mRNA_P-wetherbeei_contig7224.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7224.2.1
Unique NamemRNA_P-wetherbeei_contig7224.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7224.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7224contigP-wetherbeei_contig7224:1564..2517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186966.7847826-UTR-P-wetherbeei_contig7224:1563..15761683186966.7847826-UTR-P-wetherbeei_contig7224:1563..1576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7224 1564..1576 -
1683186966.817476-UTR-P-wetherbeei_contig7224:2284..25171683186966.817476-UTR-P-wetherbeei_contig7224:2284..2517Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7224 2285..2517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186966.7988155-CDS-P-wetherbeei_contig7224:1576..19161683186966.7988155-CDS-P-wetherbeei_contig7224:1576..1916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7224 1577..1916 -
1683186966.8081553-CDS-P-wetherbeei_contig7224:2174..22841683186966.8081553-CDS-P-wetherbeei_contig7224:2174..2284Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7224 2175..2284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7224.2.1prot_P-wetherbeei_contig7224.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7224 1577..2284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7224.2.1

>prot_P-wetherbeei_contig7224.2.1 ID=prot_P-wetherbeei_contig7224.2.1|Name=mRNA_P-wetherbeei_contig7224.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MQRHAESAKSAAKEEPAVDAKAGDTEWSRYTRQSGGGLVCIADEQEPRDL
LLGRRSFGGFSPVVETAYDKCLQELKLRAKAAAAAAAAGGDDNDAADATG
EEAELKKRFGGYINAGRKGGGGSSGGGGRGGGGGGGSSSGQKPSKRPRT*
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mRNA from alignment at P-wetherbeei_contig7224:1564..2517-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7224.2.1 ID=mRNA_P-wetherbeei_contig7224.2.1|Name=mRNA_P-wetherbeei_contig7224.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig7224:1564..2517- (Phaeothamnion wetherbeei SAG_119_79)
TCGCCCAAAATCGATAGGAGGCATCGAGACGAAACCCAGCAACGGCGTCG
CGACGCCGCAACCCTCCAAGGGTTTGCTTGCCATGAAGGTAAAGAAAGCT
TAGCTTTCTAACCGAGATGTCCAATAGACCTAACAAATGGGGCTGTTGCC
TCTCCGAGGTGTTCTGAAATCACTTCTTTCACCGTTCGTCTCGATCCCAT
CTTCTTATTTCTGCAATCGTCTGGACACAGTTCATGCAACGGCACGCTGA
ATCGGCAAAAAGTGCTGCCAAAGAGGAGCCTGCTGTCGACGCGAAGGCCG
GGGACACGGAGTGGTCACGGTACACGAGGCAAAGCGGCGGCGGGTGAGGC
TCAGCGCGGCGCTTTGTCCTTAATTTCTCCTTTTTGACCACATTTCCAAC
TGGACTCAGACTTCTTGCGACGGTGCTTGTTCTGCCTGCCATATTTCGGC
CTGATCATGTAGTTCTCCCATGTTCGTGATGCCGTTTCCGTTGGATCTGC
TATTGTTTCCTCTTTCTTTCTTATCCCATATATACGCGAGGCAAGCGATA
AACCTAGTATTCCTGGCATGCTTCCTTCTGCTCTCGTCTTTCATCGCGCA
GGCTCGTGTGCATCGCGGACGAGCAGGAGCCACGGGACCTCCTGCTGGGG
CGGCGCTCCTTTGGAGGCTTCTCGCCGGTCGTCGAGACGGCTTACGACAA
GTGCCTGCAGGAACTCAAGCTCCGGGCCAAAGCGGCGGCAGCGGCGGCGG
CGGCAGGCGGCGATGACAACGATGCCGCGGACGCCACCGGCGAGGAGGCG
GAGTTGAAGAAGCGTTTTGGAGGATACATCAATGCGGGGCGGAAAGGAGG
CGGCGGTAGTAGCGGCGGCGGTGGCCGCGGCGGCGGAGGCGGAGGCGGCA
GTTCATCGGGGCAGAAACCAAGCAAACGGCCAAGAACGTAAAATGAATGG
CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7224:1564..2517-

>mRNA_P-wetherbeei_contig7224.2.1 ID=mRNA_P-wetherbeei_contig7224.2.1|Name=mRNA_P-wetherbeei_contig7224.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig7224:1564..2517- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACGGCACGCTGAATCGGCAAAAAGTGCTGCCAAAGAGGAGCCTGC
TGTCGACGCGAAGGCCGGGGACACGGAGTGGTCACGGTACACGAGGCAAA
GCGGCGGCGGGCTCGTGTGCATCGCGGACGAGCAGGAGCCACGGGACCTC
CTGCTGGGGCGGCGCTCCTTTGGAGGCTTCTCGCCGGTCGTCGAGACGGC
TTACGACAAGTGCCTGCAGGAACTCAAGCTCCGGGCCAAAGCGGCGGCAG
CGGCGGCGGCGGCAGGCGGCGATGACAACGATGCCGCGGACGCCACCGGC
GAGGAGGCGGAGTTGAAGAAGCGTTTTGGAGGATACATCAATGCGGGGCG
GAAAGGAGGCGGCGGTAGTAGCGGCGGCGGTGGCCGCGGCGGCGGAGGCG
GAGGCGGCAGTTCATCGGGGCAGAAACCAAGCAAACGGCCAAGAACGTAA
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