mRNA_P-wetherbeei_contig7204.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7204.2.1
Unique NamemRNA_P-wetherbeei_contig7204.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: D7G7Y2_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Y2_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.470e-29
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGLL 273
            NRWAMV PAFLTHMCIGSP+ WSVMSGTIS+ELG +++AA DWS+AE T+P+ +VFA  GLAAA+GG+WA +            C   G++
Sbjct:   39 NRWAMVAPAFLTHMCIGSPWAWSVMSGTISRELGIVSSAAGDWSMAEATMPMSIVFATLGLAAALGGSWAHKVGPRMSMSAASLCFGGGVM 129          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A835Z4T5_9STRA (Major facilitator transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.660e-28
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGLL 273
            NRWAMVLPAFLTHMCIG+P+ WSVMS T+S+E G    +AADWSI   T+P+ + FA QG++AA+GG+WA+R    +   L   C   GL+
Sbjct:   83 NRWAMVLPAFLTHMCIGTPWAWSVMSSTLSREFGVAGASAADWSITAATMPLSVAFALQGISAALGGSWALRVGPRKAMGLAGLCFGGGLM 173          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A5A8E8W6_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8W6_CAFRO)

HSP 1 Score: 108 bits (271), Expect = 1.050e-25
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 RWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGL 270
            RWAM+ PAFLTHMCIG PY WSVMS  +++ELG +  +AADWS+A+ TLPI LVFA QG+AAA+ G W          ++   C S GL
Sbjct:  109 RWAMMAPAFLTHMCIGHPYAWSVMSSPLTRELGVVAASAADWSLAQATLPISLVFAAQGVAAAVAGPWLANIGPRASMMIAAACFSGGL 197          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A7S1GCY3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCY3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.890e-25
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGLL 273
            NRWAMV+PAF TH+CIGSP+GWSV++G + +E GF+T AA DW+ A+  +P+ +VFA QGL+AA   +W M+  A         C   GL+
Sbjct:   47 NRWAMVVPAFATHLCIGSPWGWSVLAGPVGREYGFVTAAAEDWTFAQVAMPMSIVFALQGLSAAAAASWQMKVGARASMATAGACFGGGLV 137          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A0K2U1R3_LEPSM (Uncharacterized protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2U1R3_LEPSM)

HSP 1 Score: 107 bits (268), Expect = 2.390e-25
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSD 264
            NRW+M +PAF TH+C+GSPYGWS +SGTI++ELGF+  A+ADWS+  CT P+ ++ AF G+AAA+ G W M+    +      FCG  
Sbjct:   47 NRWSMFVPAFATHVCLGSPYGWSAISGTINKELGFVAPASADWSLDMCTYPMSIMIAFGGIAAAVFGKWTMKVGTRKAL----FCGGS 130          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A482RXS0_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXS0_9ARCH)

HSP 1 Score: 100 bits (249), Expect = 4.070e-24
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    4 RWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGLL 273
            RW M++PAF+ H+CIGSPY WS+M+  +++ELGF+ ++A DW++ +  LP+ LVF FQGLAAA  G W ++    +       C   GLL
Sbjct:   81 RWTMLVPAFMNHLCIGSPYAWSMMADELTRELGFVVSSAQDWTLMQAALPLSLVFIFQGLAAAYFGKWQIKVGVRKSLFAAASCFGGGLL 170          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A7S0STR4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STR4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.940e-20
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGLL 273
            +RW M +PAF THMCIGSP+ WS+M+   ++E+GF+  AAADWS+ +   P+ +VF  QG++A+I G W  R    +           GLL
Sbjct:   65 SRWLMAIPAFGTHMCIGSPWAWSIMADVATREIGFVAPAAADWSLMQAAFPLSMVFLLQGVSASIVGKWQARVGPRKAMAAASIAFGGGLL 155          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A482RPS1_9ARCH (MFS transporter (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPS1_9ARCH)

HSP 1 Score: 90.1 bits (222), Expect = 6.520e-20
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNWAMR 216
            +RW+M++PA   H+CIGSPY WS+M+ TI++E GF+ +AA+DWS+ E   P+ +VF   GL+ +I G W ++
Sbjct:   86 SRWSMIVPAAAIHLCIGSPYAWSLMADTITKEAGFVLSAASDWSLMEAAFPLSIVFVAHGLSGSIFGKWQLK 157          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A7R9YJV2_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YJV2_DIALT)

