mRNA_P-wetherbeei_contig719.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig719.1.2
Unique NamemRNA_P-wetherbeei_contig719.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig719.1.2 vs. uniprot
Match: UPI00193A6B84 (LOW QUALITY PROTEIN: death-inducer obliterator 1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6B84)

HSP 1 Score: 63.2 bits (152), Expect = 2.480e-6
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 2 
Query:  806 YCLCGAPNNGAGMVSCDVCEGWFHNACVNVDTAVLKEIEFRGEQRAARKAAGDADDASDEPDFMCPRCCRDAGVEYRYGHVDVDRPLEH 1072
            +C+C  P+NG  M+SCDVCE WFH  CV V     K++E +GE+                  ++CP C +  G + ++ H      L H
Sbjct:  218 WCICKKPHNGRFMISCDVCEEWFHGDCVGVTVQRGKQMEKKGEE------------------YVCPSCLKSKGKQPKHKHNSDKESLRH 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig719.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00193A6B842.480e-632.58LOW QUALITY PROTEIN: death-inducer obliterator 1-l... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig719contigP-wetherbeei_contig719:239..3478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR56
Preferred nameCTF1
PFAMsELM2,PHD,PLU-1,PRF
Model size2647
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0023051,GO:0023052,GO:0030545,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0098772
Exons3
Evalue3.71e-16
EggNOG OGsKOG1633@1|root,KOG1633@2759|Eukaryota
Descriptiondemethylase
Cds size1701
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.205218-UTR-P-wetherbeei_contig719:238..6201683186964.205218-UTR-P-wetherbeei_contig719:238..620Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig719 239..620 +
1683186964.2495658-UTR-P-wetherbeei_contig719:2914..34781683186964.2495658-UTR-P-wetherbeei_contig719:2914..3478Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig719 2915..3478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.2174726-CDS-P-wetherbeei_contig719:620..10161683186964.2174726-CDS-P-wetherbeei_contig719:620..1016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig719 621..1016 +
1683186964.2275-CDS-P-wetherbeei_contig719:1537..17301683186964.2275-CDS-P-wetherbeei_contig719:1537..1730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig719 1538..1730 +
