mRNA_P-wetherbeei_contig7333.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7333.3.1
Unique NamemRNA_P-wetherbeei_contig7333.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: D7FJV0_ECTSI (Ribosome production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.950e-87
Identity = 143/258 (55.43%), Postives = 185/258 (71.71%), Query Frame = 1
Query:    1 MPSRGIQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            MPSR I PKQ +AKA R +R +EP++ E+ K A+ + GRKTS  VT ALKD+Y LKSPDA+M ++KND NP ED TS EFLM KN D SLF F SHNKKRPNN+VLGRTFD HMLDMIELG+  ++ + E+  G  KRVGSKPA VF G++W  EE Y+KLQNLL DF RG VV+ ++L+GLDH +V   A+D+V +R Y +  +R+             +  P+ +L  MGP +D Q+RRTSFAA+DLW+A+ K+P+
Sbjct:    1 MPSRNIIPKQGNAKALRAKRKREPQVHENAKTAIIIKGRKTSQDVTDALKDIYRLKSPDAVMFSKKNDTNPMEDETSAEFLMSKN-DCSLFCFGSHNKKRPNNVVLGRTFDGHMLDMIELGLVQYRGLGELA-GLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLLDFFRGQVVNEVALAGLDHCVVCTAAQDKVYVRHYHIGFQRS------------GSKIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPR 244          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A835ZC15_9STRA (Ribosome production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.470e-77
Identity = 133/261 (50.96%), Postives = 176/261 (67.43%), Query Frame = 1
Query:    1 MPSRGIQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDR-VLMRGYSVALRRATAGSGAAXXXXXXAGT--PAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            MP + I PKQ     RR + A+ PK+VE+TK AL + G+KTS+ ++  L D+Y +K P + ML R+NDL PF+D T +EFL  KN DSSLF F SHNKKRPNN+VLGRTFD H+LDM+E+G+  ++ I E + G+ KRVGSKPA++F GD W+NEE Y+KL+NLL DF RGDVV S+SL+GLDH +V    E   +L+R Y +A +R+              GT  P  +L  MGP  D  +RR  FAA DLW+ A ++PK
Sbjct:    1 MPRQNIAPKQDKGHVRRAKEARAPKVVENTKTALCIRGKKTSESISTLLTDMYRMKKPFSRMLGRRNDLTPFDDETGIEFLTTKN-DSSLFLFGSHNKKRPNNIVLGRTFDGHILDMMEMGVTAYRGIDEFR-GSAKRVGSKPAMLFEGDLWENEEKYRKLRNLLIDFFRGDVVDSVSLAGLDHVMVVTAVEGGPILLRHYLIAFKRS--------------GTKVPHIQLERMGPHADLVLRRVKFAATDLWKVATRKPK 245          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A7S2UZD7_9STRA (Ribosome production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA)

HSP 1 Score: 231 bits (590), Expect = 5.210e-72
Identity = 124/255 (48.63%), Postives = 166/255 (65.10%), Query Frame = 1
Query:   16 IQPKQPSAKAR--RIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            IQPK+   KAR  R+QR + PKL E+TK +L L G KTS ++  ALKD++ +K+P + ML+R ND++PFED + +EFL  KN D SLFAF SHNKKRP+NLVLGRT+D  +LDM ELG+E F+S+ E K   PKR+GSKP +VF GD W+ E   + L+NLL DF RGD V S++L GLDH +       +V +R Y +A +++                P  +L   GP +D  +RR+   + DLWRAA KQPK
Sbjct:    6 IQPKETRKKARVIRMQRERAPKLKENTKSSLVLRGNKTSQIIFEALKDIHRVKNPHSRMLSRNNDIHPFEDESKMEFLCEKN-DCSLFAFGSHNKKRPHNLVLGRTYDGRLLDMFELGVEKFKSVVETKAKAPKRIGSKPCIVFQGDEWEVEGPLKSLKNLLLDFFRGDEVDSVALPGLDHVMACTAVGGKVYLRHYHIAFKKS------------GGKIPRVQLESTGPSLDLVLRRSKLPSPDLWRAACKQPK 247          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A1S3HGH2_LINUN (Ribosome production factor 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGH2_LINUN)

