mRNA_P-wetherbeei_contig7112.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7112.3.1
Unique NamemRNA_P-wetherbeei_contig7112.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.330e-44
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    1 EQPTLPTCFVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAMGDA 288
            E+PTL TCFVAGGAAGFGFWG++YPLETIKTR+Q DA EPA R Y  + D F KT AE G++AFYKGY PSIARAVPVNAAIFTGFTAA+RAM  A
Sbjct:  194 EEPTLATCFVAGGAAGFGFWGLWYPLETIKTRIQSDAPEPALRKYKGIMDAFAKTQAEGGLKAFYKGYVPSIARAVPVNAAIFTGFTAAQRAMKKA 289          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 8.970e-40
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 EQPTLPTCFVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAM 279
            EQP+L TCF  G AAG GFWGV+YPLET+KTRMQGD  +P+KRLYS + DCFKKT AE G  AFYKG+ PSI RA+PVN AIFTGFTAA+RA+
Sbjct:  194 EQPSLTTCFAGGAAAGAGFWGVWYPLETLKTRMQGDHVDPSKRLYSGLVDCFKKTMAEGGA-AFYKGFTPSITRAMPVNGAIFTGFTAAQRAL 285          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A6B2LCD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCD6_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.340e-28
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 EQPTLPTCFVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKR-AMGD 285
            E+PTL T F+AGGAAGFGFWG++YPL+ IKTR+Q DAT P  R YSS  DC  K     G  AF++G+ PSI RA+P+NA++F    A KR   GD
Sbjct:  188 EKPTLSTIFLAGGAAGFGFWGIWYPLDIIKTRLQTDATLPQDRKYSSTLDCVVKMMKTEGGAAFWRGWVPSIVRAIPINASVFLAVNATKRFVFGD 283          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.200e-25
Identity = 53/84 (63.10%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   28 VAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAM 279
            V G  AG  FWG+ YPLETIKTRMQ D     KRLY SV DC  KTYAE G++AF+KGY PS+ RAVPVNAAIF      K AM
Sbjct:  208 VGGACAGGMFWGLLYPLETIKTRMQSDHIVKEKRLYKSVLDCASKTYAEGGVQAFFKGYIPSLTRAVPVNAAIFCAVFQVKDAM 291          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A0D2UEL2_CAPO3 (Substrate carrier family protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UEL2_CAPO3)

HSP 1 Score: 90.9 bits (224), Expect = 6.280e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   25 FVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKR 273
            F AGG AG  +W   YPL+ IK++MQ DA++ +KRLYSS+ DC K+TY  +G+  FYKG+   + RA P N A F G+  AK+
Sbjct:  212 FAAGGLAGIAYWIGTYPLDAIKSKMQTDASDRSKRLYSSIADCVKQTYRTSGINGFYKGFGVCMLRAFPANGACFLGYETAKK 294          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A7D8Z8G0_9TREE (Uncharacterized protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8Z8G0_9TREE)

HSP 1 Score: 80.9 bits (198), Expect = 3.700e-16
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   34 GGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAMGD 285
            G +AGF  W   YP++ +K+++Q DA +PAKR YS + DCF++T+   G+R F  G  P++ R+   N A F  F  A RAMG 
Sbjct:  208 GASAGFALWFSIYPVDVVKSKLQTDALDPAKRKYSGMLDCFRQTWRAQGVRGFLGGLEPTLVRSPFANGATFVAFELAMRAMGS 291          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A8H7PNJ7_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PNJ7_MORIS)

HSP 1 Score: 80.5 bits (197), Expect = 4.810e-16
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 EQPTLPTCFVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKR 273
            E PT   C   G   G+  WG+ YPL+ IK+++Q D  + +KR Y S  DC ++  A  G + F++G+ P + RA PVNA  F GF  A R
Sbjct:  205 EIPTTQICLY-GALGGYAMWGMMYPLDVIKSKLQTDNLDVSKRQYRSALDCARQVMATEGPKGFFRGFGPCMLRAAPVNAVTFLGFETAMR 294          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: A0A0J0XFX0_9TREE (Mitochondrial carrier n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XFX0_9TREE)

HSP 1 Score: 80.1 bits (196), Expect = 7.160e-16
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   34 GGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAMGD 285
            G  AG+  W   YP++ +K+++Q D+ +PAKR+Y+S+ DCF+KT+   G R F  G  P++ R+   N A F  F  A R MG+
Sbjct:  207 GALAGYALWASIYPIDVVKSKLQTDSLDPAKRVYASMADCFRKTWRAQGWRGFTGGLEPTLIRSPFANGATFVAFELAMRVMGN 290          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: V5FUC5_BYSSN (Mitochondrial thiamine pyrophosphate carrier 1 n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5FUC5_BYSSN)

