mRNA_P-wetherbeei_contig711.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig711.1.3
Unique NamemRNA_P-wetherbeei_contig711.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 3.560e-86
Identity = 217/575 (37.74%), Postives = 283/575 (49.22%), Query Frame = 1
Query:   85 GGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLRALATGGAGPVATSAAMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGGXGVRSPAAASGFFAVRXXXXXXXXXXXXXXXRDRSGGVAAAGAGHTTQARRDMIDGCARLLFCMVKGIQGRVHSRAPQLLRVLFESLLVPKPTSIPVGEADDGGHGANGHTKRCSSSERRSDADGMTAAARGAAEEAGREWCFAVTARMMTLLCHHLRAPHSADVWMEIQFCLGTASARCKAYATAXXXXXXXSSPIITAAYGGVDVAANAVVPKTTEPTGSTAVSSASAKAAAGPAKEXXXXXXXXXXXXAATVAAERAAGVAAEFASLRRAFTLVALAVEHAGGILLRDPPVAKKQVALLAQAI 1809
            G NRFKFQ K+ R   +DVDV H+VR +GFLD D A  P   EGG FFQ EL+R  ELN TPPFKRFYY+VWPLVQSLPELLH A  V+ MLL +L D      AGEE LQL++++ARDL++ F+P FPR    L+ L+A     PE+ G++ R +G+LLKFV   L   +  +R  YAPLLG++ D  R  AA+TLA  +RRL PK +RR+ + L+ ALA G                                                    AAA G                           A AGA    + R D +DGC++LLF   KG+ GR HS+AP LLRVL +SLL PK +   V   +  G   N   ++                      E  R WCF + + ++ LL  H+R+PHSA++W+E+ + LGTA+AR +A                              +P    PTG             G  +E  XXXXXXXXXX A            E A++RR   L++ AV H GGILLR+  +  KQ ALLA+A+
Sbjct:   17 GSNRFKFQGKQARAKRIDVDVAHKVRAEGFLDADKAQNPEV-EGGSFFQQELDRSKELNVTPPFKRFYYKVWPLVQSLPELLHHAPAVVDMLLALLEDPVVVTQAGEETLQLLSVLARDLQSSFFPHFPRVSTALIGLIASPDVSPEICGRVLRCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALAAGNV-------------------------------------------------EAAAGG---------------------------AEAGA---RRLRADTLDGCSQLLFFSAKGVHGRTHSQAPVLLRVLLDSLLPPKLSDANVAPGERAGEEDNLSRRK----------------------ELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGLGTATARHRAS-----------------------------LPPPPAPTGDR-----------GDQEETAXXXXXXXXXXXA------------ECAAVRRTADLLSQAVGHMGGILLREEAIGVKQAALLAEAL 437          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A6H5JFX0_9PHAE (DRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 3.610e-81
Identity = 206/608 (33.88%), Postives = 278/608 (45.72%), Query Frame = 1
Query:   85 GGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLRALATGGAGPVATSAAMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGGXGVRSPAAASGFFAVRXXXXXXXXXXXXXXXRDRSGGVAAAGAGHTTQARRDMIDGCARLLFCMVKGIQGRVHSR---------------------------------APQLLRVLFESLLVPKPTSIPVGEADDGGHGANGHTKRCSSSERRSDADGMTAAARGAAEEAGREWCFAVTARMMTLLCHHLRAPHSADVWMEIQFCLGTASARCKAYATAXXXXXXXSSPIITAAYGGVDVAANAVVPKTTEPTGSTAVSSASAKAAAGPAKEXXXXXXXXXXXXAATVAAERAAGVAAEFASLRRAFTLVALAVEHAGGILLRDPPVAKKQVALLAQAI 1809
            G NRFKFQ K+ R   +DVDV H+VR +GFLD D A  P   EGG FFQ EL+R  ELN TPPFKRFYY+VWPLVQSLPELLH A  V+ MLL +L D      AGEE LQL++++ARDL++ F+P FPR    L+ L+A     PE+ G++ R +G+LLKFV   L   +  +R  Y+PLLG++ D  R  AA+TLA  +RRL PK +RR+ + L+ ALA G                                                  S  AA+G                           A AGA    + R D +DGC++LLF   KG+ GR HS+                                 AP LLRVL +SLL PK +        +   G + H++R                     +E  R WCF + + ++ LL  H+R+PHSA++W+E+ + LGTA+AR +A                              +P    PTG +           G  +E                        +AE A++RR   L++ AV H GGILLR+  +  KQ ALLA+A+
