mRNA_P-wetherbeei_contig7303.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7303.1.1
Unique NamemRNA_P-wetherbeei_contig7303.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: D8LLC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.920e-53
Identity = 151/403 (37.47%), Postives = 201/403 (49.88%), Query Frame = 1 
Query:    1 MGKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLL-----SSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLEDVEE---------LDDDFVLQAXXXXXXXXXXXXXGGAEAFDFDAHVARLIAASEQRVGIGGRGGRKVVVGRGGKAVGXXXXXXXXXXXXEGSDLD---------EFDMGLLVG-ELENIARAGSGGGGEXXXXXXXXXANADGGDVEAAFELALKNYDSDDWGGLESDDEQLRGPRDPETDKLANQCFDEFLEEHKNFSWLDGVAAPAPKPR 1137
            MG+ ++FIDKK + T+++VHRSQQD A E     SEFVL+PS    D+  Q  RK           AA   +         + G    + DHI ALGLPNDGYDY++H+K+MG GTFVS+ G++      +S+GA G              +P EALPS E LDRQLE++TISE VMD D+R A+   L DV E         LDDDFV+QA             G    FDFDAHVARL+ AS +  G+  R     +  +G   +             + + LD         E D  LL G ++   A AG G  GE            D   +++ FE  L  YDSD+WG LE DD++++G  D E    AN C D+FL  +++  W +GV    P  R
Sbjct:    1 MGRKKKFIDKKESTTFHVVHRSQQDKANEGEEEASEFVLIPSGPPRDSRPQDERK-----------AAGKGKG--------KGGVAGAERDHINALGLPNDGYDYDQHLKSMGGGTFVSKTGKVQHFAEGNSQGARGGGAKP--------AIPEEALPSGETLDRQLEAVTISEKVMDGDMRRALAAGLADVGEEDWDDESNMLDDDFVVQAAGA----------GEDGGFDFDAHVARLMEASAKETGLRQRSRDDDLQTKGLVRLRRDSDSESDDSEDDVATLDGGAGSDDSGEIDDALLEGLDISGAAAAGGGVPGEG--------TEEDRAVLDSQFEATLAAYDSDEWGELEEDDDRVQGRWDLEQHDYANTCMDDFLAANEDARWTEGVQRLPPDQR 358
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: A0A7S3H5T5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5T5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.070e-29
Identity = 87/249 (34.94%), Postives = 123/249 (49.40%), Query Frame = 1 
Query:    1 MGKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAV---LPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLED---VEELDDDFVLQAXXXXXXXXXXXXXGGAEAFDFDAHVARLIAASEQRVGIGGRGGRK 729
            MGK  +FIDK N+  ++++HRSQ+D A+    VPS FVLVP+  + +          R +  +A                    +L+   DHI  LG  NDGYDY +H++ +G G      G  +S  G AG                 LP + +PSE+ LDR  E+ITI+  +MD DIR A+F   ++    EEL DDF+ Q                 + FDFDAH+A+LIA SEQ +G+G   G+K
Sbjct:    1 MGKKEKFIDKANSQKFHVLHRSQRDEAHANYEVPSNFVLVPAVDNGNXXXXXXXXXXRYTVTKAV-------------------KLTATKDHINELGFANDGYDYSQHLRDLGSG------GHFISKTGRAGTDLDLAVLTRAQGTTIELPEDCMPSEKNLDRHYEAITINHKLMDKDIRAALFDGFDEDGEFEELQDDFITQVMSEPAD----------DDFDFDAHIAKLIARSEQTLGLGPVPGKK 214
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: A0A7S0XBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBG0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.920e-29
Identity = 92/238 (38.66%), Postives = 125/238 (52.52%), Query Frame = 1 
