mRNA_P-wetherbeei_contig7155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7155.1.1
Unique NamemRNA_P-wetherbeei_contig7155.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: UPI0016055838 (uncharacterized protein LOC118438167 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI0016055838)

HSP 1 Score: 71.6 bits (174), Expect = 3.720e-10
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQ 679
            ++L   A+EA   R   E LG  Q +PT+IH DN +A+ L        +S+HI +RYH+TREL + G +A++ V  ++Q+ADGLT+ +++
Sbjct:  354 ISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLTKPLLK 443          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A226DUK4_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DUK4_FOLCA)

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-10
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQ 679
            ++L   A+EA   R   E LG  Q +PT+IH DN +A+ L        +S+HI +RYH+TREL + G +A++ V  ++Q+ADGLT+ +++
Sbjct: 1249 ISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLTKPLLK 1338          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A226DW10_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DW10_FOLCA)

HSP 1 Score: 67.8 bits (164), Expect = 7.810e-9
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQ 679
            ++L   A+EA   R   E LG  Q +P +IH DN +A+ L        +S+HI +RYH+TREL + G +A++ V  ++Q+ADGL++ +++
Sbjct: 1249 ISLASGAREAVWLRRFLEELGFPQESPKIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLSKPLLK 1338          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A182GY63_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GY63_AEDAL)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLRALRA 703
            + L  AAQEA   R L + L  +Q   T ++EDN + L          +S+HI IRYH+TR++ A G+I ++  +  D +AD LT+ +  ER+R   A
Sbjct:    6 VALSGAAQEAVWLRGLLDELDEKQVQATTVYEDNRSCLDFVALDHQKKRSKHIDIRYHYTRDVCATGVIDLQYCTSEDMIADILTKPLGAERVRKFAA 103          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A8H6P076_9EURO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6P076_9EURO)

HSP 1 Score: 66.2 bits (160), Expect = 1.950e-8
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  368 GCSIRWRDRR*RASMT---------LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQE 682
            G  I W+ R+     T           +A++EA   R + ++LG+   +   ++ DN  A+ L  A   T +S+HI IR+H+TR+L   GIIAVKQ+   + +ADG+T+ +  E
Sbjct:  528 GAPISWQSRKQTCVATSSNEAEYIAASEASREAWWIRAVLKNLGINHGSAVPLYMDNKGAIDLTTALNGTKRSKHIDIRFHYTRDLVKQGIIAVKQIPTKEMVADGMTKPLAAE 641          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A8H6UGS1_9EURO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6UGS1_9EURO)

HSP 1 Score: 65.5 bits (158), Expect = 3.090e-8
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  368 GCSIRWRDRR*RASMT---------LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQE 682
            G  I W+ R+     T           +A++EA   R + + LG+   +   ++ DN  A+ L  A   T +S+HI IR+H+TR+L   GIIAVKQ+   + +ADG+T+ +  E
Sbjct:  386 GAPISWQSRKQTCVATSSNEAEYIAASEASREAWWIRAVLKDLGINHGSAVPLYMDNKGAIDLTTALNGTKRSKHIDIRFHYTRDLVKQGIIAVKQIPTKEMVADGMTKPLATE 499          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A0B1NZC9_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1NZC9_UNCNE)

HSP 1 Score: 60.5 bits (145), Expect = 8.600e-8
Identity = 39/115 (33.91%), Postives = 54/115 (46.96%), Query Frame = 2
Query:  368 GCSIRWRDRR*RASMTL---------FDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQER 685
            GC + WR +      TL         F+A +E    R     L    T P  I EDNT A+  A   G T   RH+RI YH++ E +  G + V+Q+S A   ADG T+ +  E+
Sbjct:    3 GCPVVWRSKLQSTVSTLTCEAENTAIFEAVKECAWIRNFLSELDQMPTGPIPILEDNTGAIKWAKDDGMTSGRRHVRIEYHYSVEESRNGNVDVRQISSAQNAADGFTKPLGSEQ 117          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A182GAZ5_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GAZ5_AEDAL)