HSP 1 Score: 219 bits (557), Expect = 6.860e-67
Identity = 112/245 (45.71%), Postives = 168/245 (68.57%), Query Frame = 1
Query:   40 KARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            +++R   ++E KL E+TK A+F+ G +TS++V++ LKD+Y LK PDA+M  +KN + P ED TSLEFL  +N D+SLF F SH KKRPNN+V+GR FD H+LDM+ELGIE ++S+QE   G    +GSKP L+F G+ ++NE  YQ+L+NLL DF RG V+ ++ L+GL+H L+F   + ++ +R Y V ++++             + TP  EL  +GP +D+ +RRT  A+ DL++ A +QPK
Sbjct:   28 RSKRYLESRESKLTENTKTAMFIRGGRTSEVVSQTLKDMYFLKKPDAVMFQKKNIMRPLEDQTSLEFLSDRN-DASLFMFGSHQKKRPNNVVIGRFFDFHVLDMVELGIEKYKSMQEFHVGKFS-LGSKPCLLFAGEAFENEPEYQRLKNLLIDFFRGPVIENIRLAGLEHVLLFTTLDGKIYLRNYKVQMKKS------------GSRTPRIELEEIGPSVDFSMRRTRLASDDLYKRARQQPK 258          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: UPI0018650694 (ribosome production factor 2 homolog n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018650694)

HSP 1 Score: 217 bits (552), Expect = 2.890e-66
Identity = 117/253 (46.25%), Postives = 164/253 (64.82%), Query Frame = 1
Query:   16 IQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            ++PK  + +++R  + +EPKL+E+ K A+ + G  TS+ VT+ALKD+Y LK P A++  +KN   PFED TSLEF   K  D SLF F SHNKKRPNNL+ GR FD H+LDMIELGIE F S++E+K+ T    G+KP LVF G+ +  +  Y++L+++LTDF RG  V S+ L+GL+H L F   E ++ MR Y V L+++               TP  EL  MGP  D+ +RRT  A+ DL++ A +QPK
Sbjct:    8 VKPK--TKRSKRFLQGREPKLIENVKTAMLIKGGNTSETVTQALKDIYALKKPSAVLYKKKNITRPFEDQTSLEFF-SKKSDCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMIELGIEKFTSLKEIKKSTCPE-GTKPLLVFAGEAFDTDNEYKRLRSILTDFFRGPTVPSVRLAGLEHLLHFTALEGKIYMRSYKVLLKKS------------GCRTPRIELEEMGPSFDFVMRRTHLASDDLYKTAHRQPK 244          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A2D4BFM4_PYTIN (Ribosome production factor 2 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFM4_PYTIN)

HSP 1 Score: 217 bits (553), Expect = 4.510e-66
Identity = 119/251 (47.41%), Postives = 160/251 (63.75%), Query Frame = 1
Query:   22 PKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            PK+  A   R  + +EPKLVE+TK+ L + G KTS+ VT+ L+DL +LK+P+  M+++KND++PF+D T +EFL  KN D+SLF   SH KKRPNNLVLGRTFD H+LDM+EL    ++SI+  +  + K  GSKP  VF GD W   E++ KL+NLL D  RG VV S+++ GLDHA+V    +DRV  R YS+A ++A                P  EL  MGP  D   RR   A+ DL +AA K+PK
Sbjct:   40 PKRQKAHVVRALKDREPKLVENTKKLLVMRGNKTSEEVTKLLRDLRMLKAPEVKMMSKKNDIHPFDDETKVEFLTQKN-DTSLFMVGSHTKKRPNNLVLGRTFDGHILDMMELEFTNYKSIEAFQCKSKKAPGSKPCFVFTGDLWDTHELFGKLKNLLIDVFRGTVVDSVNVKGLDHAIVCTAWKDRVFFRSYSIAFKKAXGVH------------PRVELDEMGPRFDLHFRRHKLASADLLKAATKKPK 277          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A0E9WZ85_ANGAN (Ribosome production factor 2 homolog n=1 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9WZ85_ANGAN)

