mRNA_P-wetherbeei_contig7136.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7136.1.1
Unique NamemRNA_P-wetherbeei_contig7136.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: D7G910_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G910_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.010e-32
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  160 EPWLIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTVE-CRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMT-EEQERALLARPTKPSIFSKMRR 519
            EP L+EF G  CDHC+ M+PL  RL  E ++ V++ +VWE ++ F LM + D    CRGLPFFYNRR+ Q ICGAT+W NF+NW L + CK  +PP MT E+QE A   +  +  +FS++++
Sbjct:   47 EPHLLEFHGEQCDHCEAMKPLFRRLFLETRLVVKRHMVWEDTANFRLMSIYDLKSRCRGLPFFYNRRTGQTICGATTWSNFKNWALDRNCKSSSPPRMTGEQQEDAREKKLEQDPLFSRLKK 168          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: M1UWJ6_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UWJ6_CYAM1)

HSP 1 Score: 109 bits (273), Expect = 2.160e-26
Identity = 55/139 (39.57%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  169 LIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLD-TVECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQERALLARPTKPSIFSKMRRRIEKVKEQGQKEMTKRVEQKD 582
            L+EF G  CDHC  MEPL+ERL+KE  VP+ +F VW       L+Q LD    C G+PFFYN+R++  ICGAT++ N +NW LG+  + F PP    + E  +L             + +E+V++Q  ++M +R+ +K+
Sbjct:   12 LLEFYGIECDHCVDMEPLMERLQKELGVPIRRFEVWYSDDNLRLLQKLDKNGSCGGVPFFYNKRTKGWICGATTYENLKNWALGRPHQRFLPPPKDSKGENVIL-------------KFLERVQKQAMEKMQQRMNEKN 137          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: A0A7S3F257_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F257_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 2.970e-26
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  139 IYPADPNE-----PWLIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTVECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPP 444
            IY   P +     P+LI+FTG   D+C +MEPL ERL+ E  V +  F VW G+   DL+Q LD   C G+PFFYN++SR+ ICGAT++ N + W L + C+ F PP
Sbjct:   44 IYELTPEQLAGGKPYLIQFTGKGDDYCKSMEPLKERLKDELGVEIRCFEVWYGTQNLDLLQKLDRGRCGGVPFFYNKKSRRFICGATTYANLKAWALCQPCEPFLPP 150          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: R1F0R1_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F0R1_EMIHU)

HSP 1 Score: 107 bits (268), Expect = 4.340e-26
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  169 LIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTVECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQER 468
            LI+F G   D+C  MEPL E+L  E  V +  F VW  S   +L+Q LD   C G+PFFYN+RS+Q ICGAT++ N + W LGK C+ FAPP   E+  R
Sbjct:   18 LIQFRGKGDDYCAFMEPLTEQLCNELGVKIRCFEVWHDSRNLELLQRLDAGRCNGVPFFYNKRSKQFICGATTYENLKTWALGKTCEEFAPPPELEKLAR 117          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: A0A7J7IL75_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IL75_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 1.410e-24
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  151 DPNEPWLIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDT-VECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQERALLARPTKPSIFSKMRRRIEKVKEQGQKEMTKRVEQKD 582
            D +   L+EF G  CDHC  MEPL+ERL+KE  +P+ +F VW       L+Q LD    C G+PFFYN+R++  ICGAT++ N ++W LG+  + F PP    + E             +K+ +  E++++Q  ++M +R+ +K+
Sbjct:    6 DVSRSHLLEFYGIECDHCVDMEPLMERLQKEIGLPIRRFEVWYSDDNLRLLQKLDKGSSCGGVPFFYNKRTKGWICGATTYENLKSWALGRPHQRFLPPPKETKGE-------------NKIMQFFERIQKQAMEKMQQRMNEKN 137          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: A0A0M0JSC9_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSC9_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 3.410e-24
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  121 LAFN--RGIYPADPN----EPWLIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTVECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPP 444
            LAF   + I+  +P     +P+LI+F G   D+C  MEPL ++L +E  V +  F VW  S   +L+Q LD   C G+PFFYN+RSR+ ICGAT++ N +NW + + C+ F PP
Sbjct:   47 LAFQVTKPIFELEPEAYEGKPYLIQFKGKGDDYCAQMEPLKDQLREELGVEIRCFEVWYNSKNLELLQRLDRGRCGGVPFFYNKRSRRYICGATTYANLKNWAMCEPCEPFLPP 160          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: F2HIC1_9CRYP (Uncharacterized protein n=1 Tax=Cryptomonas paramecium TaxID=2898 RepID=F2HIC1_9CRYP)