HSP 1 Score: 62.4 bits (150), Expect = 1.110e-7
Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  368 GCSIRWRDRR*RASMT---------LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLRALRA 703
            G ++ W  R+     T         L  AAQEA   R L + L  +Q   T ++EDN + L          +S+HI IRYH+TR++ A G+I ++  +  D +AD LT+ +  ER+R   A
Sbjct:  114 GATVSWISRKQSCVATSTMEAEYVALSGAAQEAVWLRGLLDELDEKQVQATTVYEDNRSCLDFVALDHQKKRSKHIDIRYHYTRDVCATGVIDLQYCTSEDMIADILTKPLGAERVRKFAA 234          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A2I0X174_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X174_9ASPA)

HSP 1 Score: 63.9 bits (154), Expect = 1.340e-7
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  416 LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLRALR 700
            L  A  E    R L E L L QT+PTVIH DNT+A+ALA       +++HI I +HF R+   +G I+V  +S  DQ+AD  T+ +   R  ALR
Sbjct: 1114 LSSAVSEILWLRRLVEELHLPQTSPTVIHCDNTSAIALAHNPVFHARTKHIEIDHHFIRDHIDSGHISVTHLSSIDQIADIFTKPLSATRFLALR 1208          
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A5M8PMT3_9LECA (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A5M8PMT3_9LECA)

HSP 1 Score: 63.5 bits (153), Expect = 1.670e-7
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  425 AAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLR 691
            +A EA   R L + LG+   APT+IH DN   L L+    +  +S+HI +RYH+TR+L A G+I +K +  A+  ADGL + ++  + +
Sbjct:  799 SATEAVWLRGLLDELGIPCNAPTMIHADNQGVLTLSKNPKYHKKSKHIHVRYHYTRKLIATGVIELKWLLTAEIKADGLIKALLLSKFK 887          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00160558383.720e-1040.00uncharacterized protein LOC118438167 n=1 Tax=Folso... [more]
A0A226DUK4_FOLCA4.200e-1040.00Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A226DW10_FOLCA7.810e-937.78Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A182GY63_AEDAL1.140e-836.73Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A8H6P076_9EURO1.950e-833.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H6UGS1_9EURO3.090e-833.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0B1NZC9_UNCNE8.600e-833.91Uncharacterized protein n=1 Tax=Uncinula necator T... [more]
A0A182GAZ5_AEDAL1.110e-733.06Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A2I0X174_9ASPA1.340e-743.16Retrovirus-related Pol polyprotein from transposon... [more]
A0A5M8PMT3_9LECA1.670e-738.20Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7155contigP-wetherbeei_contig7155:2259..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3750.XP_008355958.1
PFAMsDUF4094,Galactosyl_T
Model size921
Max annot lvl35493|Streptophyta
KEGG koko:K20855
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-06
EggNOG OGsCOG2801@1|root,KOG2288@1|root,KOG0017@2759|Eukaryota,KOG2288@2759|Eukaryota,37YFR@33090|Viridiplantae,3GNC7@35493|Streptophyta,4JVMK@91835|fabids
Descriptionbeta-1,3-galactosyltransferase 3
Cds size336
COG categoryG
CAZyGT31
BRITEko00000,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.138997-UTR-P-wetherbeei_contig7155:2258..24261683186962.138997-UTR-P-wetherbeei_contig7155:2258..2426Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7155 2259..2426 +
1683186962.169721-UTR-P-wetherbeei_contig7155:2762..31791683186962.169721-UTR-P-wetherbeei_contig7155:2762..3179Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7155 2763..3179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.1569488-CDS-P-wetherbeei_contig7155:2426..27621683186962.1569488-CDS-P-wetherbeei_contig7155:2426..2762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7155 2427..2762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7155.1.1prot_P-wetherbeei_contig7155.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7155 2427..2762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7155.1.1

