mRNA_P-wetherbeei_contig7247.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7247.1.1
Unique NamemRNA_P-wetherbeei_contig7247.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: A0A7R9U6R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6R0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.110e-21
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 DFDSFNATKIVRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNN 348
            D   F+A  IV P L+VV+S + +GP T AAL ++ +LL+   +   +  A +A +E++  V   RFE+T    DE V   +M+VL   + GP G+++GD+AVW+AL TCFV  N
Sbjct:   54 DLSGFSALDIVAPLLVVVRSPQASGPFTLAALRAIKSLLQRGALASHLVHAPDAANEVIEAVAACRFEQTDAQLDEVVLAELMDVLVCCIRGPLGQYVGDEAVWDALQTCFVNRN 168          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: D3BJV8_POLPP (Arf guanyl-nucleotide exchange factor n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BJV8_POLPP)

HSP 1 Score: 87.8 bits (216), Expect = 8.780e-18
Identity = 45/120 (37.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 ADFDSFNATKIVRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNEVRA 360
            ++F+S + +  + PFLLV++S ET+GP+T  AL+S+   L L  I      A +A+  +   VTH +FE T    DE V M+I++VL++ +   AG +L +D V+E+++TCF+M ++ R+
Sbjct:   55 SNFESLDTSTYLDPFLLVIRSAETSGPITGTALTSVNKFLNL-FIDSESNNAPKAIRSIAESVTHCKFEATDSKSDEVVLMKILQVLSSCMKNAAGIYLTNDLVYESMNTCFLMTDQSRS 173          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: L1JUX4_GUITC (SEC7 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JUX4_GUITC)

HSP 1 Score: 87.8 bits (216), Expect = 9.090e-18
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   34 VRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNEVR 357
            +RPFL V++S ET+GP+T  ALSSL   L    I  G P A E++  +   VT  RFE T    DE V +RI++VL   L  PAG  L D  VW+ + +CF +  + R
Sbjct:  163 LRPFLDVIESAETSGPITGGALSSLSKFLNYGFIHKGSPRAAESVCRICRIVTRCRFERTDHSGDEVVLVRILQVLLDCLRSPAGTLLSDQNVWDMVQSCFDIGKQQR 270          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: L8H1W4_ACACA (Brefeldin A resistance factor, putative (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1W4_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 1.140e-17
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    4 DFDSFNATKIVRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNEVR 357
            D  +      ++PFL V++S ET+GP+T  ALSS+   L    I  G P A +AMS +   VTH RFE T+   DE V   I++VL   L  PAG  L DD V E + TCF M+ + R
Sbjct:   74 DLAALEPLAYLKPFLGVIRSEETSGPITGVALSSVNKFLSYGFIHEGTPSAAKAMSTITDIVTHCRFEATAPDSDEVVLATILDVLLMCLKCPAGFLLSDDMVMEMIQTCFRMSVQTR 191          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: A0A7S0DXJ1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DXJ1_9CRYP)

HSP 1 Score: 86.7 bits (213), Expect = 1.520e-17
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   34 VRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNEVR 357
            +RPFL V++S ET+GP+T  ALSSL   L    I  G P A E++  +   VT  RFE T    DE V +RI++VL   L  PAG  L D  VW+ + +C+ +  + R
Sbjct:  163 LRPFLDVIESAETSGPITGGALSSLSKFLNYGFIHKGSPRAAESVCRICRIVTRCRFERTDHSGDEVVLVRILQVLLDCLRSPAGTLLSDQNVWDMVQSCYDIGKQQR 270          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: A0A6H5GQR0_9HEMI (SEC7 domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQR0_9HEMI)

