mRNA_P-wetherbeei_contig714.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig714.1.1
Unique NamemRNA_P-wetherbeei_contig714.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig714.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig714contigP-wetherbeei_contig714:616..3181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2566
Hectar predicted targeting categoryother localisation
Exons1
Cds size1974
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.15376-UTR-P-wetherbeei_contig714:615..10881683186961.15376-UTR-P-wetherbeei_contig714:615..1088Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig714 616..1088 -
1683186961.1834688-UTR-P-wetherbeei_contig714:3062..31811683186961.1834688-UTR-P-wetherbeei_contig714:3062..3181Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig714 3063..3181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.1734083-CDS-P-wetherbeei_contig714:1088..30621683186961.1734083-CDS-P-wetherbeei_contig714:1088..3062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig714 1089..3062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig714.1.1prot_P-wetherbeei_contig714.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig714 1089..3062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig714.1.1

>prot_P-wetherbeei_contig714.1.1 ID=prot_P-wetherbeei_contig714.1.1|Name=mRNA_P-wetherbeei_contig714.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=658bp
MLSPSFSWRVKSTSLLPLPPAPRRYDSWLVCYVSRLFLSTHTAISAAVGA
GAAAPVSHSGFASPCNHSKPPNFSTLPYTPSPCASSAAKPVRTCMQKKEG
EPQKASDDIGVASGGEPGHGHDSGNISFTDAAAYRRAFGVKGGNSRPSRG
GKTPGGGGGDGAALDDIGMVGGRGRGGIRSSGVGSSASAAAVAAAVVAAA
SLASTGLQGGSGGGAGSRESAGCRGVENDCAGNNAANSAVAEDSSGGGAN
GGRDGGVPGSGADACATTNGVATTVANTLKSPVEGLASKESVPEGDGAAG
AVEASAAALSLVAAAAAVAATMLAPVASPSRAASTTTAAPSASPDGVASP
AGNGTRTYIDRNGKRQAVVERNLSRTESAAAAGAAAAPAPVPVPVPAPRT
SRPDVVRLTGETSAAATGGSVSGGGGGASSSASGAAPPRRNFRANLNIAI
AHGAALDAADAPRMGAAAAAPVLTHTEPSSPVGIRNAARRAPSRAISASN
AALEGGGAGNTATAAISSTPPDAGSQTPAKPLASPSGTRRPSLHDAVALR
MSRGSGTNRPSAVDVVGVKPAGRSAALSRLNSAASIGGGSGGVASPSSPT
SAGGGGGALTHEPVRSPASPSGSLGASGRGPRRRRDRGSPSSPVEAEGFG
GGGAAAG*
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mRNA from alignment at P-wetherbeei_contig714:616..3181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig714.1.1 ID=mRNA_P-wetherbeei_contig714.1.1|Name=mRNA_P-wetherbeei_contig714.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2566bp|location=Sequence derived from alignment at P-wetherbeei_contig714:616..3181- (Phaeothamnion wetherbeei SAG_119_79)
