mRNA_P-wetherbeei_contig7450.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7450.3.1
Unique NamemRNA_P-wetherbeei_contig7450.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7450.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7450contigP-wetherbeei_contig7450:2027..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size716
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186982.4694571-UTR-P-wetherbeei_contig7450:2026..20741683186982.4694571-UTR-P-wetherbeei_contig7450:2026..2074Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7450 2027..2074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186982.4778562-CDS-P-wetherbeei_contig7450:2074..25491683186982.4778562-CDS-P-wetherbeei_contig7450:2074..2549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7450 2075..2549 -
1683186982.4863048-CDS-P-wetherbeei_contig7450:2833..30241683186982.4863048-CDS-P-wetherbeei_contig7450:2833..3024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7450 2834..3024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7450.3.1prot_P-wetherbeei_contig7450.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7450 2075..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7450.3.1

>prot_P-wetherbeei_contig7450.3.1 ID=prot_P-wetherbeei_contig7450.3.1|Name=mRNA_P-wetherbeei_contig7450.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=222bp
NDQFGLKTGVLEKTTQKCLFPIRFLVSRRQHDVLARFLLHRIAACQSFKT
TCHAPTNASSRLKKQHADADTSADAPADGEAAGGNTSVDAGPGDDAAQPH
RRALPLLGAQHEAEVPEVLGLRQGVRHDPGHLRGQAQCPRREARARPFGM
RAALRQPSRGTFCFKRAGAGRGKRACSSYCEILCSMAITASDCAHHGVRA
SLGRPSVHSRSGKEDAFRAAG*
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mRNA from alignment at P-wetherbeei_contig7450:2027..3024-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7450.3.1 ID=mRNA_P-wetherbeei_contig7450.3.1|Name=mRNA_P-wetherbeei_contig7450.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=998bp|location=Sequence derived from alignment at P-wetherbeei_contig7450:2027..3024- (Phaeothamnion wetherbeei SAG_119_79)
AATGACCAGTTTGGACTGAAAACCGGAGTATTGGAAAAAACAACGCAAAA
ATGCCTTTTTCCCATTCGTTTTTTGGTTTCTCGACGGCAGCATGACGTGC
TCGCGCGATTTCTTTTGCATCGGATAGCTGCTTGCCAGAGCTTCAAAACG
ACGTGTCATGCTCCGACAAACGCCAGTAGTCGACTCAAAAAGTAAATAAT
TTTGGGCCTGTTGCACGAATGTTGGCCATGAACGGCTTGTATTGGTAGCA
GTCGCCGGCCCCCGCTGGTGGCTGTTCTCCTCCTGATGTTAACTGTCCAA
TAGCCGGCTGTATTGGCTGGTGGATGTGCTCGCCATGGCCGGTCAGCTGT
AACCGCTGCAGCCGCCGCTGTCCTACATGCCTCGTATCGTTGCGTGGGTT
GTCGTATGCTGCCCCCTGATCCACCCATATTCTTGGCTGTTTTCCGGATC
TCTTGTCTCGCACCACCGGACGCAGGCAGCATGCCGACGCCGACACCTCA
GCCGACGCCCCAGCCGATGGCGAAGCCGCAGGGGGCAACACCTCGGTCGA
CGCGGGCCCTGGTGACGACGCTGCGCAGCCTCATCGACGCGCGCTGCCCC
TGCTGGGAGCCCAACATGAAGCGGAAGTACCAGAAGTACTTGGTTTGCGT
CAAGGAGTTCGTCACGACCCTGGACATCTCCGAGGCCAGGCACAGTGCCC
TCGCAGAGAAGCTCGGGCTCGGCCATTCGGAATGCGAGCTGCTTTGAGGC
AGCCAAGTAGGGGGACATTCTGCTTCAAGAGAGCCGGTGCTGGCCGTGGA
AAGCGAGCCTGTTCCTCGTACTGCGAGATTTTGTGTTCCATGGCTATAAC
TGCCAGTGATTGCGCGCACCACGGAGTACGCGCATCGCTCGGCCGGCCAA
GCGTCCATTCGAGATCGGGGAAGGAAGATGCGTTTAGGGCGGCGGGGTAG
CAGGCGTACGGCCAGTAAGGAGCAGCACGCAGCAGAGGCGTGGTGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7450:2027..3024-

>mRNA_P-wetherbeei_contig7450.3.1 ID=mRNA_P-wetherbeei_contig7450.3.1|Name=mRNA_P-wetherbeei_contig7450.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig7450:2027..3024- (Phaeothamnion wetherbeei SAG_119_79)
AATGACCAGTTTGGACTGAAAACCGGAGTATTGGAAAAAACAACGCAAAA
ATGCCTTTTTCCCATTCGTTTTTTGGTTTCTCGACGGCAGCATGACGTGC
TCGCGCGATTTCTTTTGCATCGGATAGCTGCTTGCCAGAGCTTCAAAACG
ACGTGTCATGCTCCGACAAACGCCAGTAGTCGACTCAAAAAGCAGCATGC
CGACGCCGACACCTCAGCCGACGCCCCAGCCGATGGCGAAGCCGCAGGGG
GCAACACCTCGGTCGACGCGGGCCCTGGTGACGACGCTGCGCAGCCTCAT
CGACGCGCGCTGCCCCTGCTGGGAGCCCAACATGAAGCGGAAGTACCAGA
AGTACTTGGTTTGCGTCAAGGAGTTCGTCACGACCCTGGACATCTCCGAG
GCCAGGCACAGTGCCCTCGCAGAGAAGCTCGGGCTCGGCCATTCGGAATG
CGAGCTGCTTTGAGGCAGCCAAGTAGGGGGACATTCTGCTTCAAGAGAGC
CGGTGCTGGCCGTGGAAAGCGAGCCTGTTCCTCGTACTGCGAGATTTTGT
GTTCCATGGCTATAACTGCCAGTGATTGCGCGCACCACGGAGTACGCGCA
TCGCTCGGCCGGCCAAGCGTCCATTCGAGATCGGGGAAGGAAGATGCGTT
TAGGGCGGCGGGGTAG
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