HSP 1 Score: 216 bits (550), Expect = 5.780e-66
Identity = 119/258 (46.12%), Postives = 166/258 (64.34%), Query Frame = 1
Query:    1 MPSRGIQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            MP R    K  + +++R  +++E KL+E+ K A+ + G  TS+ VT+ALKD+Y LK P+A+M  +KN   PFED TSLEF   K  D SLF F SHNKKRPNNL+ GR FD H+LDMIELGIE F S++++K+ T    G+KP LVF G+ +  +  Y++LQ++LTDF RG  V S+ L+GL+H L F   E ++ MR Y+V L+++               TP  EL  MGP  D+ +RRT  A+ DL++ A +QPK
Sbjct:    1 MPQRDGIVKPKTKRSKRFLQSREAKLIENVKNAMIMKGGNTSETVTQALKDIYSLKKPNAVMYKKKNITRPFEDQTSLEFF-SKKADCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMIELGIEKFASLKQIKKNTCPE-GTKPLLVFSGEAFNTDNEYKRLQSVLTDFFRGPSVPSVRLAGLEHLLHFTALEGKIYMRSYTVLLKKS------------GCRTPRIELEEMGPSFDFTLRRTHLASDDLYKTAHRQPK 244          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A1V9ZW29_9STRA (Ribosome production factor 2 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW29_9STRA)

HSP 1 Score: 216 bits (551), Expect = 7.350e-66
Identity = 118/253 (46.64%), Postives = 161/253 (63.64%), Query Frame = 1
Query:   16 IQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            I+PK+  AK  R  + KEPKLVE+TK+ L L G KT++ V   L+DL ++K+PD+  L +KN+L+PF+DA S+EFL  KN D+SLF   S  KKRPNN++ GRTFD H++DMIE+G E F+SI + K  +    GSKP  VF G+ W+  E YQKL+N+L D  RG + + ++L GLDH +V + A++RVL R YS+A   +                P  EL  MGP  D   RR  FA+ DL +AA K+PK
Sbjct:   31 IKPKRVKAKVARAIKHKEPKLVENTKQLLVLRGNKTNEDVNNLLRDLRMIKAPDSKSLAKKNELHPFDDANSVEFLTTKN-DTSLFLLGSSTKKRPNNIIFGRTFDGHLMDMIEMGFENFKSIDDFKIKSKMAPGSKPCFVFSGNEWETIEEYQKLKNILLDTFRGTITTGVNLKGLDHVIVCSAAKNRVLFRHYSIAFTLSNDTH------------PRVELDEMGPRFDLSFRRHKFASADLMKAALKKPK 270          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A6G0XKQ4_9STRA (Ribosome production factor 2 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKQ4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 8.230e-66
Identity = 116/253 (45.85%), Postives = 160/253 (63.24%), Query Frame = 1
Query:   16 IQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            I+PK+  A   R  + KE KLVE+TK+ L L G KT++ V + L+D+ ++K+PDA +L++KN+L+PF+D  S+EFL  KN D+SLF   S  KKRPNNL+ GRTFD H++DM+E+G E F+SI E K  +    GSKP  +F GD W++ EVYQKL+N+  D  RG +V +++L GLDH +V +   +RVL R YS+A    T               P  EL  MGP  D   RR  F + DL +AA K+PK
Sbjct:   23 IKPKRVKASVARALKNKEAKLVENTKQLLVLRGNKTNEDVNQLLRDIKMIKAPDAKVLSKKNELHPFDDPNSIEFLTQKN-DTSLFLLGSSTKKRPNNLIFGRTFDGHIMDMLEMGFENFKSISEFKCKSKMAPGSKPCFLFSGDEWESNEVYQKLKNVFLDIFRGTIVEAINLKGLDHVIVCSAVNNRVLFRHYSIAFGLTTDTH------------PRVELDEMGPRFDLSFRRHKFGSADLMKAACKKPK 262          
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Match: A0A8K1FC18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC18_PYTOL)