GACCATCGCATGGCAGGCAGGAGTTTGTCCATCTTATTCAATCTGCCGAC
ATGCAGTTGGACGCGTGCATTGGCTTACGATGGTTAATGTGTGTCATGAA
AGACTAAGTTATCTCTATAATGCTGAGTCCGAGCTTTTCTTGGCGTGTAA
AGTCTACGTCTCTTCTGCCGCTCCCTCCTGCCCCTCGACGTTATGATTCA
TGGCTTGTTTGTTACGTGTCAAGACTTTTCCTATCAACACACACAGCCAT
TAGTGCTGCCGTCGGCGCTGGCGCCGCTGCGCCAGTGTCTCACTCGGGCT
TCGCATCGCCTTGCAACCATTCAAAACCTCCAAATTTCTCAACCCTCCCA
TACACACCTTCCCCGTGTGCCTCCTCCGCCGCAAAACCCGTCCGTACATG
CATGCAGAAGAAGGAGGGCGAGCCGCAAAAGGCGAGCGACGACATCGGCG
TCGCCTCGGGCGGCGAGCCCGGGCACGGCCACGACAGCGGCAACATCAGC
TTCACCGACGCCGCCGCCTACCGCCGCGCCTTCGGTGTCAAAGGCGGAAA
CAGCCGCCCGAGCCGCGGCGGCAAGACGCCCGGCGGCGGCGGAGGCGATG
GTGCCGCGCTGGACGACATCGGAATGGTCGGCGGCCGCGGCCGCGGCGGC
ATCCGGTCCAGTGGCGTCGGCAGCAGCGCATCAGCCGCGGCGGTAGCGGC
CGCGGTGGTGGCAGCGGCTTCACTGGCGTCGACCGGATTGCAAGGCGGCA
GCGGCGGCGGCGCTGGAAGCAGAGAAAGCGCTGGCTGCCGAGGCGTTGAA
AATGATTGTGCAGGTAACAATGCAGCCAACAGCGCTGTCGCAGAGGATAG
TAGCGGCGGCGGTGCTAACGGCGGCCGTGATGGTGGTGTCCCTGGCAGCG
GCGCCGACGCTTGTGCGACCACGAACGGAGTCGCTACCACTGTAGCGAAT
ACGCTAAAATCGCCGGTGGAAGGGCTGGCATCAAAGGAAAGTGTGCCAGA
AGGCGACGGCGCGGCAGGAGCGGTGGAGGCCTCGGCAGCTGCGCTCTCGT
TGGTGGCGGCGGCGGCGGCGGTGGCGGCAACGATGCTGGCGCCGGTGGCG
TCACCTTCTAGAGCAGCCTCGACAACGACGGCGGCACCGTCAGCGTCGCC
TGACGGAGTGGCGTCTCCGGCCGGCAACGGCACGCGAACTTACATTGACC
GGAACGGGAAACGGCAGGCGGTGGTAGAGCGAAACCTTTCGCGCACCGAA
TCGGCGGCCGCGGCTGGTGCCGCTGCTGCACCGGCACCGGTGCCGGTGCC
AGTACCGGCGCCGCGGACTTCAAGGCCAGATGTGGTCCGACTGACAGGGG
AGACTTCAGCTGCAGCCACAGGAGGCAGCGTAAGCGGCGGCGGCGGTGGC
GCCTCATCTTCGGCTTCTGGTGCAGCCCCGCCGCGGCGGAACTTCCGGGC
GAACCTTAACATTGCGATTGCGCACGGCGCCGCTCTTGACGCCGCAGACG
CGCCAAGGATGGGAGCGGCGGCTGCGGCGCCCGTGCTGACCCACACGGAG
CCTTCATCACCGGTGGGGATCAGGAACGCCGCGAGGCGGGCACCGAGTAG
AGCCATCTCCGCCTCAAACGCCGCACTCGAAGGTGGAGGCGCTGGGAATA
CGGCAACGGCAGCGATATCGTCGACGCCGCCCGATGCCGGGTCTCAAACC
CCCGCAAAGCCGTTGGCTTCGCCGTCGGGCACAAGGAGGCCGAGCCTCCA
CGACGCTGTCGCGCTGCGCATGTCCCGCGGAAGCGGCACCAACCGGCCGT
CGGCAGTCGATGTCGTGGGGGTCAAACCCGCTGGGCGCTCCGCCGCCCTC
AGTCGCCTCAACTCCGCCGCGAGCATCGGCGGCGGCAGCGGCGGCGTTGC
GTCGCCATCTTCGCCAACGTCGGCAGGGGGAGGAGGCGGCGCCTTAACCC
ACGAGCCAGTACGGTCGCCGGCGTCGCCCAGCGGGTCGCTCGGAGCCAGC
GGCCGTGGCCCACGGAGGCGGCGGGACCGGGGCAGTCCAAGCTCACCAGT
GGAGGCGGAGGGCTTTGGCGGCGGCGGCGCCGCCGCCGGCTGATACCGGC
ACGATGACGCTGAAGTGGACAGCGAAAAGCGCTTGCGTTTACACAATGTC
GTCAGGAAAGCAGCGAGCCTTTGAGCCTAGCGGGAACAGCGGGCATCTCA
TGGAATAAGTGAGCCAGAGCACCACTCTGTTGGCCGCTGTTCGCCGCCGG
GTTTCAGGGCGAAGGGGAGGGAGGAGAGAGGGCCGTCTCGACGGTGATGA
TGGGCAGGCGCGCCTCTTTCATCGGCCGTGGCGGCGGCTCTGGGCGTCCC
TCACGGGTGTAAGCTCCCTGCCCGGCCGGGAAGAGAAGAGAAGAAGAAAA
GACCAGATTGGCCTCCGCCAAGCGAAATAAGAGGGGCCGCAGACGGCGGA