1683186964.238448-CDS-P-wetherbeei_contig719:1802..29141683186964.238448-CDS-P-wetherbeei_contig719:1802..2914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig719 1803..2914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig719.1.2prot_P-wetherbeei_contig719.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig719 621..2914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig719.1.2

>prot_P-wetherbeei_contig719.1.2 ID=prot_P-wetherbeei_contig719.1.2|Name=mRNA_P-wetherbeei_contig719.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=567bp
MFLSFLLLSFFLSFFLFSFRSRLILECLQTLLWCALMRWALHDRPSGLKP
PLATLQFLLQYARHLKVRDGAITAFLEQVVLRAQAWQAEARAALAPKPNY
AAGEAVSEAAIRRLHAKLRGIPVRIPEERALQAVMAEGCERYCLCGAPNN
GAGMVSCDVCEGWFHNACVNVDTAVLKEIEFRGEQRAARKAAGDADDASD
EPDFMCPRCCRDAGVEYRYGHVDVDRPLEHSRTLWAEDPAESDAPTERDV
DEYWPPMIFKYVAAIDIAETPTHGGGGGGGGAGGGERGGGGVGIGSASSG
GGDGSGSGSDGGGGGSGAGSDRGGSKNGGGSSGGAPVANRTMLLPPLQHA
IQHGAGAAGPPSQRSMQFSGVNTASMMAAANGGRHDGGGRHDGGGSGRGG
GGNVGGADAHFAAGYHYPQAGIGGLHGQPMNPWHMSRDALPGPHVLGSGG
GGHHASLAAAAYGHAAAAAAAQSHAYAHSYGLPSPGSAAPYGTPPQHMIA
QPGPPLIYPRHGPSGLPSGGGGGSRGGGGRGGRGGGASRGKRVRDGAGGG
GGGGGKRRQSGPPGSV*
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mRNA from alignment at P-wetherbeei_contig719:239..3478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig719.1.2 ID=mRNA_P-wetherbeei_contig719.1.2|Name=mRNA_P-wetherbeei_contig719.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3240bp|location=Sequence derived from alignment at P-wetherbeei_contig719:239..3478+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGTCGCCGTCCCCCCGTGGGTGGTGAAGGCCAGGTGGGTGCTGCCG
GCCGTGAAGGGCAGGAAAAAAAGTCCGGAAGGGCCGGGAAACTGAAACCG
GACTGGACCGGATTCGGATCGAAGACGGGATGATGGTGCACTTACGGCCC
TTTCCTGCTTATTCGTTGGGCTTGATTCCGGCTTTGGTATTCTGTTTTTT
CGGGGAGCGGCTGTGAGTCGATTAACTTTGGCCCATCGCCTGTCGCTTTG
CCGCTTGTTTGGCAGCTGGCCGCTGTGAAGCTGAGAGCTTGGGCCGAGCT
CCCTGGCCATCCTTTTCCGCCGCCGCAGTCATCTTACTACTTCGGCATTT
CTCGTTTGTTTATCGTTTTCGCATTTCTTCCCATGTTTCTTTCTTTCTTG
CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTCTTTCCGTTCCAGGCT
GATCCTCGAGTGCCTGCAGACGCTGCTGTGGTGCGCCCTCATGCGATGGG
CCCTTCACGATCGCCCCAGCGGCCTCAAGCCACCGCTCGCCACCCTCCAG
TTCCTGCTGCAGTACGCCCGCCACCTCAAAGTCCGCGACGGCGCCATCAC
GGCCTTCCTCGAGCAGGTCGTGCTCCGGGCGCAGGCGTGGCAGGCGGAGG
CGCGGGCGGCGCTCGCCCCCAAGCCCAACTACGCAGCGGGGGAGGCCGTG
AGCGAGGCGGCGATCCGGCGGCTGCATGCTAAGCTGCGAGGGATTCCCGT
CCGCATTCCCGAGGAACGCGCACTGCAGGTGAGTCGACTGGCTGGAGTGC
