mRNA_P-wetherbeei_contig7159.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: D7FHF5_ECTSI (Nup54 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF5_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 7.290e-15 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 241 PSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQAQERQTEAAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQV 591
P ++D + W++A+ DNPDP KL P V+G++ L ++ +Q E KM + ++ ++ EA RR+H+ Q HR L++ +K++ +RC+N PL D+ER+LR RLE V
Sbjct: 109 PPHMDDKTWQKAEEDNPDPSKLAPAAVIGWESLKERLVGQQQEMKKMAEFVALMQNTTRGGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDDERQLRTRLEGV 225
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A7S2UV49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV49_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.660e-12 Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1
Query: 259 RAWEEAQRDNPDPDKLVPYLVVGFDELLQQAQERQTEAAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQVMVHQQGLRQRLKELV 636
+AW+ A+R NPDP+ L P +VG LL + Q + A + +RLR+ V S Q + R +A E R +H ++ LQV+ K+E+LRC L + EE +LR RLEQ+ Q RLK L+
Sbjct: 3 QAWDRAERANPDPESLAPTPIVGQAALLGRIQHQTQHTADLQSYVKRLRDTVHSLQQTAHRTESAMEKSRLRHRRLANKFLQVLLKVEVLRCQGLGVAPEEHQLRARLEQLAKALQDPHSRLKHLL 128
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A7S1U6G9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6G9_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.710e-11 Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 241 PSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQAQERQTEAAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQVM 594
P+ VD+++W+ A+ NP+PD VP V GF+EL ++ Q +Q + +R VG+ + S R A E R++++ RHRLL V++K+E+LRC+ PL ER+ R LE V+
Sbjct: 298 PAWVDEKSWQAAEEANPEPDTCVPTAVFGFNELQERLQFQQQTTRDWASFVKEIRSEVGTITEASLRTQARLETQRQENMLLRHRLLNVIRKVEVLRCLGQPLAHGERQARGDLEGVV 415
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A1X2H0M2_SYNRA (Nucleoporin complex subunit 54-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H0M2_SYNRA) HSP 1 Score: 72.8 bits (177), Expect = 1.070e-10 Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 1
Query: 241 PSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQ----QAQERQTEAAKMNDLAQRLREM-----VGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQV 591
P + D+ WEEAQR NPDP ++VP L VGF ++L+ Q+QE + K+ ++ QRL +GS V E +R+HVE RL++++ +++LR PLHD+E++L + LE++
Sbjct: 320 PPDQDEHLWEEAQRKNPDPARMVPVLAVGFSDVLKRMEVQSQETELHQEKLKEIGQRLENAKQKYYLGSLVN--------LEEKKRRHVEASQRLIRLLGYVQVLRYKGFPLHDDEKKLMEALERL 437
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A6P7SJT7_OCTVU (nucleoporin p54 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7SJT7_OCTVU) HSP 1 Score: 71.6 bits (174), Expect = 2.560e-10 Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 244 SNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQA--QERQTE--AAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQV---MVHQQGLRQRLKELVA 639
+ +D W++A++DNPDPD +P +VGFDELLQ+ QE+QT+ +++ +AQ L E+ + R A + +RKH+ HRLL+V+ K E+ R + + + D E + R +LE + + H + RL EL++
Sbjct: 323 AGIDPLLWQQAKKDNPDPDNFIPVPIVGFDELLQRLKQQEQQTKNHQNRLDLIAQELNELQ----LKHRNTVARMDEAKRKHLNLGHRLLKVIVKQEVYRKLGVAMQDTEEQFRAQLEALQSELNHPTQFKGRLNELLS 457
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A0L8GMI1_OCTBM (Nup54 domain-containing protein n=2 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8GMI1_OCTBM) HSP 1 Score: 70.9 bits (172), Expect = 4.550e-10 Identity = 44/118 (37.29%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 244 SNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQA--QERQTE--AAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLE 585
+ +D W++A++DNPDPD +P +VGFDELLQ+ QE+QT+ +++ +AQ L E+ + R A + +RKH+ HRLL+V+ K E+ R + + + D E + R +LE