Query:    1 MGKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAI-FGDLED--VEELDDDFVLQAXXXXXXXXXXXXXGGAEAFDFDAHVARLIAASEQRVG 705
            MGK + FI K    TY++VHRSQ D+AY     PS++VL+P++ S + +R+  + ++  S Y        +    ++ +F R      KGDHI  LG  NDGYDY +H+K +  G F+   G LL                     +P + LPS E+ DR LE+I IS+  MDDDIR A+ F   ED   EELDDDFV+Q                   FDFDAH+ARLIA SE+ +G
Sbjct:    1 MGK-KPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKFKDNQ--SVY--------SNNSIDFKQFTR------KGDHINHLGFKNDGYDYSKHIKVVDGGKFIGLNGELLER------------PVVKEIEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNALDFDGDEDGEFEELDDDFVIQVMAEPEVPD----------FDFDAHIARLIANSEKDLG 199
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: A0A7S0XBI8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBI8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.990e-29
Identity = 92/238 (38.66%), Postives = 125/238 (52.52%), Query Frame = 1 
Query:    1 MGKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAI-FGDLED--VEELDDDFVLQAXXXXXXXXXXXXXGGAEAFDFDAHVARLIAASEQRVG 705
            MGK + FI K    TY++VHRSQ D+AY     PS++VL+P++ S + +R+  + ++  S Y        +    ++ +F R      KGDHI  LG  NDGYDY +H+K +  G F+   G LL                     +P + LPS E+ DR LE+I IS+  MDDDIR A+ F   ED   EELDDDFV+Q                   FDFDAH+ARLIA SE+ +G
Sbjct:    1 MGK-KPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKFKDNQ--SVY--------SNNSIDFKQFTR------KGDHINHLGFKNDGYDYSKHIKVVDGGKFIGLNGELLER------------PVVKEIEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNALDFDGDEDGEFEELDDDFVIQVMAEPEVPD----------FDFDAHIARLIANSEKDLG 199
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: A0A8J2S7W7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7W7_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.340e-27
Identity = 88/232 (37.93%), Postives = 116/232 (50.00%), Query Frame = 1 
Query:    4 GKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGD--LEDVEELDDDFVLQAXXXXXXXXXXXXXGGAEAFDFDAHVARLIAASE 693
            G+ ++FIDKK A TYN+VHRSQQD A+     PSE VL+ ++A  +A R+                                         +T  G  +DGYDYERH++A G G FV   G +                   AA LP EALP E++L+R +E++T+ + +MD D+R A+F D   ED EEL DDFV+ A               AE FDFDAHVARLIAA+E
Sbjct:    4 GRKKKFIDKKAATTYNVVHRSQQDGAFGLEDRPSERVLL-AQAPVNAARRA---------------------------------------RVTRAGFADDGYDYERHLRAGGGGVFVGADGSVSK-----------------AAALPPEALPGEQELERAVEAVTLDDRLMDADVRDALFDDAAFEDCEELLDDFVMDASRPAADEP-------AE-FDFDAHVARLIAAAE 170
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: W4FC43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FC43_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.500e-25
Identity = 88/230 (38.26%), Postives = 123/230 (53.48%), Query Frame = 1 
Query:    7 KTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLEDVEELDDDFVLQAXXXXXXXXXXXXX-GGAEAFDFDAHVARLIAASE 693
