mRNA_P-wetherbeei_contig7139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7139.1.1
Unique NamemRNA_P-wetherbeei_contig7139.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 6.960e-59
Identity = 93/127 (73.23%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    7 GSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            G+RGAGYGLDAELAR+REA+YD +AE +A+ WIE VTGE   G F ++L+DGV++CKLVNTI PG+V+KIN S+MPFKQMENISNFLK+CRA GVAEHSLFETVDL+E KD+G+VV+C+FALGS VQ
Sbjct:    5 GARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQ 131          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 189 bits (480), Expect = 5.470e-58
Identity = 93/129 (72.09%), Postives = 108/129 (83.72%), Query Frame = 1
Query:    1 MVGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            MVG RG GYGLDAELA K  A+YDF  E  A+EW+E VTG  F G+FA SLKDG LLC+L+N I PG++K+IN S+MPFKQMENISNFLKACR  GVAE+SLFETVDLFEEKD+G+V++CLFALGS VQ
Sbjct:    1 MVG-RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQ 128          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.380e-57
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = 1
Query:    1 MVGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            MVG+RG GYGLDAELARK  A YD+  E  A+EWIE VT   F G FA +LKDG +LCKL+N I PG+VKKIN S MPFKQMENIS +LK CRA GVAEHSLFETVDL+EEKD+ +V++CLFALGST+Q
Sbjct:    1 MVGARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQ 129          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA)

HSP 1 Score: 175 bits (444), Expect = 6.960e-51
Identity = 83/128 (64.84%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    4 VGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            V +RG GYGLDA+LA+ R  +YD++ EA+ KEWIE VTGE F G F ESLKDG +LCKL+N I PGS++ IN S++PFKQMEN+S FL+ CRA GVAEH LFETVDL+E KD+G+VV C+ ALG  VQ
Sbjct:  287 VSARGGGYGLDAQLAQIRLDKYDYDLEAEVKEWIEAVTGEAFPGGFGESLKDGRILCKLINAIKPGSIRIINTSKLPFKQMENVSVFLRNCRALGVAEHDLFETVDLYELKDLGVVVNCIHALGGAVQ 414          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 7.460e-51
Identity = 87/128 (67.97%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    4 VGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
             G RG GYGLDAELA +REA YD      A+EWIE VTGE F+  F E LKDG  LC L+N I PG+V+++N S+MPFKQMEN+SNFLKACRA GVAEHSLFETVDL+E KD+G+VV+CL ALG TVQ
Sbjct:  339 TGGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQ 466          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A1V9Y836_9STRA (Calponin-homology (CH) domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y836_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.490e-42
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   25 YGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            YGLD ELA K  A+YD  AE +A+EWIE +TG      F   LKDGV+LC+L N++ P S  KI+ SQMPF+QMEN++ F++ACRA GV E  LFETVDL+E+KD+G+VV+CL ALG T+Q
Sbjct:    8 YGLDKELAVKAMAKYDAAAEDEAREWIEAITGRSIGPDFGLGLKDGVILCELANSVDPSSRIKISSSQMPFRQMENVTAFIRACRAIGVMEFDLFETVDLYEQKDLGVVVRCLHALGRTLQ 128          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A067C6M9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C6M9_SAPPC)

HSP 1 Score: 153 bits (387), Expect = 1.250e-41
Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 1
Query:   16 GAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            G+ YGLD ELA K  A+YD NAEA+A++WIE +TG+     F   LKDGV+LC+L N + P S  KI+ S MPFKQMEN++ F++ACR  GV E  LFETVDLFE+KD+G+VV+CL ALG T+Q
Sbjct:    5 GSAYGLDKELATKAMAKYDTNAEAEARDWIEAITGKAIGPDFGLGLKDGVILCELANAVDPASRIKISTSTMPFKQMENVTAFIRACRGMGVMEFDLFETVDLFEQKDLGVVVRCLHALGRTLQ 128          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 150 bits (379), Expect = 1.700e-41
Identity = 73/129 (56.59%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    4 VGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINV-SQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            V +RG GYGLDAELA++   +YD+  E +A++WIE +TG     +F E L+DGV+LC+L N I PG +++I   S+MPFK MEN+S FLKACR  GV E+ LFETVDLFE K +G+VV+CL ALG  VQ
Sbjct:    6 VKARGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCLHALGRAVQ 134          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: A0A024G6R3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6R3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 7.680e-41
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 MVGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINV-SQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            ++  RG GYGLDAELA++   +YD+  E  A++W+E +TG     +F E LKDGV+LC LVN I PG V +I V S++ F+ MEN+SNFLKACR  GV+E  LFETVDLFE KD+G+VV+CL ALG  VQ
Sbjct:    5 IIKVRGGGYGLDAELAQRATERYDYGMEKDAQDWVESITGLQIGDSFGEGLKDGVILCNLVNKIHPGIVPRIEVKSKIKFRLMENVSNFLKACRTIGVSEFDLFETVDLFELKDLGLVVRCLHALGRAVQ 134          
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Match: K3WZS5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD)