HSP 1 Score: 215 bits (548), Expect = 2.940e-65
Identity = 117/251 (46.61%), Postives = 159/251 (63.35%), Query Frame = 1
Query:   22 PKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALKDLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKRPNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGDRWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGYSVALRRATAGSGAAXXXXXXAGTPAAELTLMGPCMDWQVRRTSFAARDLWRAAAKQPK 774
            PK+  A   R  + KEPKLVE+TK  L + G KTSD V + L+DL +LK+PDA M+ +KND++PF+D T +EFL  KN D+SLF   S+ KKRPNNLVLGRTFD H+LD++EL    F+SI + K  + K  GSKPA VF GD+W++ E + KL+NLL D  RG V+  +++ G+DHA+V    +++V  R YS+  ++A                P  EL  MGP  D   RR   A+ DL +AA K+PK
Sbjct:   40 PKRQKAHVVRAIKNKEPKLVENTKGLLIMRGNKTSDEVNKLLRDLRMLKAPDAKMMGKKNDIHPFDDETKIEFLTQKN-DTSLFMVGSNTKKRPNNLVLGRTFDGHILDIMELEFSNFKSIDDFKCKSKKAPGSKPAFVFTGDQWESNETFAKLKNLLIDVFRGTVIEQINVKGIDHAIVCTAWKEKVFFRSYSIDFKKADGVH------------PRVELEEMGPRFDLHFRRQKLASADLMKAATKKPK 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7333.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJV0_ECTSI2.950e-8755.43Ribosome production factor 2 homolog n=2 Tax=Ectoc... [more]
A0A835ZC15_9STRA1.470e-7750.96Ribosome production factor 2 homolog n=1 Tax=Tribo... [more]
A0A7S2UZD7_9STRA5.210e-7248.63Ribosome production factor 2 homolog n=1 Tax=Fibro... [more]
A0A1S3HGH2_LINUN6.860e-6745.71Ribosome production factor 2 homolog n=2 Tax=Lingu... [more]
UPI00186506942.890e-6646.25ribosome production factor 2 homolog n=1 Tax=Megal... [more]
A0A2D4BFM4_PYTIN4.510e-6647.41Ribosome production factor 2 homolog n=1 Tax=Pythi... [more]
A0A0E9WZ85_ANGAN5.780e-6646.12Ribosome production factor 2 homolog n=1 Tax=Angui... [more]
A0A1V9ZW29_9STRA7.350e-6646.64Ribosome production factor 2 homolog n=1 Tax=Thrau... [more]
A0A6G0XKQ4_9STRA8.230e-6645.85Ribosome production factor 2 homolog n=1 Tax=Aphan... [more]
A0A8K1FC18_PYTOL2.940e-6546.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7333contigP-wetherbeei_contig7333:1613..2780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJV0
PFAMsBrix
Model size774
Max annot lvl2759|Eukaryota
KEGG koko:K14847
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004611,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008964,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016829,GO:0016830,GO:0016831,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0099402,GO:1901360,GO:1901363
Exons4
Evalue4.84e-88
EggNOG OGsCOG5106@1|root,KOG3031@2759|Eukaryota
Ec32 ortholog descriptionBrix domain
Ec32 orthologEc-10_000560.1
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size774
COG categoryO
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186973.2720144-CDS-P-wetherbeei_contig7333:1612..17681683186973.2720144-CDS-P-wetherbeei_contig7333:1612..1768Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7333 1613..1768 +
1683186973.2823024-CDS-P-wetherbeei_contig7333:1880..20421683186973.2823024-CDS-P-wetherbeei_contig7333:1880..2042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7333 1881..2042 +
1683186973.2908082-CDS-P-wetherbeei_contig7333:2133..23141683186973.2908082-CDS-P-wetherbeei_contig7333:2133..2314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7333 2134..2314 +
1683186973.2992148-CDS-P-wetherbeei_contig7333:2505..27801683186973.2992148-CDS-P-wetherbeei_contig7333:2505..2780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7333 2506..2780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7333.3.1prot_P-wetherbeei_contig7333.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7333 1613..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7333.3.1