            K++ FI+KK A  +++VHRSQ+D         S+FVL+ S+ + D D      D      ++A A   A       K +R G + V  D +  LG+ NDGYDY +HMK MG+G F S          A G             VLP + L S  + DR L++IT++EDVMD+D+R A+  D E  EEL DDF+LQA              GGA+ FD+DAH+A+L+AA+E
Sbjct:   33 KSKAFINKKEAQHFHVVHRSQRDPLINDPSA-SKFVLLSSKPAVD-DYDSDDSDLPDLVPQSATAPPAA-------KAVRFGNV-VAHDLVNELGMVNDGYDYSKHMKEMGQGHFYS----------AGGTYDEGAGLLNKRVVLPDDVLASANEHDRMLDAITLTEDVMDEDLREALVND-EAFEELTDDFMLQAAEDLPVEQGDGAAAGGADGFDYDAHIAKLMAAAE 241
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: W4FCN5_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCN5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.870e-25
Identity = 88/230 (38.26%), Postives = 123/230 (53.48%), Query Frame = 1 
Query:    7 KTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLEDVEELDDDFVLQAXXXXXXXXXXXXX-GGAEAFDFDAHVARLIAASE 693
            K++ FI+KK A  +++VHRSQ+D         S+FVL+ S+ + D D      D      ++A A   A       K +R G + V  D +  LG+ NDGYDY +HMK MG+G F S          A G             VLP + L S  + DR L++IT++EDVMD+D+R A+  D E  EEL DDF+LQA              GGA+ FD+DAH+A+L+AA+E
Sbjct:   33 KSKAFINKKEAQHFHVVHRSQRDPLINDPSA-SKFVLLSSKPAVD-DYDSDDSDLPDLVPQSATAPPAA-------KAVRFGNV-VAHDLVNELGMVNDGYDYSKHMKEMGQGHFYS----------AGGTYDEGAGLLNKRVVLPDDVLASANEHDRMLDAITLTEDVMDEDLREALVND-EAFEELTDDFMLQAAEDLPVEQGDGAAAGGADGFDYDAHIAKLMAAAE 241
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: A0A397D6B4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D6B4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.050e-23
Identity = 89/230 (38.70%), Postives = 124/230 (53.91%), Query Frame = 1 
Query:    7 KTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLEDVEELDDDFVLQAXXXXXXXXXXXXX-GGAEAFDFDAHVARLIAASE 693
            K++ FI+KK A  +++VHRSQ+D         S+FVL+ S+ +AD D      D      ++A A   A       K +R G + V  D +  LG+ NDGYDY +HMK MG+  F    G LL+ R                 VLP   L S  + DR L++IT++EDVMD+D+R A+  D E  EEL DDF+LQA              GGA+ FD+DAH+A+L+AA+E
Sbjct:    5 KSKAFINKKEAQHFHVVHRSQRDPLINDPSA-SKFVLLSSKPAAD-DYDSDDSDLPDLVPQSATAPPAA-------KAVRFGNV-VAHDLVNELGMVNDGYDYSKHMKEMGK--FPCHAG-LLNKR----------------VVLPDNVLASANEHDRMLDAITLTEDVMDEDLREALVND-EAFEELTDDFMLQAAEDLPVEQGDGAAAGGADGFDYDAHIAKLMAAAE 204
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: A0A485K4R1_9STRA (Aste57867_1270 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4R1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.770e-23
Identity = 87/239 (36.40%), Postives = 120/239 (50.21%), Query Frame = 1 
Query:    1 MGKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSR--------ASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSEALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLEDVEELDDDFVLQAXXXXXXXXXXXXXGGAEAFDFDAHVARLIAASE 693
