mRNA_P-wetherbeei_contig1022.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1022.2.1
Unique NamemRNA_P-wetherbeei_contig1022.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: UPI000B9165D8 (hypothetical protein n=1 Tax=Methanolobus psychrotolerans TaxID=1874706 RepID=UPI000B9165D8)

HSP 1 Score: 167 bits (423), Expect = 2.220e-46
Identity = 85/162 (52.47%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVRQ 486
            T + + +KSPG P SPITL QL+ F APMLSRN +L Y  S   L + RGLGMKTL ++  RY LP P YSFD  YLTLTLYR   GA++AL+ +V  +L   EK  W+F++++ T+T    +  +  D+RKAQR LKK   +GLLR+VG GP+T YE+VRQ
Sbjct:  338 TPDTINIKSPGEPLSPITLEQLKNFKAPMLSRNPELHYVFSQMDLAEERGLGMKTLQSLPERYNLPFPLYSFDNPYLTLTLYRSSGGAIKALEPKVLLSLNEDEKVGWEFLTSKVTITKKQYVEHMGFDDRKAQRHLKKFADSGLLRKVGSGPSTFYEIVRQ 499          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A8J6T3J6_9DELT (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Candidatus Desulfacyla euxinica TaxID=2841693 RepID=A0A8J6T3J6_9DELT)

HSP 1 Score: 164 bits (414), Expect = 4.500e-45
Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVR 483
            T + V V+SPG+PP PIT+ QLQ F APMLSRN  L Y     +L + +GLG++ +   A +  LPLP+Y+++  YL LTL+R P  A   L   V   L   EK AWQF+ T+++VTS +LM  L  DERKAQRVLKKLM   LLRRVGKGPAT YEV+R
Sbjct:  335 TEDTVTVRSPGLPPPPITVEQLQTFTAPMLSRNPPLHYVFGQMELAEEQGLGIRAMRTGAEKLGLPLPRYTWEDPYLVLTLFRTPEAATHELAKAVAADLNADEKIAWQFVVTKESVTSRELMGKLGFDERKAQRVLKKLMGVNLLRRVGKGPATRYEVIR 495          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A1F3BIJ5_9BACT (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Armatimonadetes bacterium RBG_16_58_9 TaxID=1797287 RepID=A0A1F3BIJ5_9BACT)

HSP 1 Score: 163 bits (412), Expect = 8.520e-45
Identity = 86/161 (53.42%), Postives = 109/161 (67.70%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVR 483
            T + + VKSPG P  PITL QLQ FN+PMLSRN  L Y  +  +L + RGLG+K++   A    LPLP+Y+++  YL LT YR PS A+ AL   ++  L   EK +W FI  ++ VTS+ LM  L  DERKAQRVLKKL  AGL+RRVG+GPAT YE+VR
Sbjct:  335 TADTITVKSPGKPVVPITLEQLQTFNSPMLSRNPVLHYVFARMELAEERGLGLKSMKMHAEAAGLPLPRYAWEDPYLVLTFYRSPSAAIHALTPGLQRHLKADEKESWAFIVGQEYVTSSSLMKELGFDERKAQRVLKKLQDAGLIRRVGRGPATRYEIVR 495          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A7Y5DIW6_9PROT (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Sideroxydans sp. TaxID=2067989 RepID=A0A7Y5DIW6_9PROT)

HSP 1 Score: 160 bits (404), Expect = 1.290e-43
Identity = 84/161 (52.17%), Postives = 112/161 (69.57%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVR 483
            T + + V SPG P  PITLAQLQ+F+APMLSRN  L YA +  +L + RGLG+K++ A A    LPLP Y+++  YLTLTL+R P+ AV+ L   VR  L+  E+ +W+FI+ +QTVTSA+LM  L  DERK QR+LK L  AGLL+RVG   A+ YE ++
Sbjct:  337 TSDTIVVMSPGEPVEPITLAQLQSFSAPMLSRNPVLHYAFAKMELAEERGLGLKSMKARASEAGLPLPTYTWNAPYLTLTLFRSPASAVRVLPPSVRKLLSKDEQASWEFIAGQQTVTSAELMKHLNFDERKVQRILKSLQKAGLLQRVGGARASRYEAIQ 497          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A355E1M0_9BACT (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A355E1M0_9BACT)

HSP 1 Score: 146 bits (369), Expect = 1.520e-38
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVV 480
            T  A+ +KSPG PP P+TL QLQ+FNAPMLSRN  L Y  S   L + RGLG+KTL A A +  LPLP+Y++   YL+LTLYR  +GA + LDAR+  +L+  E+  WQ++STR +V S++  +A+    R A   LK+     LLRR G GP+T Y+V+
Sbjct:  336 TEGAITIKSPGAPPPPVTLEQLQSFNAPMLSRNPALHYVFSRMGLAEERGLGVKTLKADAEKEGLPLPRYAWTAPYLSLTLYRSRAGAERTLDARILASLSKAERYGWQWLSTRDSVASSEYAAAMRVPNRTALNHLKRFADLRLLRRDGSGPSTRYKVL 495          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A3C0ZH22_9BACT (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3C0ZH22_9BACT)