TTTGGGAGTCAAGTCTGATGGAGGAGTGTCAGGAGGTTAGGAGGTGGATG
GGATGGGTGGGGCTTGGCTGCTCGCGTTGTAAGACATTTCGGGACCGCTT
ACTGCATGTTCCGTTCATTTGGTTGGAGACGCCGGTTGCCGCTTTTGGGA
AGGCTTGGGAAAGGATTGGGCTGTACTGGACGGTTGGGAGAAGGTAGGTT
ATCGAGTGTTTGGGGGGTCTTTGAAGGGGTGTTGGAAGACATGCAGACCA
GATGGGAAGGAAGTATTGAAGGGTGGTTTTCGTTCTGGCGTCAGTCGGCT
CCTTGGCCAGTTTGGCGGTGGCCCTGTTTTCTGGCTTCGTTGTGCGGCGT
TCTTTTCTCGGCAACGCTAACTCCCGAAGTTCTTTTCCGCCCCGCACTTG
GCCTGCCGTGTCCGCCCGCCTGCCTGCCCACAACTATGCCCGCGCATCAC
CCGTCGTTCTGCGGTCGTCGTTCGTCGTCTACCTTTTATCTGCCGGCAGG
CCGTCATGGCGGAGGGCTGCGAGCGCTACTGTCTTTGCGGCGCCCCCAAC
AATGGCGCGGGCATGGTGTCGTGCGACGTCTGTGAGGGCTGGTTCCACAA
CGCCTGCGTCAACGTCGACACTGCCGTTCTCAAGGAGATCGAGTTCCGAG
GCGAGCAGCGGGCCGCCCGCAAGGCCGCCGGCGACGCCGATGGCGGCGCC
GGCGCCGCCATGGACGACGACGGCGGTAACGGCGGTGGCGGCGGCGGCGC
CGGCGCCGCCATAGATGCGTCGGATGAGCCGGACTTCATGTGCCCGCGTT
GTTGCCGCGACGCGGGCGTCGAGTACCGATACGGCCACGTGGACGTCGAC
CGGCCGCTGGAGCACTCACGGACGCTGTGGGCCGAGGATCCCGCCGAGTC
CGACGCACCGACGGAGCGGGATGTCGACGAGTATTGGCCGCCCATGATTT
TCAAGTACGTCGCGGCTATTGACATCGCCGAAACGCCCACCCACGGCGGC
GGCGGCGGCGGCGGTGGCGCCGGTGGCGGCGAGCGCGGGGGCGGGGGTGT
AGGTATCGGCAGCGCCAGCAGTGGCGGCGGCGACGGCTCCGGCAGCGGCA
GCGATGGCGGAGGCGGCGGCAGTGGTGCCGGATCGGACCGCGGCGGCAGC
AAGAATGGCGGCGGCAGCAGCGGGGGCGCCCCAGTGGCAAACCGAACGAT
GCTCCTGCCGCCCCTTCAGCATGCCATCCAGCACGGCGCGGGCGCCGCGG
GCCCGCCGTCACAGCGCTCGATGCAGTTCAGTGGCGTGAACACGGCGTCC
ATGATGGCCGCGGCCAACGGCGGCCGACACGACGGCGGCGGCCGGCACGA
CGGCGGCGGCAGCGGCCGTGGTGGTGGCGGGAATGTCGGCGGTGCCGACG
CGCATTTTGCGGCCGGCTACCACTACCCGCAGGCGGGCATCGGCGGGTTG
CATGGGCAGCCAATGAACCCGTGGCACATGTCGCGGGACGCGCTGCCGGG
CCCGCACGTGCTTGGCAGTGGCGGTGGCGGCCACCACGCGTCGCTGGCGG
CGGCAGCCTACGGACATGCTGCCGCGGCGGCGGCGGCGCAGTCGCACGCC
TATGCGCACAGCTACGGGCTGCCGTCGCCGGGGTCGGCGGCGCCCTATGG
GACGCCGCCACAGCACATGATTGCACAGCCAGGGCCGCCCCTCATCTACC
CGCGGCACGGGCCCTCCGGCCTGCCCTCCGGTGGTGGCGGCGGCAGTCGT
GGCGGCGGTGGCAGGGGTGGCCGCGGCGGCGGCGCCAGCCGGGGCAAGCG
GGTGCGGGACGGAGCGGGCGGCGGCGGAGGTGGCGGTGGCAAGCGGCGGC
AGAGCGGGCCGCCTGGATCGGTTTGAGGAAAGAGAGAAGACGAAAGGAAG
AACCTGAAAGGGTCAAGCTAGCCATCCAGCGGCACACGCGTTTTGAACTC
TTTTGACATTTGGGGGAAGAGGGGAGGAGAGCGCGCCAACGCCAGTGCCG
GTGCCACACGGGAGCCTCACAGGAACGGAACGGAAGAGAACGACAATGAT
CGGATGAAATGAGCGCAAGAGCTACACAAGAAATGATGGGTGGACCGGAG
AGGCTCGCATGCACGCGTATCCCCCGCCCGTCGCAGCCACAGCCACATTC
GGCTGCTGTAATGGCGACACCGGTGCGATCGGGACCGCAGAAAGCGAGAT
AGTGGCGTGGGGATGGGGAATGCGGGGGTTGTGTAAGGATCCTACCGAAA
CGGGCACCGAGGGTTTCTGGGAAAGGAAATGTGGGGCGGCACAGGGTAAG
