mRNA_P-wetherbeei_contig7117.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7117.1.1
Unique NamemRNA_P-wetherbeei_contig7117.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7117.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7117contigP-wetherbeei_contig7117:2..1509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1305
Hectar predicted targeting categoryother localisation
Exons2
Cds size1302
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.443941-CDS-P-wetherbeei_contig7117:3..9631683186959.443941-CDS-P-wetherbeei_contig7117:3..963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7117 4..963 -
1683186959.4544022-CDS-P-wetherbeei_contig7117:1167..15091683186959.4544022-CDS-P-wetherbeei_contig7117:1167..1509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7117 1168..1509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7117.1.1prot_P-wetherbeei_contig7117.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7117 4..1509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7117.1.1

>prot_P-wetherbeei_contig7117.1.1 ID=prot_P-wetherbeei_contig7117.1.1|Name=mRNA_P-wetherbeei_contig7117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=434bp
LLNRSVESESSDDEPLSECSDGPVDRYALGLWLTPVQGPPGGRDAATKAG
ARSGQWTGRSSASAAPTISRSRFDDPEEALDEAWKAATLASFIPDFVLAE
LLGDRAAGHSWRDKPRQREFEAAVAMIDLCGFTRLAERLKNEHCNFCSDV
CGSAGRGGGSDGGSGGNSNGRTAGSLPLLPFMGPSSAGKDDFRQRLRRFG
SFDSTVLLTPLPPVGATGDAEGNSEPKAPRRHSVDVVDAVGSSARPPFPR
SSSASWADALAAAGSEDVSPALSTRMPVAGVTAASPGAGAGVAPRPVSLP
TVEGAVMPPWNPPMMRQRSGSIPWDILEAQRLEHAVRAGTEKLRSVVGDL
FRALMAHIVECGGDVVRLAGDAVIVLFPAEPADAGIPKQQSALQFGQWQE
RGGVWVCDDDGGGGGSGGGRDDGGGRGDDGDEDL
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mRNA from alignment at P-wetherbeei_contig7117:2..1509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7117.1.1 ID=mRNA_P-wetherbeei_contig7117.1.1|Name=mRNA_P-wetherbeei_contig7117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1508bp|location=Sequence derived from alignment at P-wetherbeei_contig7117:2..1509- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTAAATCGCAGCGTCGAGTCCGAATCGTCCGACGACGAGCCCCTGTC
GGAGTGTTCCGACGGTCCCGTTGACAGATATGCGCTCGGCCTGTGGCTCA
CGCCGGTGCAAGGCCCGCCCGGCGGACGAGACGCGGCGACCAAAGCTGGA
GCGAGGAGCGGCCAATGGACGGGGAGATCCTCCGCTTCGGCCGCCCCTAC
AATCTCGCGGAGCCGCTTCGATGACCCTGAGGAGGCGCTTGACGAGGCGT
GGAAAGCGGCCACGCTGGCGTCCTTCATCCCCGATTTCGTCTTGGCCGAG
CTGTTGGGAGATCGCGCCGCCGGCCACTCCTGGAGAGACAAGGCGAGCTG
TCGGAGCGAGATAATTGTGAAATGGTTTGATCTGTTAGCTTTTTATCTCT
GGAAACCGCGATATGCCGTGCTAGTTGCCTTTCCTGGGTCTTGTGACAAG
TATAAAGTAATTATCGTTCTACTCTTCAGATGTTCTGCGTCTCTTCTTCC
CCCTTCCTTCGCCGTTCCGCCCGTCACTTTACCCCAATAACTGCAGCCTA
GACAGCGTGAGTTCGAGGCGGCGGTAGCCATGATTGACCTCTGCGGCTTC
