mRNA_P-wetherbeei_contig7114.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7114.1.1
Unique NamemRNA_P-wetherbeei_contig7114.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: A0A7R9YEV0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEV0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.540e-9
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 LFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            +F L +D     AR+WLLVA+VPD APVRQKML+SSSR D+K+ALG
Sbjct:   69 IFCLAED-VRDGAREWLLVAWVPDTAPVRQKMLFSSSRDDIKSALG 113
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: UPI0003F07599 (twinfilin-1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07599)

HSP 1 Score: 54.3 bits (129), Expect = 3.300e-7
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            C  L+RL  D T+ +  +W+ + YVPDDAPVR+KMLYSS++  LK   G
Sbjct:   67 CYILYRL--DTTNVSGYEWIFILYVPDDAPVREKMLYSSTKTTLKLQFG 113
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: A0A7S1TUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUC3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.140e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   49 RKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALGQG 153
            RKWLLV++VPD A VR KML+S+SR D K+ALG+G
Sbjct:   43 RKWLLVSWVPDTAKVRDKMLFSASRDDFKSALGRG 77
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: A0A7R8XAP6_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XAP6_9CRUS)

HSP 1 Score: 53.9 bits (128), Expect = 4.410e-7
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALGQG 153
            C  L+RL + G S    +WLLV++ PDD+P+R+KMLY+S++  LK + G G
Sbjct:   35 CYILYRLDRSGNSGY--EWLLVSWSPDDSPIREKMLYASTKATLKKSFGSG 83
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: UPI0001CBB66F (twinfilin-1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB66F)

HSP 1 Score: 53.9 bits (128), Expect = 4.540e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            C   +RL  D T+++  +W+ + YVPDDAPVR+KMLYSS++  LK   G
Sbjct:   67 CYIFYRL--DTTNASGYEWIFILYVPDDAPVREKMLYSSTKATLKLQFG 113
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: A0A6J3CDV3_GALME (twinfilin-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J3CDV3_GALME)

HSP 1 Score: 52.0 bits (123), Expect = 1.410e-6
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            C  LFR   D T+S   +WLL+++ PD APVRQKMLY+S++  LK   G
Sbjct:   67 CYILFRF--DSTNSLGYEWLLLSWSPDSAPVRQKMLYASTKATLKQEFG 113
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: L8GS07_ACACA (Twinfilin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GS07_ACACA)

HSP 1 Score: 52.4 bits (124), Expect = 1.600e-6
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 LFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            L+RL     S+ + +W+L++YVPD +PV+Q+MLY+S+R  LK  LG
Sbjct:   70 LYRLDSTDASAGSHEWMLLSYVPDGSPVKQRMLYASTRDYLKRQLG 115
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: UPI0010403448 (twinfilin n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI0010403448)

HSP 1 Score: 52.4 bits (124), Expect = 1.600e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            C  L+RL  D T+S   +WLL+++ PD APVRQKMLY+S++  LK   G
Sbjct:   67 CYILYRL--DTTNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFG 113
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: A0A6J1S080_FRAOC (twinfilin n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1S080_FRAOC)

HSP 1 Score: 52.4 bits (124), Expect = 1.600e-6
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALGQG 153
            C  L+RL     S+ A  W+L+++ PDDAPVRQKMLY+S++  LK   G G
Sbjct:   67 CYILYRLDSKD-STGAYYWMLISWSPDDAPVRQKMLYASTKATLKQEFGSG 116
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BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Match: A0A194R5Z9_PAPMA (Twinfilin n=5 Tax=Papilio TaxID=7145 RepID=A0A194R5Z9_PAPMA)