>prot_P-wetherbeei_contig7155.1.1 ID=prot_P-wetherbeei_contig7155.1.1|Name=mRNA_P-wetherbeei_contig7155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MPTLGLLYYRQPTAATATATPATMTAAASLELVGYRDANLAGCLDSGRSM
TSGLFLLAGGIVAFSSRLQHSVARSTIESEYDALRRRTGGGAATDAAGTS
GLGADGANGYP*
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mRNA from alignment at P-wetherbeei_contig7155:2259..3179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7155.1.1 ID=mRNA_P-wetherbeei_contig7155.1.1|Name=mRNA_P-wetherbeei_contig7155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig7155:2259..3179+ (Phaeothamnion wetherbeei SAG_119_79)
CACCTTAAAAAAAGAGAAAACCTGAGCGACGCTTCCGCACCGATCAGCAT CTCATAAAACAGCACGACAAGCAAGAACGGCAGAGAGAAAGGACACGATG GTGCAGACGCGGGCGAGGGAGAAGACGGCAGACACCACCTACGCCACCAC AAGCGGTACCTTATCGGGATGCCAACGCTGGGGCTGCTCTACTACCGGCA GCCAACAGCGGCGACGGCGACGGCGACACCGGCGACGATGACGGCGGCAG CATCACTCGAGCTGGTGGGCTACCGCGATGCTAATCTCGCAGGATGCTTG GACAGCGGCCGCTCCATGACCAGCGGCCTGTTTCTGCTAGCGGGCGGCAT CGTGGCTTTCTCATCTCGGCTGCAGCATTCGGTGGCGCGATCGACGATAG AGAGCGAGTATGACGCTCTTCGACGCCGCACAGGAGGCGGAGCAGCCACG GACGCTGCCGGAACATCTGGGCTTGGAGCAGACGGCGCCAACGGTTATCC ATGAGGACAACACGGCGGCGCTGGCGCTGGCGATAGCGGCTGGACACACG CACCAGTCGCGCCACATCCGCATCCGCTACCACTTCACGCGGGAGCTGGC GGCGGCGGGCATTATCGCCGTGAAGCAGGTCAGCAGGGCTGACCAGCTGG CCGACGGTCTGACAGAGAACGTCGTTCAGGAGCGGCTGCGGGCGCTTCGG GCTCGCACGATGGGATAAGCATCTGACTTCAGCGGCGCTACCAGTCGGCA GCTAAGGCGGCGGCGAGGCAGCTTTGCGGCCGGGGAGGTTTTCTGTCTGT TTTGGTGCCAGGAAGAGCCGTCATCCCTTAGCGAATCTGCTCGTAGTTCC ACATGCCGCTTTTCTGTGGGCCAGCAGGGCCACGAATTCTCATTAGATAT TTTGTCGACTGGTTGTCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7155:2259..3179+

>mRNA_P-wetherbeei_contig7155.1.1 ID=mRNA_P-wetherbeei_contig7155.1.1|Name=mRNA_P-wetherbeei_contig7155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig7155:2259..3179+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAACGCTGGGGCTGCTCTACTACCGGCAGCCAACAGCGGCGACGGC
GACGGCGACACCGGCGACGATGACGGCGGCAGCATCACTCGAGCTGGTGG
GCTACCGCGATGCTAATCTCGCAGGATGCTTGGACAGCGGCCGCTCCATG
ACCAGCGGCCTGTTTCTGCTAGCGGGCGGCATCGTGGCTTTCTCATCTCG
GCTGCAGCATTCGGTGGCGCGATCGACGATAGAGAGCGAGTATGACGCTC
TTCGACGCCGCACAGGAGGCGGAGCAGCCACGGACGCTGCCGGAACATCT
GGGCTTGGAGCAGACGGCGCCAACGGTTATCCATGA
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