Sbjct: 325 AGIDPLLWQQAKKDNPDPDNFIPVPIVGFDELLQRLKQQEQQTKNHQNRLDLIAQELNELQ----LKHRNTVARMDEAKRKHLNLGHRLLKVIVKQEVYRKLGVAMQDTEEQFRAQLE 438
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A812BT47_SEPPH (NUP54 n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BT47_SEPPH) HSP 1 Score: 70.9 bits (172), Expect = 5.450e-10 Identity = 48/140 (34.29%), Postives = 81/140 (57.86%), Query Frame = 1
Query: 241 PSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQA--QERQTEA--AKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQV---MVHQQGLRQRLKELVA 639
P+ +D W++A++DNPDP+ VP +VGF +L Q+ QE+QT+ ++++ +AQ L E+ R A E +RKH+ HRLL+V+ K E+ R + + + D E + R +LE + + H + RL EL++
Sbjct: 545 PAGIDPLLWQQAKKDNPDPESFVPIPIVGFQQLQQRLKQQEQQTKCHQSRIDLIAQELNELQNKH----RNTIARVEEAKRKHLNLGHRLLKVIAKQEVYRKLGVAMQDTEEQFRAQLEALQSELNHPTQFKGRLNELLS 680
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A077WZJ4_9FUNG (Nup54 domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WZJ4_9FUNG) HSP 1 Score: 69.3 bits (168), Expect = 1.140e-9 Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1
Query: 241 PSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQ--QAQERQTEA--AKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLEQV 591
P N D++AW+EAQ+ NPDP +LVP L VGFD++ + +AQERQ A A + ++ +++++ G+ Q + A + +R+ ++ R++++++ ++LR LPL EE +R LE V
Sbjct: 182 PQNHDKKAWDEAQKKNPDPSRLVPALAVGFDDVKKRMEAQERQAGAHLATLKEIEDKIKKLKGADAQST---ANKLDEYKRRQMDLTQRVIKILKYAQVLRNKGLPLTSEEEAMRTLLENV 299
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: A0A482X300_LAOST (Uncharacterized protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482X300_LAOST) HSP 1 Score: 69.3 bits (168), Expect = 1.600e-9 Identity = 39/115 (33.91%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 241 PSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQAQERQTEAAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLE 585
P+ +D R W+ AQ DNPDPDKL+P ++GF+EL +A+ ++ E + R+ E + ++ A R++ ++ HR+L+V+ K E+ R + + L EE LR++LE
Sbjct: 390 PAGIDARLWKSAQLDNPDPDKLIPVPIIGFNELRWRARCQEQETKVHQAVLDRIAEDIAELQRRHSETVAKIAEYRQRFIQLEHRVLKVLVKQEITRNVGVALRPEEDILRNQLE 504
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Match: UPI00193E10A6 (probable nucleoporin Nup54 isoform X2 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E10A6) HSP 1 Score: 68.6 bits (166), Expect = 2.460e-9 Identity = 38/116 (32.76%), Postives = 67/116 (57.76%), Query Frame = 1
Query: 238 CPSNVDQRAWEEAQRDNPDPDKLVPYLVVGFDELLQQAQERQTEAAKMNDLAQRLREMVGSRVQQSRRAAAAAEACRRKHVEQRHRLLQVMQKMELLRCINLPLHDEERRLRDRLE 585
P+ +D R W+ AQ DNPDPDKL+P ++GF+EL +A+ ++ E + R+ E + ++ A R++ ++ HR+L+V+ K E+ R + + L EE LR++L+
Sbjct: 254 APAGIDSRLWKSAQLDNPDPDKLIPVPIIGFNELRWRARCQEQETKVHQAVLDRISEDIAELQRRQSETVAKITEYRQRFLQLEHRVLKVLVKQEITRNVGVALRPEEDVLRNQLD 369 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7159.1.1 >prot_P-wetherbeei_contig7159.1.1 ID=prot_P-wetherbeei_contig7159.1.1|Name=mRNA_P-wetherbeei_contig7159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp MPRLAPFREPIYGGSSLQCSIPLWQFFLYWLAGPNAPQHPCPSNVDQRAWback to top mRNA from alignment at P-wetherbeei_contig7159:520..2816- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7159.1.1 ID=mRNA_P-wetherbeei_contig7159.1.1|Name=mRNA_P-wetherbeei_contig7159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2297bp|location=Sequence derived from alignment at P-wetherbeei_contig7159:520..2816- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7159:520..2816- >mRNA_P-wetherbeei_contig7159.1.1 ID=mRNA_P-wetherbeei_contig7159.1.1|Name=mRNA_P-wetherbeei_contig7159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig7159:520..2816- (Phaeothamnion wetherbeei SAG_119_79)back to top |