mRNA_P-wetherbeei_contig7209.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7209.2.1
Unique NamemRNA_P-wetherbeei_contig7209.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7209.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7209contigP-wetherbeei_contig7209:787..3033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2247
Hectar predicted targeting categoryother localisation
Exons1
Cds size1293
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.9082217-UTR-P-wetherbeei_contig7209:786..16861683186965.9082217-UTR-P-wetherbeei_contig7209:786..1686Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7209 787..1686 -
1683186965.9282804-UTR-P-wetherbeei_contig7209:2979..30331683186965.9282804-UTR-P-wetherbeei_contig7209:2979..3033Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7209 2980..3033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.9187505-CDS-P-wetherbeei_contig7209:1686..29791683186965.9187505-CDS-P-wetherbeei_contig7209:1686..2979Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7209 1687..2979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7209.2.1prot_P-wetherbeei_contig7209.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7209 1687..2979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7209.2.1

>prot_P-wetherbeei_contig7209.2.1 ID=prot_P-wetherbeei_contig7209.2.1|Name=mRNA_P-wetherbeei_contig7209.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=431bp
MSAVRHLDTAAVHAILRRGVDMTTPDSANRTALHYAAATGKSEIIWAVVR
GLADRRGVGPAALHLGNGSYMQKELQRMSRCMGLNIYAAREEHESNKQHG
GRRLTNKELVSKILESAAGATLGPGLPLPPHSRDLPPDGATTRGQLGKGT
PPTSGFAMEAPELGPLSPVPMQALMSSGGGGGSGGGGGGGGGGSSGANGG
RSRSSSSRAAMSDDDEEYGPPNGKGGKGKSAKTAGRPKGKQAKATAAAAA
AVAAAAAAVAASAVPTAPAAPAASGASTPVPPAPAGGGPQPEAPAMGATA
PAPAPPVQRGSRSKMTTTAAMAAGEGSSPVAAGSGSAAAAGAAPAAPPSG
GAKPAEPAAAMAADASRKRRAEDTYAAAASATPAGEGKAVAAAPARAPAP
ESGKSGATAAEPVQKRARGAEESLAVSGSV*
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mRNA from alignment at P-wetherbeei_contig7209:787..3033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7209.2.1 ID=mRNA_P-wetherbeei_contig7209.2.1|Name=mRNA_P-wetherbeei_contig7209.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2247bp|location=Sequence derived from alignment at P-wetherbeei_contig7209:787..3033- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCCACGCTGAACGACGACCTGGTGCGTGACGGCTCCGGCGAGTGGCA
GCTCATGTCTGCCGTCCGCCACCTGGACACGGCGGCGGTGCACGCGATCC
TGCGGCGCGGCGTGGACATGACGACACCCGACAGCGCGAACCGCACGGCG
CTGCACTACGCGGCGGCGACGGGCAAGTCGGAGATCATCTGGGCTGTCGT
GCGTGGCCTGGCGGACCGGCGCGGCGTCGGCCCCGCCGCGCTGCATCTCG
GCAACGGCAGCTACATGCAGAAGGAGTTGCAGCGCATGAGCCGCTGCATG
GGGCTCAACATCTACGCGGCGCGAGAGGAGCACGAGTCTAACAAGCAGCA
TGGCGGCCGCCGCCTCACCAACAAGGAGCTCGTCAGCAAGATCCTCGAGT
CCGCCGCCGGTGCCACGCTCGGCCCCGGCCTGCCGCTGCCGCCGCACTCT
CGCGACCTGCCGCCAGACGGCGCCACCACCCGCGGCCAGCTCGGCAAGGG
AACTCCGCCAACATCGGGCTTCGCCATGGAGGCCCCCGAACTCGGGCCCC
TGTCGCCCGTGCCCATGCAGGCGCTCATGTCGTCTGGCGGCGGCGGCGGG
TCTGGCGGTGGCGGCGGCGGCGGCGGCGGCGGTTCCAGCGGCGCCAACGG
CGGCCGAAGCCGGTCGTCGTCGTCGCGGGCAGCAATGTCGGACGACGACG
AGGAGTACGGCCCGCCGAACGGCAAGGGTGGCAAGGGCAAGTCGGCGAAG
ACGGCCGGGCGGCCAAAGGGCAAGCAGGCGAAGGCCACGGCGGCGGCGGC
GGCGGCAGTGGCTGCTGCGGCAGCAGCGGTCGCAGCGTCGGCGGTCCCGA
