mRNA_P-wetherbeei_contig7121.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7121.4.1
Unique NamemRNA_P-wetherbeei_contig7121.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: A0A2V9D5A6_9BACT (3-methyladenine DNA glycosylase 2 (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9D5A6_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 6.730e-24
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            G+GEWTAQYIAMRA+RE DAFP+ DIAL+R  G+    R  ++ L+ RAE+WRPWRAYAA HLW
Sbjct:   39 GVGEWTAQYIAMRALREMDAFPASDIALLRGAGIMDGARATSASLLRRAESWRPWRAYAAQHLW 102          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: UPI002012B69D (helix-turn-helix domain-containing protein n=2 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI002012B69D)

HSP 1 Score: 100 bits (248), Expect = 3.620e-23
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIAMR MRE DAFP GDI LMRAL   +  R   ++L++RAEAWRPWRAYAALHLW
Sbjct:  431 GIGEWTAQYIAMREMREPDAFPHGDIGLMRALADEQGVRPTPAELLARAEAWRPWRAYAALHLW 494          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: A0A7Y2ALA5_9BACT (3-methyladenine DNA glycosylase 2 n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2ALA5_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 3.760e-23
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            G+GEWTAQYIAMR +RESDAF + D+AL R L V+K  R    QL++RAEAWRPWRAYA LH W
Sbjct:    6 GVGEWTAQYIAMRVLRESDAFLASDVALQRILAVDKV-RPDRGQLLARAEAWRPWRAYATLHFW 68          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: A0A0Q7W8E4_9CAUL (3-methyladenine DNA glycosylase 2 n=11 Tax=Caulobacterales TaxID=204458 RepID=A0A0Q7W8E4_9CAUL)

HSP 1 Score: 99.8 bits (247), Expect = 4.710e-23
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIAMR +RE DAFP+ D+ALMRAL      R  A QL++RAEAWRPWRAYAALHLW
Sbjct:  416 GIGEWTAQYIAMRQLREPDAFPAADVALMRALADADGVRPTADQLLARAEAWRPWRAYAALHLW 479          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: UPI001B02AC1B (DNA-3-methyladenine glycosylase 2 family protein n=1 Tax=Caulobacter sp. TaxID=78 RepID=UPI001B02AC1B)

HSP 1 Score: 99.8 bits (247), Expect = 4.780e-23
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIAMR +RE DAFP+ D+ALMRAL      R  A QL++RAEAWRPWRAYAALHLW
Sbjct:  420 GIGEWTAQYIAMRQLREPDAFPAADVALMRALADADGVRPTADQLLARAEAWRPWRAYAALHLW 483          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: B0SWZ0_CAUSK (Transcriptional regulator, AraC family n=1 Tax=Caulobacter sp. (strain K31) TaxID=366602 RepID=B0SWZ0_CAUSK)

HSP 1 Score: 99.4 bits (246), Expect = 6.670e-23
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIAMR +RE DAFP+ D+ALMRAL      R  A QL++RAEAWRPWRAYAALHLW
Sbjct:  424 GIGEWTAQYIAMRQLREPDAFPAADVALMRALADVDGVRPTAEQLLTRAEAWRPWRAYAALHLW 487          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: A0A2D7ZL84_9CAUL (3-methyladenine DNA glycosylase 2 n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A2D7ZL84_9CAUL)

HSP 1 Score: 99.4 bits (246), Expect = 6.670e-23
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIA+R MRE DAFP GDI LMRA+     +R  A++L++RAEAWRPWRAY ALHLW
Sbjct:  418 GIGEWTAQYIALRQMREPDAFPHGDIGLMRAMAGPDGQRPSAAELLARAEAWRPWRAYGALHLW 481          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: A0A0Q8FMR8_9CAUL (3-methyladenine DNA glycosylase 2 n=3 Tax=Bacteria TaxID=2 RepID=A0A0Q8FMR8_9CAUL)

HSP 1 Score: 99.0 bits (245), Expect = 9.170e-23
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIAMR +RE DAFP+ D+ALMRAL      R  A QL++RAEAWRPWRAYAALHLW
Sbjct:  424 GIGEWTAQYIAMRQLREPDAFPAADVALMRALTDADGVRPTAEQLLARAEAWRPWRAYAALHLW 487          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: A0A1H1KHK4_9HYPH (DNA-3-methyladenine glycosylase II n=3 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A1H1KHK4_9HYPH)

HSP 1 Score: 98.2 bits (243), Expect = 1.740e-22
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIGEWTAQYIAMR +RE DAFP+ DI LMRAL      R G ++L++RAE WRPWRAYAALHLW
Sbjct:  420 GIGEWTAQYIAMRELREPDAFPAADIGLMRALTDPSGRRPGPAELVARAETWRPWRAYAALHLW 483          
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Match: UPI00036D8D7A (hypothetical protein n=1 Tax=Thiomonas sp. FB-6 TaxID=1158291 RepID=UPI00036D8D7A)