HSP 1 Score: 102 bits (253), Expect = 5.100e-24
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  169 LIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLD-TVECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQERALLARPTKPSIFSKMRRRIEKVKEQGQKEMTKRVEQKDAK 588
            L EF G  CDHC  ME LV++LEKE  +PV +F VW       L+Q  D    C G+PFFYN+++R  ICGAT++ N + W LGK  + F PP   E            P     ++  ++K++ +G K M KR   K +K
Sbjct:   10 LFEFYGIECDHCIEMEFLVDQLEKEISMPVRRFEVWYNDENVKLLQKFDKNGMCGGVPFFYNKKTRSWICGATTYPNLKAWALGKPHEKFLPPPKNE------------PEYMQGLKGWLDKLRNEGIKRMKKRANTKTSK 138          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: A0A7S0LX73_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LX73_9CRYP)

HSP 1 Score: 101 bits (252), Expect = 7.600e-24
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  169 LIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTV-ECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQERALLARPTKPSIFSKMRRRIEKVKEQGQKEMTKRVE 573
            L+EF G  CDHC  MEPL++++EKE  +P+ +F VW       L+Q LD    C G+PFFYN+++R  ICGAT++ N + W  GK  + F PP   E +                +R  +E+++++G K M KR E
Sbjct:   10 LLEFYGIECDHCVDMEPLMDQIEKESGLPIRRFEVWYNEENIRLLQKLDKGGACGGVPFFYNKKTRSWICGATTYPNLKAWAYGKPHERFLPPPKDETE------------YIQGIRGWLERLRDEGVKRMQKRTE 133          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: M2W7T7_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7T7_GALSU)

HSP 1 Score: 101 bits (252), Expect = 2.900e-23
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  160 EPWLIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTVE-CRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQE 465
            EP+L+EF G  CDHC  M PLV ++EKE  V + +  VW       L+Q LD+   C G+PFFYNR SRQ ICGAT+++N  +W   + C  F PP   + QE
Sbjct:   12 EPYLLEFHGTECDHCVDMLPLVHKIEKELGVTMLKLEVWHNPRNNRLLQKLDSSSVCGGVPFFYNRISRQFICGATTYKNLLSWAKSEGCAPFLPPETAQGQE 114          
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Match: Q9AW19_GUITH (Uncharacterized protein n=1 Tax=Guillardia theta TaxID=55529 RepID=Q9AW19_GUITH)

HSP 1 Score: 99.8 bits (247), Expect = 4.110e-23
Identity = 50/136 (36.76%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  169 LIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLLDTV-ECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQERALLARPTKPSIFSKMRRRIEKVKEQGQKEMTKRVE 573
            LIEF G  CDHC  MEPL+E++E++  +P+ ++ VW       L+Q LD    C G+PFFYN+++R  ICGAT++ N + W +GK  + F PP   + +                 R   +K++E+G K M +R E
Sbjct:   10 LIEFYGIECDHCVDMEPLMEQIERDTGLPIRRYEVWYNEENLRLLQKLDKGGSCGGVPFFYNKKTRSWICGATTYPNLKAWAIGKPHERFLPPPKDDSE------------YIQGFRGWFDKIREEGIKRMQQRTE 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G910_ECTSI1.010e-3248.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M1UWJ6_CYAM12.160e-2639.57Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A7S3F257_9EUKA2.970e-2646.73Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
R1F0R1_EMIHU4.340e-2649.00Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7J7IL75_9RHOD1.410e-2436.55Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A0M0JSC9_9EUKA3.410e-2442.98Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
F2HIC1_9CRYP5.100e-2439.01Uncharacterized protein n=1 Tax=Cryptomonas parame... [more]
A0A7S0LX73_9CRYP7.600e-2438.24Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
M2W7T7_GALSU2.900e-2346.60Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
Q9AW19_GUITH4.110e-2336.76Uncharacterized protein n=1 Tax=Guillardia theta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7136contigP-wetherbeei_contig7136:41..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G910
Model size658
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue8.29e-34
EggNOG OGs2E3VE@1|root,2SAVA@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_002350.1
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.7680826-UTR-P-wetherbeei_contig7136:40..951683186960.7680826-UTR-P-wetherbeei_contig7136:40..95Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7136 41..95 -
1683186960.8084214-UTR-P-wetherbeei_contig7136:812..8241683186960.8084214-UTR-P-wetherbeei_contig7136:812..824Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7136 813..824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.7818048-CDS-P-wetherbeei_contig7136:95..2911683186960.7818048-CDS-P-wetherbeei_contig7136:95..291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7136 96..291 -
1683186960.7959485-CDS-P-wetherbeei_contig7136:417..8121683186960.7959485-CDS-P-wetherbeei_contig7136:417..812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7136 418..812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7136.1.1prot_P-wetherbeei_contig7136.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7136 96..812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7136.1.1

