mRNA_P-wetherbeei_contig7489.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7489.2.1
Unique NamemRNA_P-wetherbeei_contig7489.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: W4FM79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FM79_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.110e-7
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   58 TKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            T + HL  ++L ++PA +F +  S L RLDLGFN++  +P+AI Q T+L+ LW N+
Sbjct:   16 TGLLHLAQKRLRSVPADLFRLNFSALFRLDLGFNQIQTLPDAIGQLTSLDSLWLND 71
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: W4FNV6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNV6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.600e-7
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   58 TKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            T + HL  ++L ++PA +F +  S L RLDLGFN++  +P+AI Q T+L+ LW N+
Sbjct:   16 TGLLHLAQKRLRSVPADLFRLNFSALFRLDLGFNQIQTLPDAIGQLTSLDSLWLND 71
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: A0A397A1Y8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A1Y8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.630e-7
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   58 TKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            T + HL  ++L ++PA +F +  S L RLDLGFN++  +P+AI Q T+L+ LW N+
Sbjct:   13 TGLLHLAQKRLRSVPADLFRLNFSALFRLDLGFNQIQTLPDAIGQLTSLDSLWLND 68
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: A0A397DNI5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DNI5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.720e-7
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   58 TKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            T + HL  ++L ++PA +F +  S L RLDLGFN++  +P+AI Q T+L+ LW N+
Sbjct:   13 TGLLHLAQKRLRSVPADLFRLNFSALFRLDLGFNQIQTLPDAIGQLTSLDSLWLND 68
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: A0A024T8M2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8M2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.860e-7
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   58 TKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            T + HL  R+L  +P  +F +  S L RLDLGFN +  IP+AI Q T+L+ LW N+
Sbjct:   26 TGLLHLAQRRLRNVPTDLFRLNYSALYRLDLGFNHIQTIPDAIGQLTSLDALWLND 81
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: A0A024T9S9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9S9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.180e-7
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   58 TKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            T + HL  R+L  +P  +F +  S L RLDLGFN +  IP+AI Q T+L+ LW N+
Sbjct:   26 TGLLHLAQRRLRNVPTDLFRLNYSALYRLDLGFNHIQTIPDAIGQLTSLDALWLND 81
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: T0SAD5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SAD5_SAPDV)

HSP 1 Score: 54.3 bits (129), Expect = 1.590e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   52 QRTKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            ++T + HL    L A+P+ +F +  S L RLDLGFN + V+P+AI Q  ALE LW N+
Sbjct:   12 KQTGLLHLVQLNLRAVPSDLFRLNFSALYRLDLGFNHVRVLPDAIGQLAALEFLWLND 69
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: T0SH23_SAPDV (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0SH23_SAPDV)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   52 QRTKMAHLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            ++T + HL    L A+P+ +F +  S L RLDLGFN + V+P+AI Q  ALE LW N+
Sbjct:   12 KQTGLLHLVQLNLRAVPSDLFRLNFSALYRLDLGFNHVRVLPDAIGQLAALEFLWLND 69
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BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Match: A0A485LD80_9STRA (Aste57867_19096 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD80_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.320e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   70 HLGMRQLEAIPASVFPVA-SVLVRLDLGFNRLHVIPEAIAQFTALEQLWANN 222
            HL   +L + PA +F +  S L RLDLGFN +  +P+AI Q T+LEQLW N+
Sbjct:   17 HLAQSRLRSAPADLFRLNFSSLYRLDLGFNLIRTLPDAIGQLTSLEQLWIND 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7489.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
W4FM79_9STRA2.110e-744.64Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FNV6_9STRA2.600e-744.64Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397A1Y8_9STRA2.630e-744.64Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397DNI5_9STRA2.720e-744.64Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A024T8M2_9STRA8.860e-746.43Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024T9S9_9STRA9.180e-746.43Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
T0SAD5_SAPDV1.590e-646.55Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
T0SH23_SAPDV1.700e-646.55Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A485LD80_9STRA2.320e-650.00Aste57867_19096 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7489contigP-wetherbeei_contig7489:2587..2975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008881000.1
Preferred nameLRCH1
PFAMsCH,LRR_8
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
Exons2
Evalue1.25e-07
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
EC2.3.2.27
Descriptionregulation of response to stimulus
Cds size261
COG categoryU
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.3385904-UTR-P-wetherbeei_contig7489:2586..26011683186984.3385904-UTR-P-wetherbeei_contig7489:2586..2601Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7489 2587..2601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.3484647-CDS-P-wetherbeei_contig7489:2601..26341683186984.3484647-CDS-P-wetherbeei_contig7489:2601..2634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7489 2602..2634 +
1683186984.3564048-CDS-P-wetherbeei_contig7489:2747..29751683186984.3564048-CDS-P-wetherbeei_contig7489:2747..2975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7489 2748..2975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7489.2.1prot_P-wetherbeei_contig7489.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7489 2602..2975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7489.2.1

>prot_P-wetherbeei_contig7489.2.1 ID=prot_P-wetherbeei_contig7489.2.1|Name=mRNA_P-wetherbeei_contig7489.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MAPSSDPAAAMMQRTKMAHLGMRQLEAIPASVFPVASVLVRLDLGFNRLH
VIPEAIAQFTALEQLWANNNPIGEVHPAIAKCQRLKV
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mRNA from alignment at P-wetherbeei_contig7489:2587..2975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7489.2.1 ID=mRNA_P-wetherbeei_contig7489.2.1|Name=mRNA_P-wetherbeei_contig7489.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=389bp|location=Sequence derived from alignment at P-wetherbeei_contig7489:2587..2975+ (Phaeothamnion wetherbeei SAG_119_79)
GGGATCTACAGACACATGGCGCCCAGCTCAGACCCTGCTGCGGCAATGGT
GAATGAGGGAAACGGCGAACTTGGCAAAGAAAATGTTTCATATTTAGGTT
TTGAGAAAGTGAGACCTGATCCTCAACCCATCCTCTTCCAACTTGTGCAC
GCAAGAAACAGATGCAGCGGACGAAGATGGCGCACTTAGGAATGCGGCAG
CTGGAGGCAATCCCTGCTTCGGTCTTTCCCGTGGCCTCTGTGCTCGTGCG
CCTGGATCTCGGCTTCAACAGACTGCACGTAATTCCCGAAGCGATTGCGC
AGTTCACCGCCCTAGAACAGCTGTGGGCAAACAACAACCCGATCGGTGAG
GTGCACCCGGCGATCGCAAAGTGCCAGCGGCTGAAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7489:2587..2975+

>mRNA_P-wetherbeei_contig7489.2.1 ID=mRNA_P-wetherbeei_contig7489.2.1|Name=mRNA_P-wetherbeei_contig7489.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig7489:2587..2975+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCCAGCTCAGACCCTGCTGCGGCAATGATGCAGCGGACGAAGAT
GGCGCACTTAGGAATGCGGCAGCTGGAGGCAATCCCTGCTTCGGTCTTTC
CCGTGGCCTCTGTGCTCGTGCGCCTGGATCTCGGCTTCAACAGACTGCAC
GTAATTCCCGAAGCGATTGCGCAGTTCACCGCCCTAGAACAGCTGTGGGC
AAACAACAACCCGATCGGTGAGGTGCACCCGGCGATCGCAAAGTGCCAGC
GGCTGAAGGTG
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