ACGCGGCTGGCTGAACGCCTTAAAAACGAGCATTGCAACTTTTGCTCCGA
CGTATGCGGCAGCGCCGGCCGCGGCGGTGGTAGTGACGGCGGCAGCGGCG
GCAACAGCAACGGACGAACCGCCGGGTCGCTCCCTCTGCTGCCGTTTATG
GGGCCATCGTCCGCCGGAAAGGACGATTTTCGGCAGCGCCTGCGGCGGTT
CGGGAGCTTTGACAGCACTGTGCTGCTGACGCCGCTGCCACCTGTAGGCG
CCACCGGGGACGCCGAAGGCAATTCGGAACCGAAGGCTCCCCGCCGCCAT
TCCGTCGATGTCGTCGACGCCGTAGGGAGCAGCGCTCGGCCCCCGTTCCC
GCGGTCGTCCAGCGCAAGCTGGGCGGACGCGTTGGCGGCCGCGGGATCTG
AAGACGTTTCGCCGGCGCTGTCCACGAGGATGCCCGTGGCGGGAGTGACG
GCAGCTTCCCCGGGGGCAGGCGCAGGCGTCGCGCCGCGGCCGGTGTCACT
GCCGACTGTTGAGGGAGCCGTCATGCCTCCGTGGAACCCGCCCATGATGC
GGCAGCGCTCCGGCAGCATTCCGTGGGACATTCTCGAGGCGCAGCGGTTG
GAGCACGCGGTCCGGGCGGGCACAGAGAAGCTGCGGAGCGTCGTCGGTGA
CCTCTTTCGGGCGCTGATGGCCCACATCGTCGAGTGCGGGGGCGACGTGG
TTCGGTTGGCGGGGGATGCTGTCATCGTGCTCTTTCCCGCCGAGCCTGCC
GACGCTGGCATCCCGAAGCAACAGTCGGCGCTGCAGTTCGGGCAGTGGCA
GGAGCGCGGCGGCGTGTGGGTCTGCGACGATGACGGCGGCGGCGGCGGCA
GCGGCGGCGGGCGCGACGATGGCGGCGGCCGCGGCGACGACGGTGACGAG
GACCTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7117:2..1509-

>mRNA_P-wetherbeei_contig7117.1.1 ID=mRNA_P-wetherbeei_contig7117.1.1|Name=mRNA_P-wetherbeei_contig7117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1302bp|location=Sequence derived from alignment at P-wetherbeei_contig7117:2..1509- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTAAATCGCAGCGTCGAGTCCGAATCGTCCGACGACGAGCCCCTGTC
GGAGTGTTCCGACGGTCCCGTTGACAGATATGCGCTCGGCCTGTGGCTCA
CGCCGGTGCAAGGCCCGCCCGGCGGACGAGACGCGGCGACCAAAGCTGGA
GCGAGGAGCGGCCAATGGACGGGGAGATCCTCCGCTTCGGCCGCCCCTAC
AATCTCGCGGAGCCGCTTCGATGACCCTGAGGAGGCGCTTGACGAGGCGT
GGAAAGCGGCCACGCTGGCGTCCTTCATCCCCGATTTCGTCTTGGCCGAG
CTGTTGGGAGATCGCGCCGCCGGCCACTCCTGGAGAGACAAGCCTAGACA
GCGTGAGTTCGAGGCGGCGGTAGCCATGATTGACCTCTGCGGCTTCACGC
GGCTGGCTGAACGCCTTAAAAACGAGCATTGCAACTTTTGCTCCGACGTA
TGCGGCAGCGCCGGCCGCGGCGGTGGTAGTGACGGCGGCAGCGGCGGCAA
CAGCAACGGACGAACCGCCGGGTCGCTCCCTCTGCTGCCGTTTATGGGGC
CATCGTCCGCCGGAAAGGACGATTTTCGGCAGCGCCTGCGGCGGTTCGGG
AGCTTTGACAGCACTGTGCTGCTGACGCCGCTGCCACCTGTAGGCGCCAC
CGGGGACGCCGAAGGCAATTCGGAACCGAAGGCTCCCCGCCGCCATTCCG
TCGATGTCGTCGACGCCGTAGGGAGCAGCGCTCGGCCCCCGTTCCCGCGG
TCGTCCAGCGCAAGCTGGGCGGACGCGTTGGCGGCCGCGGGATCTGAAGA
CGTTTCGCCGGCGCTGTCCACGAGGATGCCCGTGGCGGGAGTGACGGCAG
CTTCCCCGGGGGCAGGCGCAGGCGTCGCGCCGCGGCCGGTGTCACTGCCG
ACTGTTGAGGGAGCCGTCATGCCTCCGTGGAACCCGCCCATGATGCGGCA
GCGCTCCGGCAGCATTCCGTGGGACATTCTCGAGGCGCAGCGGTTGGAGC
ACGCGGTCCGGGCGGGCACAGAGAAGCTGCGGAGCGTCGTCGGTGACCTC
TTTCGGGCGCTGATGGCCCACATCGTCGAGTGCGGGGGCGACGTGGTTCG
GTTGGCGGGGGATGCTGTCATCGTGCTCTTTCCCGCCGAGCCTGCCGACG
CTGGCATCCCGAAGCAACAGTCGGCGCTGCAGTTCGGGCAGTGGCAGGAG
CGCGGCGGCGTGTGGGTCTGCGACGATGACGGCGGCGGCGGCGGCAGCGG
CGGCGGGCGCGACGATGGCGGCGGCCGCGGCGACGACGGTGACGAGGACC
TT
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