CGGCACCTGCAGCACCTGCGGCCTCCGGGGCATCGACGCCGGTGCCGCCG
GCCCCGGCCGGAGGCGGGCCGCAGCCAGAAGCCCCCGCCATGGGTGCGAC
GGCGCCGGCACCGGCGCCGCCAGTGCAGCGCGGCTCTCGCAGCAAGATGA
CCACCACCGCTGCCATGGCAGCCGGAGAAGGGTCTTCGCCGGTGGCTGCG
GGCAGCGGCAGCGCCGCAGCTGCGGGCGCGGCGCCGGCCGCCCCTCCCAG
CGGCGGGGCAAAGCCTGCAGAGCCGGCGGCGGCCATGGCAGCTGACGCAT
CGAGGAAGCGGCGGGCCGAGGACACTTATGCCGCGGCGGCGTCGGCGACG
CCGGCGGGGGAGGGGAAGGCGGTGGCGGCGGCGCCGGCGAGAGCTCCGGC
TCCGGAGTCAGGCAAGAGCGGTGCCACTGCCGCCGAGCCTGTCCAAAAGC
GGGCGCGCGGAGCTGAAGAGTCGTTGGCGGTCAGCGGCAGCGTCTAGTGC
TCTAGCGCGGCGAACACGCAATGGATGAAGCGAGCTGTCAAATCGGAGGA
ATGGAGTGGCACGGCCAAGCCGTGCGGTGGATGTCGCATACGGTGCGGCA
CGCAACCAGCAGCTGCGCGGAAACGGACGATCAGCATCGACGTAGCGGTG
CGTCGATATGAACGTGGCGGCGGCGACGACTTGAGCGTGACGCAAGAGCA
GGCAGAGCCGGCGCTTGCGACAGGCTCCTATCGCCGCGGCACCGGCGGCC
AATTCTGCAGCGACAGGAGATGGAAGGAATGCTCTTCAACACGGAGGGAA
TCGGAGAGAGGGAGGGCGGATCGCTACCACGAGGGCCATCATAGCTCGGC
GCGGGCATTTTCGTCTTAAGCGGCGGCTTGGAAGACGGCGGCAGCGGTGG
CGGGCGGCCGGTCTAAAAGGCGGCGGTTCCTGGTGCTGCTGCCGTCGAGG
CTGCCGCGCCGCTCAGAGCATTTCGTACGATAAAACTTGGATCTGGGCAC
GGCCGGCTTCAACGGGCGCGTGCTGCATTTTGCGGCAAAGGCCAAAAAAG
CAAACAAAAGGACTGAGTTTGGGAGGGTCGGGGAACGAAGAGCGCGTTGC
CGCGTCTGGCACCGTTATGCGGCAAAGCGGCAGCGGAAATAAGGCGCGCG
GACGGGCGCGTCTTGGGCGGTTTGGGCGGGCGGGAAGGAGGCGGGGAAAG
ACGGTGCTGGGGGAAGCAAGGCACTATGGATTGTTTTGCGACTGCGAGAA
TGGGAGGGGCGTAGTCGTTTGCAGAGTGCGCGGGCCGTTGTTCTTGTGCT
GGGCGGCAGTTGGAGCCTGGCGGCGGCGGGGCAAGGTATGCCGGAGCAGA
AGCGAAGATCTTGGCGCATTGCGACGTAAAAGTACAAATTCAGAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7209:787..3033-

>mRNA_P-wetherbeei_contig7209.2.1 ID=mRNA_P-wetherbeei_contig7209.2.1|Name=mRNA_P-wetherbeei_contig7209.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1293bp|location=Sequence derived from alignment at P-wetherbeei_contig7209:787..3033- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGCCGTCCGCCACCTGGACACGGCGGCGGTGCACGCGATCCTGCG
GCGCGGCGTGGACATGACGACACCCGACAGCGCGAACCGCACGGCGCTGC
ACTACGCGGCGGCGACGGGCAAGTCGGAGATCATCTGGGCTGTCGTGCGT
GGCCTGGCGGACCGGCGCGGCGTCGGCCCCGCCGCGCTGCATCTCGGCAA
CGGCAGCTACATGCAGAAGGAGTTGCAGCGCATGAGCCGCTGCATGGGGC
TCAACATCTACGCGGCGCGAGAGGAGCACGAGTCTAACAAGCAGCATGGC
GGCCGCCGCCTCACCAACAAGGAGCTCGTCAGCAAGATCCTCGAGTCCGC
CGCCGGTGCCACGCTCGGCCCCGGCCTGCCGCTGCCGCCGCACTCTCGCG
ACCTGCCGCCAGACGGCGCCACCACCCGCGGCCAGCTCGGCAAGGGAACT
CCGCCAACATCGGGCTTCGCCATGGAGGCCCCCGAACTCGGGCCCCTGTC
GCCCGTGCCCATGCAGGCGCTCATGTCGTCTGGCGGCGGCGGCGGGTCTG
GCGGTGGCGGCGGCGGCGGCGGCGGCGGTTCCAGCGGCGCCAACGGCGGC
CGAAGCCGGTCGTCGTCGTCGCGGGCAGCAATGTCGGACGACGACGAGGA
GTACGGCCCGCCGAACGGCAAGGGTGGCAAGGGCAAGTCGGCGAAGACGG
CCGGGCGGCCAAAGGGCAAGCAGGCGAAGGCCACGGCGGCGGCGGCGGCG
GCAGTGGCTGCTGCGGCAGCAGCGGTCGCAGCGTCGGCGGTCCCGACGGC
ACCTGCAGCACCTGCGGCCTCCGGGGCATCGACGCCGGTGCCGCCGGCCC
CGGCCGGAGGCGGGCCGCAGCCAGAAGCCCCCGCCATGGGTGCGACGGCG
CCGGCACCGGCGCCGCCAGTGCAGCGCGGCTCTCGCAGCAAGATGACCAC
CACCGCTGCCATGGCAGCCGGAGAAGGGTCTTCGCCGGTGGCTGCGGGCA
GCGGCAGCGCCGCAGCTGCGGGCGCGGCGCCGGCCGCCCCTCCCAGCGGC
GGGGCAAAGCCTGCAGAGCCGGCGGCGGCCATGGCAGCTGACGCATCGAG
GAAGCGGCGGGCCGAGGACACTTATGCCGCGGCGGCGTCGGCGACGCCGG
CGGGGGAGGGGAAGGCGGTGGCGGCGGCGCCGGCGAGAGCTCCGGCTCCG
GAGTCAGGCAAGAGCGGTGCCACTGCCGCCGAGCCTGTCCAAAAGCGGGC
GCGCGGAGCTGAAGAGTCGTTGGCGGTCAGCGGCAGCGTCTAG
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