HSP 1 Score: 79.0 bits (193), Expect = 1.990e-15
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   34 GGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAMG 282
            GG AG G W   YP + +K++MQ D    A+R +SS+TDCFKKT+A  G+  F+KG  P++ RA+PV+A  F     A RA+G
Sbjct:  225 GGLAGEGLWLASYPFDVVKSKMQTDGFG-AERKFSSMTDCFKKTFAAEGLGGFWKGIGPTLLRAMPVSAGTFAVVELAMRALG 306          
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Match: UPI00053C9055 (mitochondrial arginine transporter BAC2 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9055)

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-15
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    4 QPTLPTCFVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTDCFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAM 279
            + +L T  VAGG AG   W   YPL+ IKTR+QG +     R Y  + DCF+K+  E G    ++G   ++ARA  VN AIF  +  A R +
Sbjct:  202 EESLRTMLVAGGLAGVASWVCCYPLDVIKTRLQGQSGNAENRTYKGIADCFRKSVREEGYEVLWRGLGTAVARAFVVNGAIFAAYEIALRCL 293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7112.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5H4_9STRA6.330e-4476.04Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
D8LDU1_ECTSI8.970e-4072.04Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A6B2LCD6_9EUKA1.340e-2856.25Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A2R5GTK5_9STRA2.200e-2563.10Mitochondrial substrate carrier family protein G n... [more]
A0A0D2UEL2_CAPO36.280e-2049.40Substrate carrier family protein n=1 Tax=Capsaspor... [more]
A0A7D8Z8G0_9TREE3.700e-1642.86Uncharacterized protein n=1 Tax=Vanrija humicola T... [more]
A0A8H7PNJ7_MORIS4.810e-1640.66Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A0J0XFX0_9TREE7.160e-1640.48Mitochondrial carrier n=1 Tax=Cutaneotrichosporon ... [more]
V5FUC5_BYSSN1.990e-1546.99Mitochondrial thiamine pyrophosphate carrier 1 n=2... [more]
UPI00053C90554.400e-1540.22mitochondrial arginine transporter BAC2 n=1 Tax=Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7112contigP-wetherbeei_contig7112:2702..2992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDU1
PFAMsMito_carr
Model size291
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
Exons1
Evalue1.47e-40
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
Cds size291
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.1956458-CDS-P-wetherbeei_contig7112:2701..29921683186959.1956458-CDS-P-wetherbeei_contig7112:2701..2992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7112 2702..2992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7112.3.1prot_P-wetherbeei_contig7112.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7112 2702..2992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7112.3.1

>prot_P-wetherbeei_contig7112.3.1 ID=prot_P-wetherbeei_contig7112.3.1|Name=mRNA_P-wetherbeei_contig7112.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
EQPTLPTCFVAGGAAGFGFWGVFYPLETIKTRMQGDATEPAKRLYSSVTD
CFKKTYAENGMRAFYKGYAPSIARAVPVNAAIFTGFTAAKRAMGDA*
back to top

mRNA from alignment at P-wetherbeei_contig7112:2702..2992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7112.3.1 ID=mRNA_P-wetherbeei_contig7112.3.1|Name=mRNA_P-wetherbeei_contig7112.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig7112:2702..2992- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGCCGACCCTGCCGACGTGCTTCGTGGCAGGCGGCGCGGCCGGCTT CGGCTTTTGGGGTGTCTTCTACCCGCTGGAGACCATCAAAACGCGGATGC AGGGCGACGCCACGGAGCCGGCGAAGCGGCTCTACTCGTCGGTGACGGAC TGCTTTAAAAAGACATACGCAGAGAACGGCATGCGGGCCTTCTACAAGGG CTATGCGCCGTCCATTGCGCGCGCCGTGCCCGTCAACGCCGCCATCTTCA CGGGTTTCACCGCTGCAAAGCGCGCCATGGGAGACGCATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7112:2702..2992-

>mRNA_P-wetherbeei_contig7112.3.1 ID=mRNA_P-wetherbeei_contig7112.3.1|Name=mRNA_P-wetherbeei_contig7112.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig7112:2702..2992- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGCCGACCCTGCCGACGTGCTTCGTGGCAGGCGGCGCGGCCGGCTT
CGGCTTTTGGGGTGTCTTCTACCCGCTGGAGACCATCAAAACGCGGATGC
AGGGCGACGCCACGGAGCCGGCGAAGCGGCTCTACTCGTCGGTGACGGAC
TGCTTTAAAAAGACATACGCAGAGAACGGCATGCGGGCCTTCTACAAGGG
CTATGCGCCGTCCATTGCGCGCGCCGTGCCCGTCAACGCCGCCATCTTCA
CGGGTTTCACCGCTGCAAAGCGCGCCATGGGAGACGCATGA
back to top