HSP 1 Score: 138 bits (347), Expect = 2.170e-35
Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVR 483
            T + V V+SPG PP PITL QLQ+F APMLSRN  L +  +   + + +GLG+ +L   A    LPLP+YS+D  YL L LYR    A + L   + D L   E+  W+F+ST+ T T A+  S + AD+RKAQR LK+    GL+R VG G    YEVVR
Sbjct:  334 TEDMVTVRSPGEPPPPITLEQLQSFTAPMLSRNPGLHFVFARMGMAEEQGLGIGSLRDRAKELGLPLPRYSWDAPYLVLKLYRSAESATRELTVDILDKLNADERKGWEFLSTKTTFTRAEYESHMEADKRKAQRQLKRFAELGLVRSVGSGRTARYEVVR 494          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A7Z8KN04_9EURY (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Methanolobus TaxID=2220 RepID=A0A7Z8KN04_9EURY)

HSP 1 Score: 137 bits (345), Expect = 4.310e-35
Identity = 71/159 (44.65%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEV 477
            T   + +KSPG P +PITL QL+ F APMLSRN KL Y  S   L + RGLGMK+   M   Y LP PQYS+D +YLTLT+Y +    ++     + + L+ +E   W FI+ ++ VTS D   A     R  QR L + +  GLL ++GKGPAT Y+V
Sbjct:  338 TPNTIVIKSPGGPVAPITLDQLKEFKAPMLSRNPKLHYVFSQMALAEERGLGMKSFETMPAEYNLPSPQYSYDDLYLTLTIYLNSEEIIRGYAPELVNELSAEELKRWDFIAKKRIVTSNDCTKAFNITSRATQRQLNRFIEIGLLEKIGKGPATRYKV 496          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A2M6Z0F2_9BACT (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ignavibacteriales bacterium CG07_land_8_20_14_0_80_59_12 TaxID=1974045 RepID=A0A2M6Z0F2_9BACT)

HSP 1 Score: 131 bits (330), Expect = 6.010e-33
Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    1 TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVR 483
            T + V V+SPG PP PITL QLQ+F APMLSRN  L +  +  ++ + +GLG+ +L   A    LPLP+YS+D  YL L LYR     ++ L A V D+L  +E+  W++++T+   T A     +  D RKAQR  K+ +  GLLR+VG   +T Y+V R
Sbjct:  336 TEDTVTVRSPGEPPPPITLEQLQSFTAPMLSRNPALHFVFARMEMAEEQGLGIGSLRDRAKELGLPLPRYSWDAPYLVLKLYRSAKSVIRELPANVLDSLNAEERRGWEYLATKTACTRAAYEQHMGVDTRKAQRHFKRFVGLGLLRKVGASTSTSYDVQR 496          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A7X7FK32_9BACT (HATPase_c_4 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7FK32_9BACT)

HSP 1 Score: 123 bits (309), Expect = 7.300e-33
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 1
Query:   22 KSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVV 480
            +SPG P SP+TL QLQ+FNAPMLSRN  L Y  S   L + RGLG+K++   A +  LPLP Y ++  YL L + R P  A QAL   VR+AL+  E+  WQ++ST     S+   +A A D+R A+R L   +  GL R+ G G  T +EVV
Sbjct:    1 RSPGRPVSPLTLEQLQSFNAPMLSRNPVLHYVFSRMGLAEERGLGLKSIRTGAQQAGLPLPTYRWEDPYLVLRVLRSPKAATQALRKDVREALSRAEQDGWQWLSTTGRAKSSQYAAAQAIDDRVARRHLNHFVQLGLARKSGAGKNTVFEVV 153          
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Match: A0A7V9REU1_9DELT (HATPase_c_4 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9REU1_9DELT)