HSP 1 Score: 150 bits (380), Expect = 1.610e-40
Identity = 76/129 (58.91%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    4 VGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAESLKDGVLLCKLVNTISPGSVKKINV-SQMPFKQMENISNFLKACRACGVAEHSLFETVDLFEEKDMGIVVQCLFALGSTVQ 387
            V +RG GYGLDAELAR+   +YD+  E +A+ WIE V+G      F E L+DGV+LC LVN I P  VK+I   S+MPFK MEN+S+FL+ACR  GV+E  LFETVDLFE KD+G VV+C+FALG  VQ
Sbjct:    6 VQARGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFETVDLFELKDLGHVVRCIFALGRAVQ 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ16_ECTSI6.960e-5973.23Calponin-homology (CH) domain-containing protein n... [more]
A0A835ZHQ8_9STRA5.470e-5872.09Calponin homology domain-containing protein n=1 Ta... [more]
A0A836CGB8_9STRA1.380e-5770.54Calponin homology domain-containing protein n=1 Ta... [more]
A0A7R9YD67_9STRA6.960e-5164.84Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6H5L3X7_9PHAE7.460e-5167.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9Y836_9STRA1.490e-4258.68Calponin-homology (CH) domain-containing protein (... [more]
A0A067C6M9_SAPPC1.250e-4158.87Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4CAP3_PYTIN1.700e-4156.59Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024G6R3_9STRA7.680e-4156.92Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
K3WZS5_GLOUD1.610e-4058.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7139contigP-wetherbeei_contig7139:9..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJ16
Preferred nameSCP1
PFAMsCH
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons1
Evalue1.14e-59
EggNOG OGsCOG5199@1|root,KOG2046@2759|Eukaryota
Descriptionactin binding
Cds size387
COG categoryZ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.0341885-CDS-P-wetherbeei_contig7139:8..3951683186961.0341885-CDS-P-wetherbeei_contig7139:8..395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7139 9..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7139.1.1prot_P-wetherbeei_contig7139.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7139 9..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7139.1.1

>prot_P-wetherbeei_contig7139.1.1 ID=prot_P-wetherbeei_contig7139.1.1|Name=mRNA_P-wetherbeei_contig7139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MVGSRGAGYGLDAELARKREAQYDFNAEAKAKEWIEQVTGEVFSGAFAES
LKDGVLLCKLVNTISPGSVKKINVSQMPFKQMENISNFLKACRACGVAEH
SLFETVDLFEEKDMGIVVQCLFALGSTVQ
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mRNA from alignment at P-wetherbeei_contig7139:9..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7139.1.1 ID=mRNA_P-wetherbeei_contig7139.1.1|Name=mRNA_P-wetherbeei_contig7139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig7139:9..395- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGGATCCCGCGGTGCCGGCTACGGCCTGGACGCCGAGCTGGCCCG CAAGCGTGAGGCGCAGTATGACTTCAACGCCGAGGCCAAGGCAAAAGAGT GGATCGAGCAGGTGACCGGCGAGGTCTTCTCCGGCGCCTTCGCCGAGAGC CTGAAGGACGGCGTCCTGCTCTGCAAGCTGGTGAACACCATCTCCCCCGG CTCAGTCAAGAAGATCAACGTCTCTCAGATGCCCTTCAAGCAGATGGAGA ACATAAGCAACTTCCTCAAGGCGTGCCGCGCCTGCGGCGTCGCCGAGCAT TCGCTCTTCGAGACTGTCGACCTCTTCGAGGAGAAGGACATGGGTATCGT CGTCCAGTGCCTCTTCGCGCTCGGCTCGACGGTTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7139:9..395-

>mRNA_P-wetherbeei_contig7139.1.1 ID=mRNA_P-wetherbeei_contig7139.1.1|Name=mRNA_P-wetherbeei_contig7139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig7139:9..395- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGGATCCCGCGGTGCCGGCTACGGCCTGGACGCCGAGCTGGCCCG
CAAGCGTGAGGCGCAGTATGACTTCAACGCCGAGGCCAAGGCAAAAGAGT
GGATCGAGCAGGTGACCGGCGAGGTCTTCTCCGGCGCCTTCGCCGAGAGC
CTGAAGGACGGCGTCCTGCTCTGCAAGCTGGTGAACACCATCTCCCCCGG
CTCAGTCAAGAAGATCAACGTCTCTCAGATGCCCTTCAAGCAGATGGAGA
ACATAAGCAACTTCCTCAAGGCGTGCCGCGCCTGCGGCGTCGCCGAGCAT
TCGCTCTTCGAGACTGTCGACCTCTTCGAGGAGAAGGACATGGGTATCGT
CGTCCAGTGCCTCTTCGCGCTCGGCTCGACGGTTCAG
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