HSP 1 Score: 84.7 bits (208), Expect = 1.070e-16
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    4 DFDSFNATKIVRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNE 351
            D      T+ + PFL V++S ET+GP+T  ALSS+   L  N+I P        +  +   VTHA+F  T    D  V M+I++VL   +  P G WL D++V E L +CF M+ E
Sbjct:   57 DLRQLEPTRFLAPFLEVIRSEETSGPVTSLALSSVNKFLTYNLIDPNCKTISSTVQNISDAVTHAKFVGTDTTSDSLVLMKIIQVLRTLILSPVGAWLTDESVCEILFSCFKMSTE 172          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: A0A7S3C7Q9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C7Q9_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 1.480e-16
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   34 VRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIV-PGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNE 351
            + PFL +V+SVET+GP+T  ALSS+  LL  N++V     EA+E+M ++V  VTH RFE T    DE V   I++VL A ++ P+G+ L DD V   +  C+ + ++
Sbjct:   64 LEPFLDIVRSVETSGPITGTALSSIHVLLTENMLVGTDEKEAKESMHKIVNAVTHCRFEATDPASDEIVLSNILQVLLACISCPSGKLLSDDDVCNVIQACYRIGHQ 170          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: A0A5B8MF22_9CHLO (Sec7 domain-containing protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MF22_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 2.010e-16
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   34 VRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMP-EAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNE 351
            + PFL +V+SVET+GP+T  ALSS+  LL  N++V     EA+ AM ++V  VTH RFE T    DE V  +I++VL A +A P+G  L DD V   +  C+ + ++
Sbjct:   67 LEPFLDIVRSVETSGPITSTALSSIHVLLTENMLVDTEEGEAKAAMHKIVNAVTHCRFEATDPSSDEIVLSKILQVLLACIACPSGNLLSDDDVCNIIQACYRIGHQ 173          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: A0A7S1V433_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1V433_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-16
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   40 PFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNEVR 357
            PFLLVV+S +T+GP+T AAL SL    R + I      A  AM+++ + VTH +FE T    DE V M+I++VL A + GPAGR L D A+   + TCF M  + R
Sbjct:  157 PFLLVVRSEDTSGPVTGAALDSLRKFAR-SFIHDDSRSASAAMAQIASAVTHCKFEATDPDSDEVVLMKILQVLLACVEGPAGRLLSDTALVAMIMTCFRMTLQKR 261          
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Match: M7WLC2_RHOT1 (SEC8-like domain containing protein n=6 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WLC2_RHOT1)

HSP 1 Score: 83.6 bits (205), Expect = 2.770e-16
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 ADFDSFNATKIVRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMPEAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLGDDAVWEALHTCFVMNNEVR 357
            AD D  +A  +++PFL VV+S ET+GP+T  ALSS+   +  +V+ P  P    AM++L +  TH +FE +    DE V ++I++VL   L G  G+ L D++V E + T   M  ++R
Sbjct:  118 ADTDEVDAAALLQPFLEVVRSPETSGPITATALSSIDKFISFSVLTPSSPNLAIAMAQLSSAGTHCKFEASDSVSDEVVLLKILDVLRNCLTGRLGQVLSDESVCEMMETGLSMCCQMR 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7247.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9U6R0_9STRA6.110e-2140.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
D3BJV8_POLPP8.780e-1837.50Arf guanyl-nucleotide exchange factor n=1 Tax=Poly... [more]
L1JUX4_GUITC9.090e-1842.59SEC7 domain-containing protein n=1 Tax=Guillardia ... [more]
L8H1W4_ACACA1.140e-1742.37Brefeldin A resistance factor, putative (Fragment)... [more]
A0A7S0DXJ1_9CRYP1.520e-1741.67Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A6H5GQR0_9HEMI1.070e-1637.93SEC7 domain-containing protein n=1 Tax=Nesidiocori... [more]
A0A7S3C7Q9_9CHLO1.480e-1642.06Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A5B8MF22_9CHLO2.010e-1642.99Sec7 domain-containing protein n=3 Tax=Chloropicon... [more]
A0A7S1V433_9EUKA2.040e-1645.28Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]
M7WLC2_RHOT12.770e-1637.82SEC8-like domain containing protein n=6 Tax=Rhodos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7247contigP-wetherbeei_contig7247:344..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRA5
PFAMsSec7,Sec7_N
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K18442,ko:K18443
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000137,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006914,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0019898,GO:0019899,GO:0030029,GO:0030036,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0071840,GO:0097708,GO:0098772,GO:0098791
Exons2
Evalue5.98e-24
EggNOG OGsCOG5307@1|root,KOG0928@2759|Eukaryota
Descriptionregulation of ARF protein signal transduction
Cds size360
COG categoryL
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.8724244-CDS-P-wetherbeei_contig7247:343..5671683186967.8724244-CDS-P-wetherbeei_contig7247:343..567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7247 344..567 -
1683186967.8853526-CDS-P-wetherbeei_contig7247:932..10681683186967.8853526-CDS-P-wetherbeei_contig7247:932..1068Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7247 933..1068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7247.1.1prot_P-wetherbeei_contig7247.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7247 344..1068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7247.1.1