            MGK + FI+KK A  +++VHRSQ+D         S+FVL+ S         A  D D      D     + +A  A+  E        +R G + V  D +   G+ NDGYDY +HMK +G G F S          A G             VLP E L S  + +R LE+ITI+EDVMD+D+R A+  D +  EEL+DDF+ QA             G A+ FD+DAH+A+L+AA+E
Sbjct:   75 MGKKKAFINKKEAQHFHVVHRSQRDPLINDPNA-SKFVLLSSSKPVEFQGAAGGDDDEYDSDDDLPELVHSSAPPAAKGE--------VRFGNV-VARDMVNEFGMVNDGYDYSKHMKEIGRGQFYS----------AGGTYDEGASLLTKRVVLPDEVLASTNEHERMLEAITITEDVMDEDLREALVND-DAFEELNDDFMAQAAEELPDDDH----GAADGFDYDAHIAKLMAAAE 288
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BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Match: W7TKL0_9STRA (Low temperature viability protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKL0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.520e-22
Identity = 90/255 (35.29%), Postives = 125/255 (49.02%), Query Frame = 1 
Query:    1 MGKTR-RFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADRQHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPNDGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGXXXXXXXXXXMAAVLPSE---ALPSEEQLDRQLESITISEDVMDDDIRGAIFG-DLEDVEE----------LDDDFVLQAXXXXXXXXXXXXX-----GGAEAFDFDAHVARLIAASEQRVG 705
            MGK R RFID  N+  + +VHRSQ+DA  +     S++VL+P R    ADR    +                  QRE  K +R        DHI  LGLPNDGY+Y RH+K MG G F++  G ++ +R   G              +  +   A   EE+L   +++IT+S D MD+++  A+FG D ED EE          L+DDF+LQA                  GG + FDF+AH+A LIA SE+ +G
Sbjct:    1 MGKARKRFIDPANSQHFYVVHRSQRDANGDDPKA-SQYVLLPGRRGNAADRGEATEPS----------------QRE--KDIRWR------DHINELGLPNDGYNYGRHLKTMGGGRFIAASGEIVQARTRGGVYQLAQGSGLQDERIAGDEGVAPCREERLKPVVDAITLSADCMDEELERALFGSDTEDGEEKVEGVRGCGELNDDFILQAGKEPKEDLDEEDGEVDGNGGGDKFDFEAHMAMLIAKSEKSLG 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC8_ECTSI1.920e-5337.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3H5T5_9STRA1.070e-2934.94Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0XBG0_9STRA1.920e-2938.66Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S0XBI8_9STRA7.990e-2938.66Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2S7W7_9STRA6.340e-2737.93Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
W4FC43_9STRA1.500e-2538.26Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FCN5_9STRA1.870e-2538.26Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A397D6B4_9STRA1.050e-2338.70Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485K4R1_9STRA1.770e-2336.40Aste57867_1270 protein n=1 Tax=Aphanomyces stellat... [more]
W7TKL0_9STRA6.520e-2235.29Low temperature viability protein n=2 Tax=Monodops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7303contigP-wetherbeei_contig7303:11..1663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLC8
Preferred nameLTV1
PFAMsLTV
Model size1182
Max annot lvl2759|Eukaryota
KEGG koko:K14798,ko:K14811