HSP 1 Score: 87.4 bits (215), Expect = 3.500e-18
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSP-YGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNW 207
            NRWAM++PAF TH+C+G P +GWSV+S  I +E GF+ +AA DW++ + T+P+ + F F GLA A  G W
Sbjct:   17 NRWAMMVPAFTTHLCLGGPGFGWSVLSSAIVREHGFVCSAATDWTLFDVTMPMPIFFTFLGLAGAAFGKW 86          
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Match: A0A8J5XFQ0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFQ0_DIALT)

HSP 1 Score: 87.4 bits (215), Expect = 3.900e-18
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 NRWAMVLPAFLTHMCIGSP-YGWSVMSGTISQELGFLTTAAADWSIAECTLPIQLVFAFQGLAAAIGGNW 207
            NRWAM++PAF TH+C+G P +GWSV+S  I +E GF+ +AA DW++ + T+P+ + F F GLA A  G W
Sbjct:   66 NRWAMMVPAFTTHLCLGGPGFGWSVLSSAIVREHGFVCSAATDWTLFDVTMPMPIFFTFLGLAGAAFGKW 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7204.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G7Y2_ECTSI1.470e-2958.24Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
A0A835Z4T5_9STRA3.660e-2854.95Major facilitator transporter n=1 Tax=Tribonema mi... [more]
A0A5A8E8W6_CAFRO1.050e-2555.06Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1GCY3_9STRA1.890e-2549.45Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0K2U1R3_LEPSM2.390e-2551.14Uncharacterized protein n=3 Tax=Lepeophtheirus sal... [more]
A0A482RXS0_9ARCH4.070e-2445.56MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A7S0STR4_9STRA1.940e-2042.86Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A482RPS1_9ARCH6.520e-2047.22MFS transporter (Fragment) n=1 Tax=archaeon TaxID=... [more]
A0A7R9YJV2_DIALT3.500e-1851.43Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A8J5XFQ0_DIALT3.900e-1851.43Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7204contigP-wetherbeei_contig7204:2769..3041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7Y2
PFAMsMFS_1,Sugar_tr
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-26
EggNOG OGsCOG0477@1|root,2QWN5@2759|Eukaryota
DescriptionMajor Facilitator Superfamily
Cds size261
COG categoryEGP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.6261246-UTR-P-wetherbeei_contig7204:2768..27801683186965.6261246-UTR-P-wetherbeei_contig7204:2768..2780Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7204 2769..2780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.63841-CDS-P-wetherbeei_contig7204:2780..30411683186965.63841-CDS-P-wetherbeei_contig7204:2780..3041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7204 2781..3041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7204.2.1prot_P-wetherbeei_contig7204.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7204 2781..3041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7204.2.1

>prot_P-wetherbeei_contig7204.2.1 ID=prot_P-wetherbeei_contig7204.2.1|Name=mRNA_P-wetherbeei_contig7204.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MVLPAFLTHMCIGSPYGWSVMSGTISQELGFLTTAAADWSIAECTLPIQL
VFAFQGLAAAIGGNWAMRASACQRFLLCDFCGSDGLL
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mRNA from alignment at P-wetherbeei_contig7204:2769..3041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7204.2.1 ID=mRNA_P-wetherbeei_contig7204.2.1|Name=mRNA_P-wetherbeei_contig7204.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig7204:2769..3041+ (Phaeothamnion wetherbeei SAG_119_79)
AACCGCTGGGCCATGGTCTTGCCGGCCTTCCTGACGCACATGTGCATCGG TTCGCCCTACGGCTGGTCCGTCATGTCCGGAACCATCTCGCAAGAGCTCG GCTTCTTGACGACGGCGGCGGCCGACTGGTCCATTGCCGAGTGCACGCTG CCGATTCAGCTCGTCTTCGCGTTCCAGGGACTCGCCGCGGCCATCGGCGG CAACTGGGCCATGCGGGCGAGTGCTTGTCAGCGTTTTCTTTTGTGCGACT TTTGTGGCAGCGACGGTCTTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7204:2769..3041+

>mRNA_P-wetherbeei_contig7204.2.1 ID=mRNA_P-wetherbeei_contig7204.2.1|Name=mRNA_P-wetherbeei_contig7204.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig7204:2769..3041+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTTGCCGGCCTTCCTGACGCACATGTGCATCGGTTCGCCCTACGG
CTGGTCCGTCATGTCCGGAACCATCTCGCAAGAGCTCGGCTTCTTGACGA
CGGCGGCGGCCGACTGGTCCATTGCCGAGTGCACGCTGCCGATTCAGCTC
GTCTTCGCGTTCCAGGGACTCGCCGCGGCCATCGGCGGCAACTGGGCCAT
GCGGGCGAGTGCTTGTCAGCGTTTTCTTTTGTGCGACTTTTGTGGCAGCG
ACGGTCTTCTG
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