mRNA_P-wetherbeei_contig7403.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7403.1.1
Unique NamemRNA_P-wetherbeei_contig7403.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7403.1.1 vs. uniprot
Match: A0A835Z3Y3_9STRA (Ribonuclease III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.110e-17
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VALMEKSLRRPANERLEMFGDAYLKLSMTLTAYLAEPDLLEEGLMSELRSNLVSNARLLQNARAAGLLPFIHPPRSLLCQPWL-HWLPPL 267
            V  +E ++RRPANERLE  GDA+LK  M L      P L EEGL+SE RSNLV NARL + A    L+ ++HP RS+L +P+L HW+P L
Sbjct:   50 VESVEVAVRRPANERLETLGDAWLKAYMCLFIMQTRPILQEEGLISEFRSNLVCNARLTKEAVKCDLVSYMHPLRSMLGRPFLEHWMPAL 139
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BLAST of mRNA_P-wetherbeei_contig7403.1.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-16
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 VALMEKSLRRPANERLEMFGDAYLKLSMTLTAYLAEPDLLEEGLMSELRSNLVSNARLLQNARAAGLLPFIHPPRSLLCQPWLHWLPPL 267
            ++L++ SLRRP NERLE  GDA+L        +  +P + EEG+M+ LR N+VSNARL++ A   GL  FI+PPR++L QP+  W P L
Sbjct: 1028 LSLLDCSLRRPINERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTFLRKNIVSNARLVKCADGRGLREFIYPPRTILGQPFEMWAPSL 1116
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BLAST of mRNA_P-wetherbeei_contig7403.1.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.150e-16
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 VALMEKSLRRPANERLEMFGDAYLKLSMTLTAYLAEPDLLEEGLMSELRSNLVSNARLLQNARAAGLLPFIHPPRSLLCQPWLHWLPPL 267
            +AL++ SLRRP NERLE  GDA+L        ++ +P L+EEG+M+ LR N+VSNARLL+ A   GL  F++PPRS+L +P+  W P L
Sbjct: 1801 MALLDCSLRRPVNERLETLGDAWLNY---YAGFVDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSL 1886
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BLAST of mRNA_P-wetherbeei_contig7403.1.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.020e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   31 PANERLEMFGDAYLKLSMTLTAYLAEPDLLEEGLMSELRSNLVSNARLLQNARAAGLLPFIHPPRSLLCQPWLHWLPPL 267
            P NERLE  GDA+L        +  +P L+EEG+M+ LR N+VSNARLL+ A   GL  F++PPRS+L +P+  W P L
Sbjct: 1162 PVNERLETLGDAWLNYYAGFVVFQDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSL 1240
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z3Y3_9STRA1.110e-1753.33Ribonuclease III domain-containing protein n=1 Tax... [more]
A0A2S1PRV6_FUCSE1.550e-1648.31Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
A0A6H5KQM7_9PHAE2.150e-1650.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI2.020e-1349.37Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7403contigP-wetherbeei_contig7403:2167..2722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZW2
PFAMsDEAD,Dicer_dimer,Helicase_C
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.94e-14
EggNOG OGsCOG0571@1|root,KOG0701@2759|Eukaryota
Descriptionribonuclease III activity
Cds size258
COG categoryK
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.188931-UTR-P-wetherbeei_contig7403:2166..21751683186979.188931-UTR-P-wetherbeei_contig7403:2166..2175Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7403 2167..2175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.2020123-CDS-P-wetherbeei_contig7403:2175..22771683186979.2020123-CDS-P-wetherbeei_contig7403:2175..2277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7403 2176..2277 +
1683186979.2114398-CDS-P-wetherbeei_contig7403:2566..27221683186979.2114398-CDS-P-wetherbeei_contig7403:2566..2722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7403 2567..2722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7403.1.1prot_P-wetherbeei_contig7403.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7403 2176..2722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7403.1.1

>prot_P-wetherbeei_contig7403.1.1 ID=prot_P-wetherbeei_contig7403.1.1|Name=mRNA_P-wetherbeei_contig7403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MEKSLRRPANERLEMFGDAYLKLSMTLTAYLAEPDLLEEGLMSELRSNLV
SNARLLQNARAAGLLPFIHPPRSLLCQPWLHWLPPL
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mRNA from alignment at P-wetherbeei_contig7403:2167..2722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7403.1.1 ID=mRNA_P-wetherbeei_contig7403.1.1|Name=mRNA_P-wetherbeei_contig7403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=556bp|location=Sequence derived from alignment at P-wetherbeei_contig7403:2167..2722+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGCTGATGGAGAAGAGCCTGCGGCGGCCGGCCAACGAGCGGCTCGA
GATGTTCGGCGACGCCTACCTGAAGCTGTCCATGACGCTGACGGCGTACC
TCGCCGAGCCAGTGAGTTTCGGGCTGCTGGCGTGGTTGAAACGGGTTGAA
GGTTTGAGGAGGCAGTCCAAACGACTGCGGCTTTTGGTAACATCTCAAAA
GCCGATTTTTGCTTGTTTTCCTCTCACTGCCTTTTAGCAACATAGCCTGT
AATATATGTTTCGCCTGGCGCGAAAAGAATTCGGTGTCGCGCTCAGCTCA
CTGGGCGGTTCCGCTCAGCCTTCGAACCAAACAAATATTGCGGACCCTCA
AACCCCAAATTTTGACATCTTGGATTCGGACCCACAACGTAACCCGCCAG
GACCTGCTGGAGGAAGGCCTGATGAGCGAGCTGCGCTCCAACCTCGTCAG
CAATGCGCGCCTCTTACAGAATGCGCGCGCGGCAGGCCTGCTGCCGTTCA
TCCACCCGCCGCGTAGCCTGCTCTGCCAGCCATGGCTGCACTGGTTGCCG
CCGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7403:2167..2722+

>mRNA_P-wetherbeei_contig7403.1.1 ID=mRNA_P-wetherbeei_contig7403.1.1|Name=mRNA_P-wetherbeei_contig7403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig7403:2167..2722+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAAGAGCCTGCGGCGGCCGGCCAACGAGCGGCTCGAGATGTTCGG
CGACGCCTACCTGAAGCTGTCCATGACGCTGACGGCGTACCTCGCCGAGC
CAGACCTGCTGGAGGAAGGCCTGATGAGCGAGCTGCGCTCCAACCTCGTC
AGCAATGCGCGCCTCTTACAGAATGCGCGCGCGGCAGGCCTGCTGCCGTT
CATCCACCCGCCGCGTAGCCTGCTCTGCCAGCCATGGCTGCACTGGTTGC
CGCCGCTC
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