>prot_P-wetherbeei_contig7333.3.1 ID=prot_P-wetherbeei_contig7333.3.1|Name=mRNA_P-wetherbeei_contig7333.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MPSRGIQPKQPSAKARRIQRAKEPKLVEDTKRALFLSGRKTSDMVTRALK
DLYLLKSPDALMLTRKNDLNPFEDATSLEFLMGKNHDSSLFAFASHNKKR
PNNLVLGRTFDSHMLDMIELGIEGFQSIQEVKEGTPKRVGSKPALVFLGD
RWQNEEVYQKLQNLLTDFLRGDVVSSLSLSGLDHALVFALAEDRVLMRGY
SVALRRATAGSGAAAAAGAAAGTPAAELTLMGPCMDWQVRRTSFAARDLW
RAAAKQPK
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mRNA from alignment at P-wetherbeei_contig7333:1613..2780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7333.3.1 ID=mRNA_P-wetherbeei_contig7333.3.1|Name=mRNA_P-wetherbeei_contig7333.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-wetherbeei_contig7333:1613..2780+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGCGAGGGATCCAGCCAAAGCAGCCGAGCGCCAAGGCGCGTCG AATCCAACGGGCGAAAGAACCAAAGCTAGTGGAGGACACGAAACGAGCCC TCTTTCTCTCCGGCCGCAAGACGAGCGATATGGTCACTCGAGCTCTGAAA GACCTGGTAAGCCATCGAACCTGTGTCCTGAGCCCGTTGGTTCGAGAAAT GACATACCTGTCTCCCACGTCAATCCGTTTCTCTCTTTGTCTGGCTGTCG CGTCCTTCCTCTCTGCAGTACCTCCTGAAATCCCCGGACGCCTTGATGCT TACGCGCAAGAACGACTTGAATCCCTTCGAGGACGCCACCTCGTTGGAGT TCCTGATGGGAAAAAATCACGACAGCAGCCTCTTCGCCTTTGCGAGCCAC AATAAGAAGAGGCCAAACAACCTCGTCCTGGTGAGGCGCAAACGCGAGTT CCTCCTTTCGGCACGTTATCCATAGCGCTGCTCACTTCTTATCGCCCGCG TGGCCTGCTTTTTGTTTTTAGGGCCGGACCTTCGACAGCCACATGCTGGA CATGATTGAGCTCGGGATTGAGGGCTTCCAGAGCATTCAGGAGGTGAAGG AGGGTACGCCGAAGCGAGTCGGCAGCAAGCCGGCCCTCGTCTTTCTGGGC GACCGCTGGCAGAACGAAGAGGTCTACCAGAAGCTGCAGAACTTGCTCAC CGGTGAGCAAATAAAACGATGTTTAGGTTTCACCATCAATACTCGAAACG ACAGAAGTCGAAAGACAGTTTGAGAAGTGAAGAAGCAATCAGAATATTCA GTGACAGCGGGGCAGCTTCTTCCTCCTTTCTTTCCCCCCGAACCATTTGG CACTTGCCGTTTCATCCATTTGACTCTCTCTCTCAACCGGCAGACTTCCT GCGGGGGGACGTAGTTTCGTCTCTGAGCCTCTCGGGGCTGGACCACGCGC TCGTCTTCGCCCTGGCGGAGGACCGCGTGCTGATGCGCGGCTACAGTGTT GCCCTGCGGCGGGCGACGGCTGGCAGCGGCGCGGCGGCGGCGGCGGGGGC GGCGGCGGGGACACCGGCGGCGGAGCTGACGCTGATGGGGCCGTGCATGG ATTGGCAAGTCCGGCGCACGAGCTTCGCGGCGAGGGACCTCTGGCGGGCG GCCGCCAAGCAGCCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7333:1613..2780+

>mRNA_P-wetherbeei_contig7333.3.1 ID=mRNA_P-wetherbeei_contig7333.3.1|Name=mRNA_P-wetherbeei_contig7333.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig7333:1613..2780+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGCGAGGGATCCAGCCAAAGCAGCCGAGCGCCAAGGCGCGTCG
AATCCAACGGGCGAAAGAACCAAAGCTAGTGGAGGACACGAAACGAGCCC
TCTTTCTCTCCGGCCGCAAGACGAGCGATATGGTCACTCGAGCTCTGAAA
GACCTGTACCTCCTGAAATCCCCGGACGCCTTGATGCTTACGCGCAAGAA
CGACTTGAATCCCTTCGAGGACGCCACCTCGTTGGAGTTCCTGATGGGAA
AAAATCACGACAGCAGCCTCTTCGCCTTTGCGAGCCACAATAAGAAGAGG
CCAAACAACCTCGTCCTGGGCCGGACCTTCGACAGCCACATGCTGGACAT
GATTGAGCTCGGGATTGAGGGCTTCCAGAGCATTCAGGAGGTGAAGGAGG
GTACGCCGAAGCGAGTCGGCAGCAAGCCGGCCCTCGTCTTTCTGGGCGAC
CGCTGGCAGAACGAAGAGGTCTACCAGAAGCTGCAGAACTTGCTCACCGA
CTTCCTGCGGGGGGACGTAGTTTCGTCTCTGAGCCTCTCGGGGCTGGACC
ACGCGCTCGTCTTCGCCCTGGCGGAGGACCGCGTGCTGATGCGCGGCTAC
AGTGTTGCCCTGCGGCGGGCGACGGCTGGCAGCGGCGCGGCGGCGGCGGC
GGGGGCGGCGGCGGGGACACCGGCGGCGGAGCTGACGCTGATGGGGCCGT
GCATGGATTGGCAAGTCCGGCGCACGAGCTTCGCGGCGAGGGACCTCTGG
CGGGCGGCCGCCAAGCAGCCCAAG
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