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009987,GO:0010008,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022613,GO:0022626,GO:0022627,GO:0030684,GO:0030688,GO:0031090,GO:0031410,GO:0031503,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032535,GO:0032991,GO:0033036,GO:0033750,GO:0034448,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042023,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044786,GO:0045184,GO:0045793,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901360,GO:1901576,GO:1990904
Exons2
Evalue3.15e-54
EggNOG OGsKOG2637@1|root,KOG2637@2759|Eukaryota
Ec32 ortholog descriptionLow temperature viability protein
Ec32 orthologEc-27_002150.1
EC3.6.4.13
Descriptionribosomal small subunit export from nucleus
Cds size1182
COG categoryS
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.5068343-CDS-P-wetherbeei_contig7303:10..6841683186971.5068343-CDS-P-wetherbeei_contig7303:10..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7303 11..684 -
1683186971.516879-CDS-P-wetherbeei_contig7303:1155..16631683186971.516879-CDS-P-wetherbeei_contig7303:1155..1663Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7303 1156..1663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7303.1.1prot_P-wetherbeei_contig7303.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7303 11..1663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7303.1.1

>prot_P-wetherbeei_contig7303.1.1 ID=prot_P-wetherbeei_contig7303.1.1|Name=mRNA_P-wetherbeei_contig7303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=394bp
MGKTRRFIDKKNAVTYNLVHRSQQDAAYETTGVPSEFVLVPSRASADADR
QHVRKDKRMSAYEAAAAASLAEEQREYAKFLRTGELSVKGDHITALGLPN
DGYDYERHMKAMGEGTFVSRQGRLLSSRGAAGGAGGGDGGGGMAAVLPSE
ALPSEEQLDRQLESITISEDVMDDDIRGAIFGDLEDVEELDDDFVLQAAA
AGEEGGDDGGNGGAEAFDFDAHVARLIAASEQRVGIGGRGGRKVVVGRGG
KAVGGGGGGGMGDDDEEGSDLDEFDMGLLVGELENIARAGSGGGGEGDSG
GGDGGANADGGDVEAAFELALKNYDSDDWGGLESDDEQLRGPRDPETDKL
ANQCFDEFLEEHKNFSWLDGVAAPAPKPRGNASGGGGAAVSGGG
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mRNA from alignment at P-wetherbeei_contig7303:11..1663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7303.1.1 ID=mRNA_P-wetherbeei_contig7303.1.1|Name=mRNA_P-wetherbeei_contig7303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1653bp|location=Sequence derived from alignment at P-wetherbeei_contig7303:11..1663- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAAGACCAGGCGCTTTATCGACAAAAAGAATGCGGTCACCTATAA
CTTGGTCCACCGTTCCCAGCAGGACGCTGCCTACGAGACGACTGGCGTTC
CTTCCGAGTTCGTCCTGGTGCCTTCGCGAGCGTCGGCCGACGCCGACAGG
CAGCATGTTCGGAAGGACAAGCGTATGTCGGCTTACGAAGCGGCGGCGGC
TGCCTCGCTGGCCGAAGAACAGCGGGAGTATGCCAAGTTTCTTCGCACGG
GCGAGCTCTCAGTGAAGGGCGACCACATTACGGCGCTCGGGCTACCCAAC
GACGGATACGACTACGAACGCCACATGAAGGCCATGGGTGAAGGGACATT
TGTGAGCCGGCAGGGGCGGCTCCTCAGTAGCCGTGGCGCTGCTGGTGGTG
CTGGTGGCGGCGACGGCGGCGGCGGCATGGCGGCGGTGCTTCCGTCCGAG
GCGCTACCATCGGAAGAGCAGTTGGATCGGCAGCTGGAGTCCATCACCAT
