mRNA_P-wetherbeei_contig7327.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7327.3.1
Unique NamemRNA_P-wetherbeei_contig7327.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7327.3.1 vs. uniprot
Match: A0A6H5L783_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L783_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.500e-31
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:    1 LRAQATLRGEVRETAPSSWGRGLRSREAVWLSGSDALAWRLSERDLRDVKAHGARIKVHIYAAHPMSPRTETSEAIGWFMVDLRDLAAAPMTERLLRLQGAGTAEVKVSASLS 339
            LRAQA +  E RET  S+WGRG+RSR+A+WL G+D L+W L E+  + VKA+    KVH+YA  P SP  +TS+++GWF+VD+RDLA     ER ++LQGA  AEV +S+ L+
Sbjct:   52 LRAQANIANETRETGNSAWGRGVRSRQAMWLRGADKLSWSLPEQQFKQVKAYTPVCKVHVYATDPNSPTMDTSDSVGWFIVDMRDLAGQRQQERWVKLQGASPAEVLISSRLA 164
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BLAST of mRNA_P-wetherbeei_contig7327.3.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.890e-30
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:    1 LRAQATLRGEVRETAPSSWGRGLRSREAVWLSGSDALAWRLSERDLRDVKAHGARIKVHIYAAHPMSPRTETSEAIGWFMVDLRDLAAAPMTERLLRLQGAGTAEVKVSASLS 339
            LRAQA +  E RET  S+WGRG+RSR+A WL G+D L+W L E+  + VKA+    KVH+Y   P SP  +TS+++GWF+VD+RDLA     ER ++LQGA  AEV +S+SL+
Sbjct:   91 LRAQANIANETRETGNSAWGRGVRSRQATWLRGADKLSWSLPEQQFKQVKAYTPVCKVHVYVTDPNSPTMDTSDSVGWFIVDMRDLAGQRQQERWVKLQGASPAEVLISSSLA 203
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BLAST of mRNA_P-wetherbeei_contig7327.3.1 vs. uniprot
Match: A0A6H5JVP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.990e-28
Identity = 81/207 (39.13%), Postives = 108/207 (52.17%), Query Frame = 1 
Query:    1 LRAQATLRGEVRETAPSSWGRGLRSREAVWLSGSDALAWRLSERDLRDVKAHGARIKVHIYAAHPMSPRTETSEAIGWFMVDLRDLAAAPMTERLLRLQGAGTAEVKVSASLSPAEPXXXXP------------SG--GVTSALPSA---------PDAADLDALPI-----GPGASLPDSSTFLLTVALKGASDLVAL--APQLDG 531
            LRAQ+ +  E RET  S+WGRG RSR+A+WL G+D ++W L E+  ++V A+    KVH+YA  P SP  +TS+++GW +VD+RDLA     E  ++LQGA  AEV +S+ L+ A      P            SG  G  SA PSA         P AA    +P       P A L D      + A+   SDL AL   P  DG
Sbjct:  106 LRAQSNIANETRETGNSTWGRGGRSRQAMWLRGADKVSWSLPEQQFKEVNAYTPVCKVHVYAIDPNSPTMDTSDSVGWLIVDMRDLAGQRQQEHWVKLQGASPAEVLISSRLAMARDPQEDPCREGHEQRGRPNSGHRGNDSAKPSASKASFDGGSPTAASERTMPFPVAAAAPAAGLEDGEPLAASTAVDAVSDLDALPVGPGADG 312
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BLAST of mRNA_P-wetherbeei_contig7327.3.1 vs. uniprot
Match: A0A6H5JX35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX35_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 7.740e-27
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    4 RAQATLRGEVRETAPSSWGRGLRSREAVWLSGSDALAWRLSERDLRDVKAHGARIKVHIYAAHPMSPRTETSEAIGWFMVDLRDLAAAPMTERLLRLQGAGTAEVKVSASLS 339
            RAQA +  E RET  S+WGRG RSR+A+WL G+D ++W L E+  + V A+    KVH++A +P SP  +TS+++GWF+VD+RDL      ER ++LQGA  AEV +S+ L+
Sbjct:  108 RAQANIANETRETGNSTWGRGGRSRQAMWLRGADKVSWSLPEQQFKQVNAYTPVCKVHVHATNPDSPTMDTSDSVGWFIVDMRDLTGQRQQERWVKLQGASPAEVLISSRLA 219
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BLAST of mRNA_P-wetherbeei_contig7327.3.1 vs. uniprot
Match: A0A835Z851_9STRA (DUF3668 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z851_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.630e-17
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   37 ETAPSSWGRGLRSREAVWLSGSDALAWRLSERDLRDVKAHGARIKVHIYAAHPMSPRTETSEAIGWFMVDLRDLAAAPMTERLLRLQGAGTAEVKVSASL 336
            ET  SSWGRG +SR+A+W      LA+R++E  LRD KA+  ++KV + A    +P     + +GWF +DLRDLA+  M ++ ++LQG   AEV+VS  L
