mRNA_P-wetherbeei_contig7173.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7173.2.1
Unique NamemRNA_P-wetherbeei_contig7173.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7173.2.1 vs. uniprot
Match: D0NN20_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NN20_PHYIT)

HSP 1 Score: 48.9 bits (115), Expect = 7.510e-5
Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:   19 VIPRRFGLKYGPQPTIAMEFKR----------ENS--------GNASEEEAGKVEVLEVTLESLALAGQKADSDAIVAAICSAHGDLIDPAFVSMAQLKRLVERLLVEAAGNLP 306
            ++P RFGLKY P PT+A+E++           ENS        GN +   A K+ V+E     L +  + ++++ I   +   +G  + P  VS  QLKRL++RL+     NLP
Sbjct:    2 IVPTRFGLKYAPIPTLALEYEDDLKGVVDATGENSTSLYVYRDGNGTSLPARKLHVVE-----LPMLTKTSETEQITRQLQQDNGRFLAPGVVSETQLKRLLDRLV----QNLP 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7173.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D0NN20_PHYIT7.510e-532.46Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7173contigP-wetherbeei_contig7173:2093..2910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_13900T0
Model size310
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.78e-05
EggNOG OGs2E51J@1|root,2SBW7@2759|Eukaryota,3QFTI@4776|Peronosporales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_001210.1
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.3161411-UTR-P-wetherbeei_contig7173:2092..21041683186963.3161411-UTR-P-wetherbeei_contig7173:2092..2104Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7173 2093..2104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.3279548-CDS-P-wetherbeei_contig7173:2104..21981683186963.3279548-CDS-P-wetherbeei_contig7173:2104..2198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7173 2105..2198 +
1683186963.3470802-CDS-P-wetherbeei_contig7173:2312..24611683186963.3470802-CDS-P-wetherbeei_contig7173:2312..2461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7173 2313..2461 +
1683186963.358812-CDS-P-wetherbeei_contig7173:2856..29101683186963.358812-CDS-P-wetherbeei_contig7173:2856..2910Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7173 2857..2910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7173.2.1prot_P-wetherbeei_contig7173.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7173 2105..2910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7173.2.1

>prot_P-wetherbeei_contig7173.2.1 ID=prot_P-wetherbeei_contig7173.2.1|Name=mRNA_P-wetherbeei_contig7173.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MPVIPRRFGLKYGPQPTIAMEFKRENSGNASEEEAGKVEVLEVTLESLAL
AGQKADSDAIVAAICSAHGDLIDPAFVSMAQLKRLVERLLVEAAGNLPP
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mRNA from alignment at P-wetherbeei_contig7173:2093..2910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7173.2.1 ID=mRNA_P-wetherbeei_contig7173.2.1|Name=mRNA_P-wetherbeei_contig7173.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=818bp|location=Sequence derived from alignment at P-wetherbeei_contig7173:2093..2910+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGAAGAGAGATGCCAGTGATTCCCAGACGATTCGGTCTCAAATATGG
CCCACAGCCAACAATTGCGATGGAGTTCAAGCGGGAAAACTCAGGCAATG
CGTCGGGTAAGATCTTGGAGGCACTCTTTGGAGCGGCGCGATCTACATGT
TTCCGGCATAAAGACACAGCCAAAAGATGTACACCTGAACCCGTTCCTCT
TTATTGCGCACCGAAAGCAGAAGAAGAGGCAGGCAAAGTCGAGGTGCTCG
AGGTGACGCTCGAGAGCCTCGCGCTGGCCGGGCAGAAGGCCGACTCCGAC
GCCATCGTCGCCGCCATTTGCAGCGCCCACGGCGACCTCATCGACCCGGC
CTTCGTCTCCATGGCGCAGGTCGATCTTTGAAGCACGCCGGCGTTGTACA
GTTTTAAGCTGTTTTTGTTGTTGTCCGCGTTTTCACATTATCATTTTCCT
GTGTTTGCTTTCGACCAGAGGAGCTTTCTTCTGCCATTCTTAGATTAGGT
TTGAATCGTGGTTGTGTCTTAGGTTCCTTTTACTTTCTGAAAGCCGAGCA
AAATTCAACCTGTGTCCAAAGACGTGGCCGGTGCCAAAGCGTTGGCATTA
GCACCTGTGAAGCTACCTTTTTAAGAGCGCTTCGAAGAGAAGTCAATGTT
TCGACTTCGCGCTCAGAGGCCCTTCCTGCAACCTTTCTGCTTGCGCCTTG
AAATAACTTTTCCTGCATTGCATTCATCGCCCGCCCAACCCCCTTCTTTT
CTCCTTTTTGGCAGCTGAAGCGTCTGGTGGAGCGGTTGCTTGTCGAGGCC
GCTGGGAACCTGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7173:2093..2910+

>mRNA_P-wetherbeei_contig7173.2.1 ID=mRNA_P-wetherbeei_contig7173.2.1|Name=mRNA_P-wetherbeei_contig7173.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig7173:2093..2910+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGTGATTCCCAGACGATTCGGTCTCAAATATGGCCCACAGCCAAC
AATTGCGATGGAGTTCAAGCGGGAAAACTCAGGCAATGCGTCGGAAGAAG
AGGCAGGCAAAGTCGAGGTGCTCGAGGTGACGCTCGAGAGCCTCGCGCTG
GCCGGGCAGAAGGCCGACTCCGACGCCATCGTCGCCGCCATTTGCAGCGC
CCACGGCGACCTCATCGACCCGGCCTTCGTCTCCATGGCGCAGCTGAAGC
GTCTGGTGGAGCGGTTGCTTGTCGAGGCCGCTGGGAACCTGCCGCCG
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