AGGAGCACTTGGCGGTAGCGCAAAAAGAGAGGACAGCTCTTATTGCATTG
ATGACAACACCCCTCAGGATTTAGCAAACTCAGTAGACAAAAATAACCTT
TTACTCCGATATTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig714:616..3181-

>mRNA_P-wetherbeei_contig714.1.1 ID=mRNA_P-wetherbeei_contig714.1.1|Name=mRNA_P-wetherbeei_contig714.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1974bp|location=Sequence derived from alignment at P-wetherbeei_contig714:616..3181- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAGTCCGAGCTTTTCTTGGCGTGTAAAGTCTACGTCTCTTCTGCC
GCTCCCTCCTGCCCCTCGACGTTATGATTCATGGCTTGTTTGTTACGTGT
CAAGACTTTTCCTATCAACACACACAGCCATTAGTGCTGCCGTCGGCGCT
GGCGCCGCTGCGCCAGTGTCTCACTCGGGCTTCGCATCGCCTTGCAACCA
TTCAAAACCTCCAAATTTCTCAACCCTCCCATACACACCTTCCCCGTGTG
CCTCCTCCGCCGCAAAACCCGTCCGTACATGCATGCAGAAGAAGGAGGGC
GAGCCGCAAAAGGCGAGCGACGACATCGGCGTCGCCTCGGGCGGCGAGCC
CGGGCACGGCCACGACAGCGGCAACATCAGCTTCACCGACGCCGCCGCCT
ACCGCCGCGCCTTCGGTGTCAAAGGCGGAAACAGCCGCCCGAGCCGCGGC
GGCAAGACGCCCGGCGGCGGCGGAGGCGATGGTGCCGCGCTGGACGACAT
CGGAATGGTCGGCGGCCGCGGCCGCGGCGGCATCCGGTCCAGTGGCGTCG
GCAGCAGCGCATCAGCCGCGGCGGTAGCGGCCGCGGTGGTGGCAGCGGCT
TCACTGGCGTCGACCGGATTGCAAGGCGGCAGCGGCGGCGGCGCTGGAAG
CAGAGAAAGCGCTGGCTGCCGAGGCGTTGAAAATGATTGTGCAGGTAACA
ATGCAGCCAACAGCGCTGTCGCAGAGGATAGTAGCGGCGGCGGTGCTAAC
GGCGGCCGTGATGGTGGTGTCCCTGGCAGCGGCGCCGACGCTTGTGCGAC
CACGAACGGAGTCGCTACCACTGTAGCGAATACGCTAAAATCGCCGGTGG
AAGGGCTGGCATCAAAGGAAAGTGTGCCAGAAGGCGACGGCGCGGCAGGA
GCGGTGGAGGCCTCGGCAGCTGCGCTCTCGTTGGTGGCGGCGGCGGCGGC
GGTGGCGGCAACGATGCTGGCGCCGGTGGCGTCACCTTCTAGAGCAGCCT
CGACAACGACGGCGGCACCGTCAGCGTCGCCTGACGGAGTGGCGTCTCCG
GCCGGCAACGGCACGCGAACTTACATTGACCGGAACGGGAAACGGCAGGC
GGTGGTAGAGCGAAACCTTTCGCGCACCGAATCGGCGGCCGCGGCTGGTG
CCGCTGCTGCACCGGCACCGGTGCCGGTGCCAGTACCGGCGCCGCGGACT
TCAAGGCCAGATGTGGTCCGACTGACAGGGGAGACTTCAGCTGCAGCCAC
AGGAGGCAGCGTAAGCGGCGGCGGCGGTGGCGCCTCATCTTCGGCTTCTG
GTGCAGCCCCGCCGCGGCGGAACTTCCGGGCGAACCTTAACATTGCGATT
GCGCACGGCGCCGCTCTTGACGCCGCAGACGCGCCAAGGATGGGAGCGGC
GGCTGCGGCGCCCGTGCTGACCCACACGGAGCCTTCATCACCGGTGGGGA
TCAGGAACGCCGCGAGGCGGGCACCGAGTAGAGCCATCTCCGCCTCAAAC
GCCGCACTCGAAGGTGGAGGCGCTGGGAATACGGCAACGGCAGCGATATC
GTCGACGCCGCCCGATGCCGGGTCTCAAACCCCCGCAAAGCCGTTGGCTT
CGCCGTCGGGCACAAGGAGGCCGAGCCTCCACGACGCTGTCGCGCTGCGC
ATGTCCCGCGGAAGCGGCACCAACCGGCCGTCGGCAGTCGATGTCGTGGG
GGTCAAACCCGCTGGGCGCTCCGCCGCCCTCAGTCGCCTCAACTCCGCCG
CGAGCATCGGCGGCGGCAGCGGCGGCGTTGCGTCGCCATCTTCGCCAACG
TCGGCAGGGGGAGGAGGCGGCGCCTTAACCCACGAGCCAGTACGGTCGCC
GGCGTCGCCCAGCGGGTCGCTCGGAGCCAGCGGCCGTGGCCCACGGAGGC
GGCGGGACCGGGGCAGTCCAAGCTCACCAGTGGAGGCGGAGGGCTTTGGC
GGCGGCGGCGCCGCCGCCGGCTGA
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