ++GYS + GYRI T +S V F+E
Sbjct: 7 NGNRYFILFIDDSTRYCWIYFLKNKSEVVQAFLKFKTVAETETGCKLKFIRSDNGSEYISAQFQAICARAGIKHQLTNVYTPQQNG----VSERKNKSLLDMASCM--LFEKNLPKNLWAEAANTAVYVQNRLP-----TKALEQKTP---------------FEACFGFKSSLAHLRIFGCLCYSQVPSVKRSKFDKRAQVGILVGYSLEKKGYRILDPSTNKVFASKDVVFNE 215
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A8J5Y992_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y992_9ROSI) HSP 1 Score: 64.3 bits (155), Expect = 2.730e-7 Identity = 71/254 (27.95%), Postives = 106/254 (41.73%), Query Frame = 3
Query: 63 ETLQLWHQRLGHSGDHVLARLMSDSNTRVP*TDSDLRQFGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPLPVRSRPKAIAMPLSSWTIPQECAAF-----TSCAVQRRYSDASNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPG-KRNRAGIFSAVY-AVNERRGRTKLAIAHGASPLHAGGIWLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFGCM 803
E +LWHQRLGH+ +AR++S E C MGK R T RA S+LELVHSD+ GP+ S L + C + + A A+ + + K + + + +E +++A C G K ++++ V ER+ R+ L +A L L + A++T+VYL NR PTK+L T P W G P + LR FGC+
Sbjct: 396 ENTKLWHQRLGHANFKSMARMVSKEMVENFTKSVQNENVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNRYFILFINDSTRYCWIYFLKHKSEVAQVFMKFKAAVETETGCKIKTIRSDNGTEYTSAQFQAI----CNDAGIKHQLTNVYTSQQNGVCERKNRSLLDMAR----------CLLFEKKLPKNLWAEAVNTAVYLQNRLPTKALEQKT-PFEGWF-GFKPSVQHLRVFGCL 633
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A8J5ZMM1_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMM1_9ROSI) HSP 1 Score: 64.3 bits (155), Expect = 2.760e-7 Identity = 66/238 (27.73%), Postives = 100/238 (42.02%), Query Frame = 2
Query: 308 EGNRYAIIFVDDSTRMRCIYFMRSTTEVLGCIKQFLIDAEAKGGGTVRRFRADCGPIQGPKLLSVPHAGKEESRWNLQRRIRSQ*TAWPN---EAGNRSWSEPAACWRHLAHSHLHSGKTRQDACSGHISLPGQPDADQESPGLDLSSPRME*GSCATTRQAAKFRLHAWL--HATLAHARL--CLWSDADSRWPKSKLDPRAQAGCMIGYSRDSPGYRIYFRETRTDISSIHVTFDE 1000
G+RY I+F+DDSTR IYF++S TEV+ +F AE + G + R+D G + +S +R ++ ++ + T N E NRS + A C + LP A+ + + + + T K AW +LAH R+ CL +SKLD +AQA ++GYS + GYRI T +S V F+E
Sbjct: 478 NGSRYFILFIDDSTRYCWIYFLKSKTEVVQAFLKFKTAAETETGCKLSSIRSD----NGTEYISAQFQDIC-ARAGIKHQLTNVYTPQQNGVSERKNRSLLDMARCMIFEKN------------------LPKNLWAEAVNTAVYVQN------RLPTKALEQKTPFEAWFGFKPSLAHLRIFGCLCYSQVPAVKRSKLDKKAQASILVGYSSEKKGYRILDPSTNKVFASRDVVFNE 686
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A8J5XPH4_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XPH4_9ROSI) HSP 1 Score: 63.9 bits (154), Expect = 3.510e-7 Identity = 65/248 (26.21%), Postives = 100/248 (40.32%), Query Frame = 3
Query: 60 AETLQLWHQRLGHSGDHVLARLMSDSNTRVP*TDSDLRQFGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPLPVRSRPKAIAMPLSSWTIPQECAAFTSCAVQRRYSDASNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPGKRNRAGIFSAVYAVNERRGRTKLAIAHGASPLHAGGIWLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFGCM 803
+E +LWHQRLGH+ +A+++S E C MGK R T RA S+LELVHSD+ GP+ R ++++ +C C ++ SD +S + + + Y Q V+ER+ R+ + +A L L + A++T+VY+ NR PTK+L T P AW G P L ++ FGC+
Sbjct: 304 SEDSKLWHQRLGHANFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPM----RTESLSGNRYFILFIDDC-----CKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQ-------------------NGVSERKNRSLMDMAR----------CLLFEKNLPKTMWAKAVNTAVYIQNRLPTKALAHKT-PFEAWF-GFNPSLAHMKVFGCL 511
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Match: A0A5B7B4M6_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B4M6_DAVIN) HSP 1 Score: 63.9 bits (154), Expect = 3.710e-7 Identity = 68/256 (26.56%), Postives = 109/256 (42.58%), Query Frame = 3
Query: 75 LWHQRLGHSGDHVLARLMSDSNTRVP*TDSDLRQFGEACVMGKSHRTNTNTAAQQRAISRLELVHSDIFGPL--PVRSRPKAIAMPLSSWT-------IPQECAAFTSCAVQRRYSDASNNSSSMLKPRAVGPSDASEPIVDRYRAQSCFPCRMPGKRNRAGIFSAVYAVNERRGRTKLAIAHGASPLHAGGI----WLTATFTLGRRGRMHALDTSVYLANRTPTKSLPGWTCPLHAWNRGAAPPLDKLRNFGCM 803
LWH+R GH H L L + + +++ E C +GK HR + RA LELVH+D+ GP+ P ++ + + + +T + Q+ F ++ S S +K SD + Q C M ++ G V+ER+ +T + +A S LH G+ W A +T +VYL NR+PTK++ T P+ AW+ G P + L+ FGC+
Sbjct: 484 LWHRRFGHLNFHNLKLLHRKNMVQGLPNVEEIQDVCEGCALGKHHRQSFPKGVAWRAKEMLELVHTDVCGPMQTPSHAQNRYFILFIDDYTRMTWVYFMRQKSEVFV--IFKKFKSLVEKQSGHFIKTLR---SDRGKEYNSNEFNQFCEDEGME-RQLTVGYTPQQNGVSERKNQTVMEMAK--SILHEKGLPKSFWAEAVYT------------AVYLINRSPTKAVWNQT-PIEAWS-GRKPSIRHLKVFGCV 717 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7491.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7491.1.1 >prot_P-wetherbeei_contig7491.1.1 ID=prot_P-wetherbeei_contig7491.1.1|Name=mRNA_P-wetherbeei_contig7491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp MGKSHRTNTNTAAQQRAISRLELVHSDIFGPLPVRSRPKAIAMPLSSWTIback to top mRNA from alignment at P-wetherbeei_contig7491:658..1913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7491.1.1 ID=mRNA_P-wetherbeei_contig7491.1.1|Name=mRNA_P-wetherbeei_contig7491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1256bp|location=Sequence derived from alignment at P-wetherbeei_contig7491:658..1913+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7491:658..1913+ >mRNA_P-wetherbeei_contig7491.1.1 ID=mRNA_P-wetherbeei_contig7491.1.1|Name=mRNA_P-wetherbeei_contig7491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig7491:658..1913+ (Phaeothamnion wetherbeei SAG_119_79)back to top |