HSP 1 Score: 125 bits (313), Expect = 1.020e-32
Identity = 66/157 (42.04%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   22 KSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRGLGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDALAPQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVGKGPATHYEVVRQGR 492
            +SPG P +PIT+ QLQ F+APMLSRN  + +A +  +L + RGLG+K++   A    LPLP YS+   Y+ LTL+R    A   LD R+ D L   E+  W ++ T+Q +T+AD   A+    R A+  L+K    GLL+  G   AT YEV R+ R
Sbjct:   41 RSPGAPVTPITIEQLQTFDAPMLSRNPVMHFAFASMQLAEERGLGLKSMKTTATAAGLPLPSYSYKAPYVVLTLHRDTKSAEANLDRRLFDQLTEAERMGWAWLVTQQVITTADYEKAIGVPNRTAKNHLRKRTELGLLKMTGAARATRYEVARRNR 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1022.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI000B9165D82.220e-4652.47hypothetical protein n=1 Tax=Methanolobus psychrot... [more]
A0A8J6T3J6_9DELT4.500e-4553.42CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1F3BIJ5_9BACT8.520e-4553.42CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7Y5DIW6_9PROT1.290e-4352.17CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A355E1M0_9BACT1.520e-3848.75CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A3C0ZH22_9BACT2.170e-3546.58CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7Z8KN04_9EURY4.310e-3544.65CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A2M6Z0F2_9BACT6.010e-3342.86CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7X7FK32_9BACT7.300e-3345.75HATPase_c_4 domain-containing protein n=1 Tax=Plan... [more]
A0A7V9REU1_9DELT1.020e-3242.04HATPase_c_4 domain-containing protein n=1 Tax=Delt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1022contigP-wetherbeei_contig1022:406..921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog314230.DSM3645_29881
PFAMsHATPase_c_4
Model size516
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-26
EggNOG OGsCOG0117@1|root,COG2865@1|root,COG0117@2|Bacteria,COG2865@2|Bacteria,2J4D0@203682|Planctomycetes
DescriptionPutative ATP-dependent DNA helicase recG C-terminal
Cds size516
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.7107565-CDS-P-wetherbeei_contig1022:405..9211683185859.7107565-CDS-P-wetherbeei_contig1022:405..921Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1022 406..921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1022.2.1prot_P-wetherbeei_contig1022.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1022 406..921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1022.2.1

>prot_P-wetherbeei_contig1022.2.1 ID=prot_P-wetherbeei_contig1022.2.1|Name=mRNA_P-wetherbeei_contig1022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
TGEAVKVKSPGMPPSPITLAQLQAFNAPMLSRNCKLQYALSGTKLVKGRG
LGMKTLGAMAGRYRLPLPQYSFDGIYLTLTLYRHPSGAVQALDARVRDAL
APQEKPAWQFISTRQTVTSADLMSALAADERKAQRVLKKLMSAGLLRRVG
KGPATHYEVVRQGRVPTVCRD*
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mRNA from alignment at P-wetherbeei_contig1022:406..921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1022.2.1 ID=mRNA_P-wetherbeei_contig1022.2.1|Name=mRNA_P-wetherbeei_contig1022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig1022:406..921+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGGCGAAGCCGTGAAGGTGAAAAGCCCTGGCATGCCGCCATCCCCGAT CACGCTTGCGCAGTTGCAGGCGTTCAATGCGCCCATGCTGAGCCGAAACT GCAAGCTGCAGTACGCCTTGAGCGGGACGAAACTGGTGAAAGGGCGGGGG CTGGGGATGAAGACGCTCGGTGCGATGGCGGGGCGGTATCGGTTGCCCCT TCCTCAATACAGCTTCGATGGAATCTACCTCACCTTGACGCTGTATCGGC ACCCGTCGGGGGCTGTCCAGGCCCTGGACGCCAGGGTGAGAGACGCCCTG GCACCCCAGGAAAAGCCGGCATGGCAGTTCATTTCGACCCGCCAAACCGT GACGAGCGCCGATCTCATGAGCGCACTGGCGGCCGATGAGCGGAAGGCGC AGAGGGTGCTCAAGAAACTCATGAGCGCCGGCCTCTTGCGGCGAGTCGGA AAGGGGCCCGCAACCCACTATGAGGTGGTGCGCCAGGGCCGAGTGCCGAC AGTTTGTCGAGATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1022:406..921+

>mRNA_P-wetherbeei_contig1022.2.1 ID=mRNA_P-wetherbeei_contig1022.2.1|Name=mRNA_P-wetherbeei_contig1022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig1022:406..921+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGGCGAAGCCGTGAAGGTGAAAAGCCCTGGCATGCCGCCATCCCCGAT
CACGCTTGCGCAGTTGCAGGCGTTCAATGCGCCCATGCTGAGCCGAAACT
GCAAGCTGCAGTACGCCTTGAGCGGGACGAAACTGGTGAAAGGGCGGGGG
CTGGGGATGAAGACGCTCGGTGCGATGGCGGGGCGGTATCGGTTGCCCCT
TCCTCAATACAGCTTCGATGGAATCTACCTCACCTTGACGCTGTATCGGC
ACCCGTCGGGGGCTGTCCAGGCCCTGGACGCCAGGGTGAGAGACGCCCTG
GCACCCCAGGAAAAGCCGGCATGGCAGTTCATTTCGACCCGCCAAACCGT
GACGAGCGCCGATCTCATGAGCGCACTGGCGGCCGATGAGCGGAAGGCGC
AGAGGGTGCTCAAGAAACTCATGAGCGCCGGCCTCTTGCGGCGAGTCGGA
AAGGGGCCCGCAACCCACTATGAGGTGGTGCGCCAGGGCCGAGTGCCGAC
AGTTTGTCGAGATTAA
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