mRNA_P-wetherbeei_contig7128.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A0G4J6S4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6S4_PLABS) HSP 1 Score: 84.0 bits (206), Expect = 1.040e-15 Identity = 66/168 (39.29%), Postives = 88/168 (52.38%), Query Frame = 1
Query: 1 AISASGTATELRATLDGARYVSPPDWNAAARGFDRVNARVRAQNATGLAIGGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVT-GVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLVS 501
A++A G T LRA L YV P WN G D V V + ++ +NVT VD P++T +++T ED PV VT GV + V GVV +V V +G++ + A+ GLYV SS I+F+A + A NAAL L YT A DWSG D L V+
Sbjct: 293 ALTAWGNQTMLRARLSHVVYVPAPAWNTWQDGLDHVTLAVTDGHGASGSL-----TVDVNVTYVDQAPVVTVAASLTTNEDAPVRVTIGVSDASVAQSSGNGVVGQVVVQVGNGSLSLRATA-GLYVRRQTSSTIQFEADMTAMNAALDPLTYTPAADWSGVDTLHVA 454
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: D7G6U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 5.020e-15 Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 1
Query: 16 GTATELRATLDGARYVSPPDWNAAARG-FDRVNARVRAQNAT--GLAIGGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAH--GNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSG 480
GT E+ A L Y +PPDWN+ + F+ ++ V Q++ G G + + ++DPP++ GPS TA E R + G+ VSDVDA +T G V+EV V+AA NV + A + GL++ ++ FQ ++ N ALAGL + GA ++SG
Sbjct: 93 GTQDEINAALLNVWYSAPPDWNSLGQDTFEALSVLVDEQDSAQGGDPYPGVPRTLIVLIAPINDPPLLRGPSEFTAVEGRTTVLGGIEVSDVDAQDTTGSVLEVTVSAAEKGSNVELGAKL-GLFIKNSSDESKTFQGSVTNINKALAGLTFRGAFEFSG 251
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A6H5KBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 6.840e-15 Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 16 GTATELRATLDGARYVSPPDWNAAARG-FDRVNARVRAQNAT--GLAIGGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAH-GNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSG 480
GT E+ A L Y +PPDWN+ + F+ ++ V Q++ G G + VT V+DPP++ GPS TA E R + G++V DVDA +T G V+EV V+AA G+ V + GL++ ++ FQ ++ N ALAGL + GA ++SG
Sbjct: 76 GTQDEINAALLNVWYSAPPDWNSLGQDTFETLSVLVDEQDSAQGGDPYPGVPRTLVVLVTPVNDPPLLRGPSEFTAVEGRTTVLGGIKVFDVDAQDTAGSVLEVTVSAAEKGSSVELGAKLGLFIKNSSDESKTFQGSVTNINNALAGLTFRGAFEFSG 234
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A7S1CA18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA18_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.570e-6 Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 1
Query: 22 ATELRATLDGARYVSPPDWNAAARGFDRVNARVRAQNATGLAIGGADAAAH---INVTAVDDPPIITGPS--AVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVETNS---------------SHIRFQAALLAANAALAGLIYTGAKDWSGRD 486
A L A L RY DW+ G D ++ V Q +G GGA AA+ I VT ++D P I P+ +V ED + G+ VSDVDAD P +E ++ A G +++ +S G+ VV + + QA L AALAGL Y GA DW+G D
Sbjct: 568 AARLNAALAAVRYTPERDWH----GADTLDVVVDDQGHSGA--GGALAASTSVAITVTPINDAPTIATPAPYSVVLDEDGEAVLRGLSVSDVDAD--PNRAMEATLSCARGVLLLSSS-EGVRVVVADGGGGSISAADAAASGFASATIQATLADMQAALAGLHYLGASDWTGWD 733
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A2S8Z1A3_9PSED (Adhesin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2S8Z1A3_9PSED) HSP 1 Score: 57.4 bits (137), Expect = 1.710e-6 Identity = 45/145 (31.03%), Postives = 66/145 (45.52%), Query Frame = 1
Query: 115 RVRAQNATGLAIGGADAAAHINVTAVD--------------DPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGV---VVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
RVR + A+G INVT D D P+ P ED P+A+TG+ VSD DAD P + + + +N HG + + + G+ V +NS+ + L N ALA L+Y G +++G D L V
Sbjct: 1949 RVRIDSDADTAVG------QINVTLADAGTGIADAGFVEQNDAPVNNLPGTQNGQEDIPLAITGISVSDADADRDPAINDRTLTITLNVLHGTLSLSTTPSGVTVTGSNSASMTLTGNLADLNLALANLMYLGNANFNGTDTLTV 2087
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A5P1DSW4_9PSED (DUF4347 domain-containing protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A5P1DSW4_9PSED) HSP 1 Score: 56.6 bits (135), Expect = 3.160e-6 Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 190 VDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVV---VEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