>prot_P-wetherbeei_contig7247.1.1 ID=prot_P-wetherbeei_contig7247.1.1|Name=mRNA_P-wetherbeei_contig7247.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
ADFDSFNATKIVRPFLLVVQSVETNGPLTDAALSSLLALLRLNVIVPGMP
EAREAMSELVAGVTHARFEETSRPHDEAVRMRIMEVLTAALAGPAGRWLG
DDAVWEALHTCFVMNNEVRA
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mRNA from alignment at P-wetherbeei_contig7247:344..1068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7247.1.1 ID=mRNA_P-wetherbeei_contig7247.1.1|Name=mRNA_P-wetherbeei_contig7247.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=725bp|location=Sequence derived from alignment at P-wetherbeei_contig7247:344..1068- (Phaeothamnion wetherbeei SAG_119_79)
GCAGATTTTGACAGCTTCAATGCAACCAAGATTGTTCGGCCGTTTCTGCT TGTCGTCCAATCGGTCGAAACTAACGGCCCGCTGACTGATGCCGCGCTCA GCTCTCTCCTGGCGCTGCTACGCCTCAATGTCATCGGTGAGCGAGATGGC TGCCTTGCCGCCACCAGACGAGCCTTGCAACGAGCCTTGCATTTATGTGG AGAGGCTGATTTTTAAGCCACCTTATGACACGGAGCGGAAGGTTTGTTGG GAACTTTCCCAAAGCTGTTTCGCCACAACGTTGTTCCTGCTGGTGCGCAA GCATCCGCATTTGTCTGCCCAACGCATTCTCCTTCTGGCATTGCGCTGGG GGAATTCCACCATCAGCGCCGTACTCGCGGATCGCCGTCCTTGCGACATT AACGCACCCCAAGTCCAAAATACACACTCAATCCAAAATACACCACCGTA GCTTTCCAAATCCTCCCAAACCTCCCAACCTTCCTCCTTCACCGCACGTA GTGCCCGGCATGCCCGAGGCGCGGGAGGCCATGTCGGAGCTCGTGGCGGG CGTCACCCATGCCCGCTTCGAGGAGACGAGCCGGCCACACGACGAGGCGG TGCGGATGCGCATCATGGAGGTGCTGACAGCGGCGCTGGCGGGTCCCGCG GGGCGCTGGCTGGGGGACGACGCCGTGTGGGAAGCGCTCCACACGTGCTT CGTGATGAACAACGAGGTGAGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7247:344..1068-

>mRNA_P-wetherbeei_contig7247.1.1 ID=mRNA_P-wetherbeei_contig7247.1.1|Name=mRNA_P-wetherbeei_contig7247.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig7247:344..1068- (Phaeothamnion wetherbeei SAG_119_79)
GCAGATTTTGACAGCTTCAATGCAACCAAGATTGTTCGGCCGTTTCTGCT
TGTCGTCCAATCGGTCGAAACTAACGGCCCGCTGACTGATGCCGCGCTCA
GCTCTCTCCTGGCGCTGCTACGCCTCAATGTCATCGTGCCCGGCATGCCC
GAGGCGCGGGAGGCCATGTCGGAGCTCGTGGCGGGCGTCACCCATGCCCG
CTTCGAGGAGACGAGCCGGCCACACGACGAGGCGGTGCGGATGCGCATCA
TGGAGGTGCTGACAGCGGCGCTGGCGGGTCCCGCGGGGCGCTGGCTGGGG
GACGACGCCGTGTGGGAAGCGCTCCACACGTGCTTCGTGATGAACAACGA
GGTGAGGGCG
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