>prot_P-wetherbeei_contig7136.1.1 ID=prot_P-wetherbeei_contig7136.1.1|Name=mRNA_P-wetherbeei_contig7136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
MPERSFASLLAGAIACLALIGAVPAEASRWHSQWARLAFNRGIYPADPNE
PWLIEFTGYNCDHCDTMEPLVERLEKEFKVPVEQFIVWEGSSKFDLMQLL
DTVECRGLPFFYNRRSRQAICGATSWRNFRNWGLGKKCKVFAPPIMTEEQ
ERALLARPTKPSIFSKMRRRIEKVKEQGQKEMTKRVEQKDAKGATE*
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mRNA from alignment at P-wetherbeei_contig7136:41..824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7136.1.1 ID=mRNA_P-wetherbeei_contig7136.1.1|Name=mRNA_P-wetherbeei_contig7136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=784bp|location=Sequence derived from alignment at P-wetherbeei_contig7136:41..824- (Phaeothamnion wetherbeei SAG_119_79)
ATCTTTGCTGTCATGCCAGAACGCTCTTTCGCATCATTGCTGGCTGGGGC CATCGCCTGCCTGGCCCTCATCGGCGCCGTGCCGGCGGAGGCGTCGCGGT GGCACTCGCAGTGGGCGCGACTCGCCTTCAACCGCGGCATCTACCCGGCG GATCCGAACGAACCCTGGCTGATTGAGTTTACGGGTTACAATTGCGACCA CTGCGACACGATGGAGCCTCTGGTGGAGCGGCTGGAGAAGGAGTTCAAGG TCCCAGTGGAGCAGTTCATCGTGTGGGAGGGCTCCTCGAAGTTCGACCTG ATGCAGCTCCTCGACACGGTGGAGTGCAGAGGGCTGCCCTTCTTCTACAA CCGTCGCTCGCGCCAGGCGATATGCGGTGCGACTTCGTGGCGCAACTTTC GCAATTGGTGAGAGTGTATGACTTCATTTTCCTTTTCTTCCCAATTGTTG CAGACGCGGCCTTCTCGAATATATTTGTCCATTTCCTTCATGGTTTTCTC TTCTTTCCTGCTGTATGAACGTGCGATCTCCAGGGGGCTGGGAAAGAAGT GCAAGGTCTTTGCGCCGCCGATCATGACAGAGGAGCAGGAGCGGGCGCTG CTCGCGCGGCCAACGAAGCCGAGCATCTTCTCCAAGATGCGGCGGCGAAT CGAGAAAGTGAAGGAACAGGGGCAGAAGGAGATGACGAAGCGCGTTGAGC AAAAAGACGCCAAGGGAGCGACAGAGTGAAGCTGACCGCCCTTCAGTAAT CAAAAATTCCTTGCAAATATGGTGTGTATTCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7136:41..824-

>mRNA_P-wetherbeei_contig7136.1.1 ID=mRNA_P-wetherbeei_contig7136.1.1|Name=mRNA_P-wetherbeei_contig7136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig7136:41..824- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGAACGCTCTTTCGCATCATTGCTGGCTGGGGCCATCGCCTGCCT
GGCCCTCATCGGCGCCGTGCCGGCGGAGGCGTCGCGGTGGCACTCGCAGT
GGGCGCGACTCGCCTTCAACCGCGGCATCTACCCGGCGGATCCGAACGAA
CCCTGGCTGATTGAGTTTACGGGTTACAATTGCGACCACTGCGACACGAT
GGAGCCTCTGGTGGAGCGGCTGGAGAAGGAGTTCAAGGTCCCAGTGGAGC
AGTTCATCGTGTGGGAGGGCTCCTCGAAGTTCGACCTGATGCAGCTCCTC
GACACGGTGGAGTGCAGAGGGCTGCCCTTCTTCTACAACCGTCGCTCGCG
CCAGGCGATATGCGGTGCGACTTCGTGGCGCAACTTTCGCAATTGGGGGC
TGGGAAAGAAGTGCAAGGTCTTTGCGCCGCCGATCATGACAGAGGAGCAG
GAGCGGGCGCTGCTCGCGCGGCCAACGAAGCCGAGCATCTTCTCCAAGAT
GCGGCGGCGAATCGAGAAAGTGAAGGAACAGGGGCAGAAGGAGATGACGA
AGCGCGTTGAGCAAAAAGACGCCAAGGGAGCGACAGAGTGA
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