++D P+ T P ED P+A++G+ VSD+DA+ P V +EV +N HG + + G+ V ++++ + NAALAG+ Y G D++G D L V
Sbjct: 2016 LNDAPVNTLPGFQQGREDTPLAISGISVSDIDAERDPVVASRAIEVNLNVLHGTLTLTGPTTGVTVTGAGTTNLVLLGRIADINAALAGVSYLGNLDFNGVDFLEV 2121
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: UPI000EAA6ACA (VCBS domain-containing protein n=1 Tax=Pseudomonas sp. DY-1 TaxID=1755504 RepID=UPI000EAA6ACA) HSP 1 Score: 56.6 bits (135), Expect = 3.160e-6 Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 190 VDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVV---VEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
++D P+ T P ED P+A++G+ VSD+DA+ P V +EV +N HG + + G+ V ++++ + NAALAG+ Y G D++G D L V
Sbjct: 2018 LNDAPVNTLPGFQQGREDTPLAISGISVSDIDAERDPVVASRAIEVNLNVLHGTLTLTGPTTGVTVTGAGTTNLVLLGRIADINAALAGVSYLGNLDFNGVDFLEV 2123
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: UPI000A5E8119 (VCBS domain-containing protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI000A5E8119) HSP 1 Score: 55.8 bits (133), Expect = 5.810e-6 Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 1
Query: 115 RVRAQNATGLAIG--------GADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
RVR + G A+G G+ A A ++D P+ P ED P+A+ G+RVSDVD ++++ ++ HG + + A G+ VV S + L A N ALA L+Y G +++G D L V
Sbjct: 1951 RVRIDSDAGSALGRIDINLGEGSSANADAGFVQLNDAPVNQLPGTQNGFEDTPLAIGGIRVSDVDIGNG---IMDITLSVLHGTLSLSALPAGVSVVGNGSGTLSLSGNLTALNQALANLVYLGNANFNGIDTLTV 2083
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: UPI0008396B73 (DUF4347 domain-containing protein n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=UPI0008396B73) HSP 1 Score: 55.5 bits (132), Expect = 7.880e-6 Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 130 NATGLAIGGADAAAH---INVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVE--TNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLVS 501
+A G GGA A+ +N+TA++D P++T P A + ED ++++G+ V+D D+ V+V + A+G + + AS+ GL V S+ + N AL GL Y G D++G D+L+VS
Sbjct: 2159 SAAGQGTGGALTASGSVTVNITAINDAPVVTVPGARSVNEDTGLSLSGLGVADADSSANA---VDVTLKVANGTLSL-ASLSGLTVTSGSNGSAAMVLHGTAADINTALGGLTYQGRTDFNGSDQLVVS 2283
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A8G0SMA5_9PSED (VCBS domain-containing protein n=3 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A8G0SMA5_9PSED) HSP 1 Score: 54.3 bits (129), Expect = 1.970e-5 Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 139 GLAIG-GADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGV---VVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLVS 501
G+ +G G+ A A+ ++D P+ + P + ED P+A+ G+RVSD+DA+ P V ++V + HG + + + + V ++ + + NAALAGL Y G +++G D L V+
Sbjct: 1998 GVTLGEGSTAQANSGYVELNDAPVNSLPGLQSGLEDVPLAIPGIRVSDIDAERDPDVNGRAIQVTLTVTHGTLSLTGTTSSVTVGGNGTATLVLLGRIADINAALAGLSYLGNLNFNGNDFLQVT 2122 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7128.2.1 >prot_P-wetherbeei_contig7128.2.1 ID=prot_P-wetherbeei_contig7128.2.1|Name=mRNA_P-wetherbeei_contig7128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp AISASGTATELRATLDGARYVSPPDWNAAARGFDRVNARVRAQNATGLAIback to top mRNA from alignment at P-wetherbeei_contig7128:2539..3039+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7128.2.1 ID=mRNA_P-wetherbeei_contig7128.2.1|Name=mRNA_P-wetherbeei_contig7128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig7128:2539..3039+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7128:2539..3039+ >mRNA_P-wetherbeei_contig7128.2.1 ID=mRNA_P-wetherbeei_contig7128.2.1|Name=mRNA_P-wetherbeei_contig7128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig7128:2539..3039+ (Phaeothamnion wetherbeei SAG_119_79)back to top |