HSP 1 Score: 96.3 bits (238), Expect = 1.840e-22
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    1 GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAEAWRPWRAYAALHLW 192
            GIG+WTAQYIAMRA+R+ DAFP+GD+ L RA+ V+   R GA +L++RA AWRPWRAYAALHLW
Sbjct:  242 GIGDWTAQYIAMRALRQPDAFPAGDVGLARAVAVDG-RRPGAPELLARAAAWRPWRAYAALHLW 304          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7121.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V9D5A6_9BACT6.730e-2465.633-methyladenine DNA glycosylase 2 (Fragment) n=1 T... [more]
UPI002012B69D3.620e-2373.44helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A7Y2ALA5_9BACT3.760e-2367.193-methyladenine DNA glycosylase 2 n=1 Tax=Pirellul... [more]
A0A0Q7W8E4_9CAUL4.710e-2373.443-methyladenine DNA glycosylase 2 n=11 Tax=Cauloba... [more]
UPI001B02AC1B4.780e-2373.44DNA-3-methyladenine glycosylase 2 family protein n... [more]
B0SWZ0_CAUSK6.670e-2373.44Transcriptional regulator, AraC family n=1 Tax=Cau... [more]
A0A2D7ZL84_9CAUL6.670e-2370.313-methyladenine DNA glycosylase 2 n=1 Tax=Phenylob... [more]
A0A0Q8FMR8_9CAUL9.170e-2373.443-methyladenine DNA glycosylase 2 n=3 Tax=Bacteria... [more]
A0A1H1KHK4_9HYPH1.740e-2270.31DNA-3-methyladenine glycosylase II n=3 Tax=unclass... [more]
UPI00036D8D7A1.840e-2268.75hypothetical protein n=1 Tax=Thiomonas sp. FB-6 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7121contigP-wetherbeei_contig7121:2902..3093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog366602.Caul_4073
PFAMsAda_Zn_binding,AlkA_N,HTH_18,HhH-GPD
Model size192
Max annot lvl204458|Caulobacterales
KEGG koko:K13529
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-23
EggNOG OGsCOG0122@1|root,COG2169@1|root,COG0122@2|Bacteria,COG2169@2|Bacteria,1MX9C@1224|Proteobacteria,2TVJ7@28211|Alphaproteobacteria,2KK87@204458|Caulobacterales
EC3.2.2.21
DescriptionAlkA N-terminal domain
Cds size192
COG categoryK
BRITEko00000,ko00001,ko01000,ko03000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.7831264-CDS-P-wetherbeei_contig7121:2901..30931683186959.7831264-CDS-P-wetherbeei_contig7121:2901..3093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7121 2902..3093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7121.4.1prot_P-wetherbeei_contig7121.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7121 2902..3093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7121.4.1

>prot_P-wetherbeei_contig7121.4.1 ID=prot_P-wetherbeei_contig7121.4.1|Name=mRNA_P-wetherbeei_contig7121.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
GIGEWTAQYIAMRAMRESDAFPSGDIALMRALGVNKTERTGASQLISRAE
AWRPWRAYAALHLW
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mRNA from alignment at P-wetherbeei_contig7121:2902..3093-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7121.4.1 ID=mRNA_P-wetherbeei_contig7121.4.1|Name=mRNA_P-wetherbeei_contig7121.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig7121:2902..3093- (Phaeothamnion wetherbeei SAG_119_79)
GGCATAGGAGAATGGACGGCGCAATATATTGCCATGCGGGCGATGCGCGA AAGCGATGCATTTCCCAGCGGGGATATTGCATTGATGCGGGCGCTAGGCG TAAACAAAACAGAACGGACTGGCGCATCGCAGTTGATATCGCGCGCCGAG GCCTGGCGGCCATGGCGCGCCTATGCGGCGCTGCATTTGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7121:2902..3093-

>mRNA_P-wetherbeei_contig7121.4.1 ID=mRNA_P-wetherbeei_contig7121.4.1|Name=mRNA_P-wetherbeei_contig7121.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig7121:2902..3093- (Phaeothamnion wetherbeei SAG_119_79)
GGCATAGGAGAATGGACGGCGCAATATATTGCCATGCGGGCGATGCGCGA
AAGCGATGCATTTCCCAGCGGGGATATTGCATTGATGCGGGCGCTAGGCG
TAAACAAAACAGAACGGACTGGCGCATCGCAGTTGATATCGCGCGCCGAG
GCCTGGCGGCCATGGCGCGCCTATGCGGCGCTGCATTTGTGG
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