CAGCGAGGGTGAGTTTATGGTAATTGGTCCTTTCCATAGACTTTGTTAAG
ACATCGTGTCACCCGGCTTCGTATCGTTTACGTGTATGTACCATTTTACT
GTTCCGCGAGACGCTTGAAGTGCCGTATTTGCCCGCCAGAGTGTAGATGT
TGCGTCTAGTCATGGTGTTTGGAGGCGCATTGAAGAAGGGAATGACGTGC
CTTCGATTCATACACACCGGGTACAGGACACCCTTTCTCGCAGCAAACGT
TTCATGTCAAGAAAGAGTCGGCAGCAAGTTCATTTTTTCCCCACAATAGT
GCTACCTCCCGGTTCAGTAAATCCATTTCTTGGGTGTGGGAAAAGGTAAG
CTACGAACGATGACGACACGAAGGGAAGCAGCGCATACGAAAGGGAAGCA
GCGCATCTGTTTAGTATCATTCCTAATTTTTTCGCTCTGTGATGCCGTGT
GTATTCACGCTCTCCCGTTACCGTCGCAGATGTGATGGACGATGACATCC
GTGGTGCCATCTTCGGCGACTTGGAAGACGTCGAAGAGCTCGATGACGAC
TTCGTGCTGCAGGCGGCCGCTGCCGGCGAGGAAGGCGGCGACGACGGCGG
CAACGGCGGCGCGGAAGCCTTTGACTTTGATGCCCATGTGGCACGCCTCA
TCGCCGCATCGGAGCAGAGGGTGGGTATCGGCGGCCGTGGCGGCCGCAAG
GTCGTGGTTGGACGCGGTGGCAAGGCGGTCGGCGGCGGCGGTGGCGGCGG
CATGGGCGATGATGACGAAGAAGGCAGCGATTTAGATGAGTTTGACATGG
GGCTGCTCGTGGGCGAGCTGGAAAACATTGCCCGCGCCGGCAGTGGTGGC
GGCGGCGAGGGCGACAGCGGCGGTGGCGACGGAGGGGCGAATGCCGACGG
CGGCGACGTGGAAGCGGCCTTCGAGCTGGCTCTGAAGAACTACGACAGCG
ACGACTGGGGTGGCCTGGAGTCGGACGACGAGCAGCTGCGGGGTCCGCGG
GATCCCGAAACCGACAAACTGGCTAATCAGTGCTTCGACGAGTTTCTCGA
GGAGCACAAGAACTTCTCGTGGCTCGACGGCGTCGCCGCGCCGGCCCCAA
AGCCGCGTGGCAACGCCAGCGGCGGCGGCGGCGCCGCCGTTAGCGGCGGC
GGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7303:11..1663-

>mRNA_P-wetherbeei_contig7303.1.1 ID=mRNA_P-wetherbeei_contig7303.1.1|Name=mRNA_P-wetherbeei_contig7303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1182bp|location=Sequence derived from alignment at P-wetherbeei_contig7303:11..1663- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAAGACCAGGCGCTTTATCGACAAAAAGAATGCGGTCACCTATAA
CTTGGTCCACCGTTCCCAGCAGGACGCTGCCTACGAGACGACTGGCGTTC
CTTCCGAGTTCGTCCTGGTGCCTTCGCGAGCGTCGGCCGACGCCGACAGG
CAGCATGTTCGGAAGGACAAGCGTATGTCGGCTTACGAAGCGGCGGCGGC
TGCCTCGCTGGCCGAAGAACAGCGGGAGTATGCCAAGTTTCTTCGCACGG
GCGAGCTCTCAGTGAAGGGCGACCACATTACGGCGCTCGGGCTACCCAAC
GACGGATACGACTACGAACGCCACATGAAGGCCATGGGTGAAGGGACATT
TGTGAGCCGGCAGGGGCGGCTCCTCAGTAGCCGTGGCGCTGCTGGTGGTG
CTGGTGGCGGCGACGGCGGCGGCGGCATGGCGGCGGTGCTTCCGTCCGAG
GCGCTACCATCGGAAGAGCAGTTGGATCGGCAGCTGGAGTCCATCACCAT
CAGCGAGGATGTGATGGACGATGACATCCGTGGTGCCATCTTCGGCGACT
TGGAAGACGTCGAAGAGCTCGATGACGACTTCGTGCTGCAGGCGGCCGCT
GCCGGCGAGGAAGGCGGCGACGACGGCGGCAACGGCGGCGCGGAAGCCTT
TGACTTTGATGCCCATGTGGCACGCCTCATCGCCGCATCGGAGCAGAGGG
TGGGTATCGGCGGCCGTGGCGGCCGCAAGGTCGTGGTTGGACGCGGTGGC
AAGGCGGTCGGCGGCGGCGGTGGCGGCGGCATGGGCGATGATGACGAAGA
AGGCAGCGATTTAGATGAGTTTGACATGGGGCTGCTCGTGGGCGAGCTGG
AAAACATTGCCCGCGCCGGCAGTGGTGGCGGCGGCGAGGGCGACAGCGGC
GGTGGCGACGGAGGGGCGAATGCCGACGGCGGCGACGTGGAAGCGGCCTT
CGAGCTGGCTCTGAAGAACTACGACAGCGACGACTGGGGTGGCCTGGAGT
CGGACGACGAGCAGCTGCGGGGTCCGCGGGATCCCGAAACCGACAAACTG
GCTAATCAGTGCTTCGACGAGTTTCTCGAGGAGCACAAGAACTTCTCGTG
GCTCGACGGCGTCGCCGCGCCGGCCCCAAAGCCGCGTGGCAACGCCAGCG
GCGGCGGCGGCGCCGCCGTTAGCGGCGGCGGC
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