Sbjct:   17 GSNRFKFQGKQARAKRIDVDVAHKVRAEGFLDADKAQNPEV-EGGSFFQQELDRSKELNVTPPFKRFYYKVWPLVQSLPELLHHAPAVVDMLLALLEDPVVVTQAGEETLQLLSVLARDLQSSFFPHFPRVSTALIGLIASPDVSPEICGRVLRCLGFLLKFVARPLSKDMAAVRALYSPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALAAG--------------------------------------------------SVEAAAG---------------------------AEAGA---RRLRADTLDGCSQLLFFSAKGVHGRTHSQVGVGGSTHRSNKTQYAAIFFAALFVVALCRCAQAPVLLRVLLDSLLPPKLSDTNARPPGERAGGEDNHSRR---------------------KELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGLGTAAARHRAS-----------------------------LPLRPPPTGGS-----------GDQEE------------------------SAECAAVRRTADLLSQAVGHMGGILLREEAIGVKQAALLAEAL 458          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A835YZH5_9STRA (DRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH5_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.440e-74
Identity = 139/246 (56.50%), Postives = 174/246 (70.73%), Query Frame = 1
Query:   58 KTLNPE--AATGGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNA-DDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLRALATGGAGPVATSAAM 786
            K+LNP+  + +GGNRFKF  K+ R   VDVDV H+VR  G+LD D + +P  GEGGCFFQDELERC ++N TPPFKRFYY VWPLVQSL ELLH +ATV  MLL ++ D  T   AGE+LLQL++++ARDL++ F+P F  +MDVL  LL   A D+PE AG++ R VGY+LKF    LL     LR YYAPLLG+R D+VR +A ET AA+LR+L PK  R + R+LLRALA   A      AA+
Sbjct:    4 KSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLPEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSATVAAMLLKLIQDPATHGVAGEQLLQLLSVLARDLQSAFHPHFAPSMDVLAALLQGPAGDEPEAAGRVMRAVGYILKFDIRPLLEDPAALRAYYAPLLGHRRDYVRRYAGETFAAVLRKLKPKAARAHARALLRALADAAAAXXXXXAAL 249          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A835YJ13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ13_9STRA)

HSP 1 Score: 233 bits (595), Expect = 2.140e-69
Identity = 117/207 (56.52%), Postives = 148/207 (71.50%), Query Frame = 1
Query:   58 KTLNPE--AATGGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNA-DDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAE 669
            K+LNP+  + +GGNRFKF  K+ R   VDVDV H+VR  G+LD D + +   GEGGCFFQDELERC ++N TPPFKRFYY VWPLVQSL ELLH +A V  MLL ++ D  T   AGE+LLQL++++ARDL++ F+P F  + DVL  LL   A D+PE AG++ R VGY+LKF    LLA    LR YYAPLLG+R D+VR +A +
Sbjct:    4 KSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGD 210          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A7R9YFR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFR7_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.960e-26
Identity = 86/231 (37.23%), Postives = 125/231 (54.11%), Query Frame = 1
Query:   94 RFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDA---AAVPASGEGG-----CFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLS-DRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFV----GPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLRALA 747
            R +F+++  ++    V    ++R +G L  DA    AV A  E       C    EL+R  ELN  P +KR YY +WPLVQSL  +LH    +L  LL +L+     C A     LQL A+MA+DL+ E  P FP+    +L   A + DD E++ K F T+GY+L+F+    G   L +L  L P Y P LG+  D++R  AA+T +  LR++  K  RR+V  +L+A A
Sbjct:   28 RRRFRSEAYKLRKASVAPGEKLREEGGLRSDALDAGAVSAELESSFSGQRCALAVELDRQRELNIAPLWKRSYYELWPLVQSLAHVLHHRDAILERLLLLLAAPSPPCKATA---LQLAAVMAKDLQEELLPAFPKLSKAILT--AVDVDDAELSTKAFETLGYVLRFLAERSGAGKLPAL--LTPLYGPFLGHSRDYIRKLAAQTFSIALRKVGRKAFRRHVVGVLKAAA 251          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A0D2WIZ9_CAPO3 (DRIM domain-containing protein n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WIZ9_CAPO3)

HSP 1 Score: 118 bits (296), Expect = 7.450e-24
Identity = 82/213 (38.50%), Postives = 119/213 (55.87%), Query Frame = 1
Query:  100 KFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYR-GDHVRAFAAETLAALLRRLPPKPLRRYVRSLL 735