GGGCGGGATGCCCACGCCGCTGCAGCTGCAGTCGCGGTGTGGGCCTTTTC
TTTCCGGCGGGGCGGGTGCAAAACATCCAACTGCCCGCGCCAGCGCAGCC
GATTCTTCTAATTCCATGAATGCAAAACGCACTTATGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig719:239..3478+

>mRNA_P-wetherbeei_contig719.1.2 ID=mRNA_P-wetherbeei_contig719.1.2|Name=mRNA_P-wetherbeei_contig719.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1701bp|location=Sequence derived from alignment at P-wetherbeei_contig719:239..3478+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCTTTCTTTCTTGCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTT
CTCTTTCCGTTCCAGGCTGATCCTCGAGTGCCTGCAGACGCTGCTGTGGT
GCGCCCTCATGCGATGGGCCCTTCACGATCGCCCCAGCGGCCTCAAGCCA
CCGCTCGCCACCCTCCAGTTCCTGCTGCAGTACGCCCGCCACCTCAAAGT
CCGCGACGGCGCCATCACGGCCTTCCTCGAGCAGGTCGTGCTCCGGGCGC
AGGCGTGGCAGGCGGAGGCGCGGGCGGCGCTCGCCCCCAAGCCCAACTAC
GCAGCGGGGGAGGCCGTGAGCGAGGCGGCGATCCGGCGGCTGCATGCTAA
GCTGCGAGGGATTCCCGTCCGCATTCCCGAGGAACGCGCACTGCAGGCCG
TCATGGCGGAGGGCTGCGAGCGCTACTGTCTTTGCGGCGCCCCCAACAAT
GGCGCGGGCATGGTGTCGTGCGACGTCTGTGAGGGCTGGTTCCACAACGC
CTGCGTCAACGTCGACACTGCCGTTCTCAAGGAGATCGAGTTCCGAGGCG
AGCAGCGGGCCGCCCGCAAGGCCGCCGGCGACGCCGATGATGCGTCGGAT
GAGCCGGACTTCATGTGCCCGCGTTGTTGCCGCGACGCGGGCGTCGAGTA
CCGATACGGCCACGTGGACGTCGACCGGCCGCTGGAGCACTCACGGACGC
TGTGGGCCGAGGATCCCGCCGAGTCCGACGCACCGACGGAGCGGGATGTC
GACGAGTATTGGCCGCCCATGATTTTCAAGTACGTCGCGGCTATTGACAT
CGCCGAAACGCCCACCCACGGCGGCGGCGGCGGCGGCGGTGGCGCCGGTG
GCGGCGAGCGCGGGGGCGGGGGTGTAGGTATCGGCAGCGCCAGCAGTGGC
GGCGGCGACGGCTCCGGCAGCGGCAGCGATGGCGGAGGCGGCGGCAGTGG
TGCCGGATCGGACCGCGGCGGCAGCAAGAATGGCGGCGGCAGCAGCGGGG
GCGCCCCAGTGGCAAACCGAACGATGCTCCTGCCGCCCCTTCAGCATGCC
ATCCAGCACGGCGCGGGCGCCGCGGGCCCGCCGTCACAGCGCTCGATGCA
GTTCAGTGGCGTGAACACGGCGTCCATGATGGCCGCGGCCAACGGCGGCC
GACACGACGGCGGCGGCCGGCACGACGGCGGCGGCAGCGGCCGTGGTGGT
GGCGGGAATGTCGGCGGTGCCGACGCGCATTTTGCGGCCGGCTACCACTA
CCCGCAGGCGGGCATCGGCGGGTTGCATGGGCAGCCAATGAACCCGTGGC
ACATGTCGCGGGACGCGCTGCCGGGCCCGCACGTGCTTGGCAGTGGCGGT
GGCGGCCACCACGCGTCGCTGGCGGCGGCAGCCTACGGACATGCTGCCGC
GGCGGCGGCGGCGCAGTCGCACGCCTATGCGCACAGCTACGGGCTGCCGT
CGCCGGGGTCGGCGGCGCCCTATGGGACGCCGCCACAGCACATGATTGCA
CAGCCAGGGCCGCCCCTCATCTACCCGCGGCACGGGCCCTCCGGCCTGCC
CTCCGGTGGTGGCGGCGGCAGTCGTGGCGGCGGTGGCAGGGGTGGCCGCG
GCGGCGGCGCCAGCCGGGGCAAGCGGGTGCGGGACGGAGCGGGCGGCGGC
GGAGGTGGCGGTGGCAAGCGGCGGCAGAGCGGGCCGCCTGGATCGGTTTG
A
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