Sbjct:   16 ETGCSSWGRGTQSRDALWGKAGGTLAFRVTEAALRDAKAYNPKLKVQLIAVDASAPALTDGDFVGWFALDLRDLASGRMEQQWVKLQGCLPAEVQVSGCL 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7327.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L783_9PHAE1.500e-3152.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH9_ECTSI6.890e-3052.21Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP1_9PHAE4.990e-2839.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX35_9PHAE7.740e-2748.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z851_9STRA4.630e-1744.00DUF3668 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7327contigP-wetherbeei_contig7327:2179..2829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXH9
Preferred nameCEP120
PFAMsC2,DUF3668
Model size594
Max annot lvl2759|Eukaryota
KEGG koko:K16459
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117
Exons2
Evalue2.94e-39
EggNOG OGs2CMAG@1|root,2QPT0@2759|Eukaryota
Descriptioninterkinetic nuclear migration
Cds size594
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186972.6002994-CDS-P-wetherbeei_contig7327:2178..25171683186972.6002994-CDS-P-wetherbeei_contig7327:2178..2517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7327 2179..2517 +
1683186972.6097424-CDS-P-wetherbeei_contig7327:2574..28291683186972.6097424-CDS-P-wetherbeei_contig7327:2574..2829Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7327 2575..2829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7327.3.1prot_P-wetherbeei_contig7327.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7327 2179..2829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7327.3.1

>prot_P-wetherbeei_contig7327.3.1 ID=prot_P-wetherbeei_contig7327.3.1|Name=mRNA_P-wetherbeei_contig7327.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=198bp
LRAQATLRGEVRETAPSSWGRGLRSREAVWLSGSDALAWRLSERDLRDVK
AHGARIKVHIYAAHPMSPRTETSEAIGWFMVDLRDLAAAPMTERLLRLQG
AGTAEVKVSASLSPAEPPPPSPSGGVTSALPSAPDAADLDALPIGPGASL
PDSSTFLLTVALKGASDLVALAPQLDGACDRFWLSYAAFGMVVQTGQF
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mRNA from alignment at P-wetherbeei_contig7327:2179..2829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7327.3.1 ID=mRNA_P-wetherbeei_contig7327.3.1|Name=mRNA_P-wetherbeei_contig7327.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig7327:2179..2829+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCGAGCTCAGGCGACGCTGCGAGGCGAAGTCCGGGAGACGGCACCATC
CTCTTGGGGACGAGGCCTCCGTTCCCGCGAGGCAGTCTGGCTGAGCGGTT
CTGATGCGCTCGCCTGGAGGCTCTCGGAACGCGACCTTCGCGACGTCAAG
GCGCACGGAGCGCGGATAAAGGTCCACATCTACGCAGCGCACCCAATGTC
TCCACGCACGGAGACCAGCGAAGCCATCGGCTGGTTCATGGTGGATCTGC
GGGATTTGGCGGCGGCGCCAATGACGGAGCGCTTGCTGCGCCTCCAGGGC
GCCGGTACGGCAGAGGTAAAGGTTTCTGCCAGCCTTTCGGTTGTGGCGGA
GACGGAGAGACGAGACGGCGGCGCTGCCAGCAGCGACGTTTTCCAGCCAG
CCGAGCCGCCACCACCATCTCCGTCGGGGGGCGTCACAAGTGCGCTACCA
AGTGCACCGGACGCTGCCGACCTCGATGCGCTCCCGATCGGCCCCGGCGC
CTCCTTGCCCGATTCTTCCACATTTCTCTTGACCGTGGCGCTCAAGGGCG
CCTCGGACTTGGTGGCTCTCGCGCCGCAGCTGGACGGCGCCTGCGATCGC
TTCTGGCTCAGCTACGCGGCGTTCGGCATGGTGGTGCAGACCGGACAGTT
T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7327:2179..2829+

>mRNA_P-wetherbeei_contig7327.3.1 ID=mRNA_P-wetherbeei_contig7327.3.1|Name=mRNA_P-wetherbeei_contig7327.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig7327:2179..2829+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCGAGCTCAGGCGACGCTGCGAGGCGAAGTCCGGGAGACGGCACCATC
CTCTTGGGGACGAGGCCTCCGTTCCCGCGAGGCAGTCTGGCTGAGCGGTT
CTGATGCGCTCGCCTGGAGGCTCTCGGAACGCGACCTTCGCGACGTCAAG
GCGCACGGAGCGCGGATAAAGGTCCACATCTACGCAGCGCACCCAATGTC
TCCACGCACGGAGACCAGCGAAGCCATCGGCTGGTTCATGGTGGATCTGC
GGGATTTGGCGGCGGCGCCAATGACGGAGCGCTTGCTGCGCCTCCAGGGC
GCCGGTACGGCAGAGGTAAAGGTTTCTGCCAGCCTTTCGCCAGCCGAGCC
GCCACCACCATCTCCGTCGGGGGGCGTCACAAGTGCGCTACCAAGTGCAC
CGGACGCTGCCGACCTCGATGCGCTCCCGATCGGCCCCGGCGCCTCCTTG
CCCGATTCTTCCACATTTCTCTTGACCGTGGCGCTCAAGGGCGCCTCGGA
CTTGGTGGCTCTCGCGCCGCAGCTGGACGGCGCCTGCGATCGCTTCTGGC
TCAGCTACGCGGCGTTCGGCATGGTGGTGCAGACCGGACAGTTT
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