            +FQ+  +R+  V ++V HRV G   ++P+A        GG FF + L +  EL+ T  F  F  +V+PLVQ+L +LL     V+  LL  L++   CAA    LL L+A +ARDLR EFYP FPR+  ++ R+L + A+DP V    F  + YL KF+   L+  + D+   Y  LL      ++RAFAAE+ A LLR++P       V  LL
Sbjct:   41 QFQSFNERIKKVSINVAHRV-GAVAVEPEA--------GGSFFNEALMKWRELDCTREFVTFTNKVYPLVQTLHQLLFHKDAVIDALLVHLAE-PNCAAL-PALLDLLAQLARDLREEFYPDFPRSFVIVARVL-EEANDPPVIEAAFTALSYLFKFLLRYLIRDMRDVFRLYRHLLASDVRPYIRAFAAESFALLLRKVPANAFHNSVGLLL 241          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A2P6NS46_9EUKA (UTP20, small subunit (SSU) processome component n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NS46_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 9.870e-24
Identity = 67/224 (29.91%), Postives = 119/224 (53.12%), Query Frame = 1
Query:   34 KGTGSVLAKTL---NPEAATGGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRL 696
            K  G+  AK L     +A+  GNRFK+Q + +++  VDVD+ H++ G          +  S     +F++ L +  +LN T  F  F   V+P+  SL ++L+    + G+L+  L    + A A   LL L   ++RDL+ EFYP     +  L ++L      PE+   IF+T+GY  K++   ++  ++ +  Y+  L+ +R D+V++++A+  A LLR+L
Sbjct:  405 KRQGNKAAKRLIKKPKQASESGNRFKYQGRNEKIAEVDVDIFHKIGG--------ITIKLSDPTSSYFRESLHQWTDLNLTRDFLNFSTEVYPISNSLAQILYHKKDIHGILIKHLQVPDSLALA--PLLNLACQLSRDLQEEFYPMMEETIKTLSKVLDSKLLQPEILESIFQTIGYFFKYLHKHVIQDINHVWSYFYSLVSHRDDYVKSWSAQVFAFLLRKL 618          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: A0A1Y1HR11_KLENI (Down-regulated in metastasis family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR11_KLENI)

HSP 1 Score: 117 bits (294), Expect = 1.320e-23
Identity = 85/229 (37.12%), Postives = 120/229 (52.40%), Query Frame = 1
Query:   58 KTLNPE-AATGGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNAD-DPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLR 738
            K+LN   +  G  RF F++  QRV +VDVDV   +    F +P A        G  FFQ+ L +  ELN    F   Y  V+PLVQSLP+LL    TV+  LL  +      +   E +L L+A+++RDLR +F PF    +   LRLL   AD +P+V  +IF +V Y+ K +   L   L     Y   +  +R D+VR FAAE ++ L R  P K L + VR L++
Sbjct:    8 KSLNKSYSGPGTKRFVFKSFAQRVASVDVDVFRSLAPVKF-EPTA--------GTSFFQENLLQWRELNTAADFNLLYGEVYPLVQSLPQLLLHKKTVVRALLARMHIGALLSL--EPVLSLIAVLSRDLREDFLPFVAPFLGACLRLLEGGADREPDVLEQIFTSVSYVFKHLVKYLAKDLTQALKYTRLIRYHRRDYVRDFAAEAVSFLFRNAPLKQLIKGVRHLMK 225          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: UPI000C1CF337 (small subunit processome component 20 homolog n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF337)

HSP 1 Score: 114 bits (286), Expect = 1.230e-22
Identity = 78/235 (33.19%), Postives = 125/235 (53.19%), Query Frame = 1
Query:   46 SVLAKTLNPEAATGGNRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNAD-DPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLRALA 747
            S   K+LN     G  RF F++  QR+  +D+DV         L+P   A P+  EG  FF+D +    ELN    F  FY  ++PLVQ+LP+++ +   +L  LL  L  +   +   E +L+L+A ++RDL  +F PF  R  D L  LL   AD +PE+  +IF +  Y+L ++   L+  +  +      L  Y  D+VR F AE+++ LLR+ P + L+R +R+ +  +A
Sbjct:    7 SQAVKSLN--TGPGRRRFTFKSFSQRIEEIDIDVYRS------LNP-LKAEPS--EGSSFFRDCIIEYRELNTAEDFISFYEEMFPLVQTLPQIILQKELILSYLLSRLKMKGRLSL--EPILRLIAALSRDLLEDFIPFLQRIADSLTSLLESGADREPEIIEQIFTSWSYILMYLQKYLIRQVGHVLSITVKLRYYPRDYVREFMAESVSFLLRKTPVQHLKRDIRNAMLEVA 228          
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Match: S4RME1_PETMA (Uncharacterized protein n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RME1_PETMA)

HSP 1 Score: 108 bits (270), Expect = 1.640e-22