HSP 1 Score: 52.0 bits (123), Expect = 2.090e-6
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALG 147
            C  L+R   D T+S   +WLL+++ PD APVRQKMLY+S++  LK   G
Sbjct:   67 CYILYRF--DSTNSVGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFG 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7114.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9YEV0_9STRA1.540e-965.22Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
UPI0003F075993.300e-751.02twinfilin-1-like n=1 Tax=Saccoglossus kowalevskii ... [more]
A0A7S1TUC3_9STRA4.140e-768.57Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R8XAP6_9CRUS4.410e-747.06Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
UPI0001CBB66F4.540e-748.98twinfilin-1-like n=1 Tax=Saccoglossus kowalevskii ... [more]
A0A6J3CDV3_GALME1.410e-651.02twinfilin-like n=1 Tax=Galleria mellonella TaxID=7... [more]
L8GS07_ACACA1.600e-647.83Twinfilin, putative n=1 Tax=Acanthamoeba castellan... [more]
UPI00104034481.600e-651.02twinfilin n=1 Tax=Ostrinia furnacalis TaxID=93504 ... [more]
A0A6J1S080_FRAOC1.600e-649.02twinfilin n=1 Tax=Frankliniella occidentalis TaxID... [more]
A0A194R5Z9_PAPMA2.090e-648.98Twinfilin n=5 Tax=Papilio TaxID=7145 RepID=A0A194R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7114contigP-wetherbeei_contig7114:2593..2872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006821227.1
Preferred nameTWF1
PFAMsCofilin_ADF
Model size153
Max annot lvl33208|Metazoa
KEGG koko:K08870,ko:K10161,ko:K14962
KEGG Pathwayko03015,ko04620,ko05142,ko05143,ko05144,ko05152,ko05162,ko05168,map03015,map04620,map05142,map05143,map05144,map05152,map05162,map05168
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0001667,GO:0001932,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003779,GO:0003785,GO:0003824,GO:0004672,GO:0004713,GO:0005080,GO:0005488,GO:0005515,GO:0005524,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008154,GO:0008289,GO:0008361,GO:0008407,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010591,GO:0010592,GO:0010611,GO:0010613,GO:0010631,GO:0010639,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014742,GO:0014743,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016319,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018108,GO:0018193,GO:0018212,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022411,GO:0022412,GO:0022414,GO:0022416,GO:0022603,GO:0022604,GO:0023052,GO:0030016,GO:0030027,GO:0030029,GO:0030036,GO:0030042,GO:0030054,GO:0030154,GO:0030175,GO:0030307,GO:0030424,GO:0030426,GO:0030427,GO:0030516,GO:0030554,GO:0030707,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0030855,GO:0031252,GO:0031323,GO:0031333,GO:0031344,GO:0031346,GO:0031399,GO:0032268,GO:0032271,GO:0032272,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032526,GO:0032530,GO:0032532,GO:0032535,GO:0032536,GO:0032553,GO:0032555,GO:0032559,GO:0032956,GO:0032970,GO:0032984,GO:0033036,GO:0033043,GO:0033267,GO:0033993,GO:0034613,GO:0035091,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036465,GO:0040008,GO:0040011,GO:0042221,GO:0042325,GO:0042989,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0043292,GO:0043412,GO:0043502,GO:0043538,GO:0043624,GO:0043933,GO:0044057,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045185,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0048468,GO:0048471,GO:0048477,GO:0048488,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051016,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051246,GO:0051261,GO:0051493,GO:0051494,GO:0051641,GO:0051649,GO:0051651,GO:0051674,GO:0051693,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0060429,GO:0060491,GO:0061387,GO:0065007,GO:0065008,GO:0070727,GO:0070848,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071363,GO:0071396,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090130,GO:0090132,GO:0090257,GO:0097159,GO:0097367,GO:0097435,GO:0097458,GO:0098657,GO:0098858,GO:0098862,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099504,GO:0099512,GO:0099536,GO:0099537,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0140096,GO:0150034,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1901981,GO:1902743,GO:1902745,GO:1902903,GO:1902904,GO:1902936,GO:2000026
Exons2
Evalue5.41e-08
EggNOG OGsKOG1747@1|root,KOG1747@2759|Eukaryota,38DWE@33154|Opisthokonta,3BCZQ@33208|Metazoa,3CSKT@33213|Bilateria
Descriptionregulation of actin phosphorylation
Cds size153
COG categoryW
BRITEko00000,ko00001,ko03019,ko03036,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.3075736-CDS-P-wetherbeei_contig7114:2592..26431683186959.3075736-CDS-P-wetherbeei_contig7114:2592..2643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7114 2593..2643 -
1683186959.3200564-CDS-P-wetherbeei_contig7114:2770..28721683186959.3200564-CDS-P-wetherbeei_contig7114:2770..2872Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7114 2771..2872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7114.1.1prot_P-wetherbeei_contig7114.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7114 2593..2872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7114.1.1

>prot_P-wetherbeei_contig7114.1.1 ID=prot_P-wetherbeei_contig7114.1.1|Name=mRNA_P-wetherbeei_contig7114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
CIFLFRLGQDGTSSAARKWLLVAYVPDDAPVRQKMLYSSSRQDLKAALGQ
G
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mRNA from alignment at P-wetherbeei_contig7114:2593..2872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7114.1.1 ID=mRNA_P-wetherbeei_contig7114.1.1|Name=mRNA_P-wetherbeei_contig7114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=280bp|location=Sequence derived from alignment at P-wetherbeei_contig7114:2593..2872- (Phaeothamnion wetherbeei SAG_119_79)
TGCATATTCCTCTTTCGCCTCGGGCAAGATGGCACCTCCTCAGCGGCACG
CAAGTGGCTCTTGGTGGCCTACGTGCCAGACGATGCCCCCGTGCGCCAAA
AGGTGAGCATTTCGTATAATCGATCTCAGCCGCGTTCACAAGGGTGAGAA
CCGGCCGTCCATAGATCAGTTCTTAAAACTGCCCCTGACACTTTGTCGGG
TGACACCTTTTTCTCCGTCTGCGGCGCAGATGCTGTACTCGAGCTCCCGG
CAGGACCTCAAGGCGGCGCTCGGCCAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7114:2593..2872-

>mRNA_P-wetherbeei_contig7114.1.1 ID=mRNA_P-wetherbeei_contig7114.1.1|Name=mRNA_P-wetherbeei_contig7114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig7114:2593..2872- (Phaeothamnion wetherbeei SAG_119_79)
TGCATATTCCTCTTTCGCCTCGGGCAAGATGGCACCTCCTCAGCGGCACG
CAAGTGGCTCTTGGTGGCCTACGTGCCAGACGATGCCCCCGTGCGCCAAA
AGATGCTGTACTCGAGCTCCCGGCAGGACCTCAAGGCGGCGCTCGGCCAG
GGC
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