Identity = 68/203 (33.50%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   91 NRFKFQTKRQRVWAVDVDVVHRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVWPLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRAEFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFVGPQLLASLDDLRPYYAPLLGYRGDHVRAFAAETLAALLRRLP 699
            NRF+F T  +R+  V++DV+HR+   G L         S E   +F + L++  +LNAT  F  F   V  L QS P+L+H    V+  L   L    + A   + LL LV  +ARDL+A+FYP FP    ++  LL     D +     F  + YL K++   L+  + ++   Y+ LL ++ +H++ FAAE+ A L+R++P
Sbjct:   12 NRFRFLTFAERLANVNIDVIHRIDRTGSL---------SEEVETYFYEGLQKWKDLNATENFGTFLREVNGLCQSFPQLVHHQNAVVQALKAHLQVPNSLAL--QPLLDLVVQLARDLQADFYPHFPEFFSIVTGLL--QTQDTDQLEWAFCCLAYLYKYLWKPLIRDIQNVYSMYSTLLAHKKEHIKNFAAESFAFLMRKVP 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig711.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFJ6_ECTSI3.560e-8637.74DRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JFX0_9PHAE3.610e-8133.88DRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YZH5_9STRA1.440e-7456.50DRIM domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YJ13_9STRA2.140e-6956.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YFR7_9STRA8.960e-2637.23Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A0D2WIZ9_CAPO37.450e-2438.50DRIM domain-containing protein n=3 Tax=Capsaspora ... [more]
A0A2P6NS46_9EUKA9.870e-2429.91UTP20, small subunit (SSU) processome component n=... [more]
A0A1Y1HR11_KLENI1.320e-2337.12Down-regulated in metastasis family protein n=1 Ta... [more]
UPI000C1CF3371.230e-2233.19small subunit processome component 20 homolog n=1 ... [more]
S4RME1_PETMA1.640e-2233.50Uncharacterized protein n=2 Tax=Petromyzon marinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig711contigP-wetherbeei_contig711:35..2398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFJ6
PFAMsDRIM,DUF1068
Model size1819
Max annot lvl2759|Eukaryota
KEGG koko:K14772,ko:K16569
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Exons3
Evalue5.84e-87
EggNOG OGsKOG1823@1|root,KOG1823@2759|Eukaryota
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size1818
COG categoryS
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.965666-CDS-P-wetherbeei_contig711:34..13151683186958.965666-CDS-P-wetherbeei_contig711:34..1315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig711 35..1315 -
1683186958.9748297-CDS-P-wetherbeei_contig711:1630..17711683186958.9748297-CDS-P-wetherbeei_contig711:1630..1771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig711 1631..1771 -
1683186958.982981-CDS-P-wetherbeei_contig711:2002..23981683186958.982981-CDS-P-wetherbeei_contig711:2002..2398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig711 2003..2398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig711.1.3prot_P-wetherbeei_contig711.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig711 35..2398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig711.1.3

>prot_P-wetherbeei_contig711.1.3 ID=prot_P-wetherbeei_contig711.1.3|Name=mRNA_P-wetherbeei_contig711.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=606bp
MENRAKGLGVGKGTGSVLAKTLNPEAATGGNRFKFQTKRQRVWAVDVDVV
HRVRGDGFLDPDAAAVPASGEGGCFFQDELERCMELNATPPFKRFYYRVW
PLVQSLPELLHRAATVLGMLLDMLSDRKTCAAAGEELLQLVAIMARDLRA
EFYPFFPRAMDVLLRLLADNADDPEVAGKIFRTVGYLLKFVGPQLLASLD
DLRPYYAPLLGYRGDHVRAFAAETLAALLRRLPPKPLRRYVRSLLRALAT
GGAGPVATSAAMVVVVPEAEAEAAAEAAAGADADAENDADGDVDTGGGGV
RSPAAASGFFAVRGGGGGSGGESSGGGDRDRSGGVAAAGAGHTTQARRDM
IDGCARLLFCMVKGIQGRVHSRAPQLLRVLFESLLVPKPTSIPVGEADDG
GHGANGHTKRCSSSERRSDADGMTAAARGAAEEAGREWCFAVTARMMTLL
CHHLRAPHSADVWMEIQFCLGTASARCKAYATAAAAAAAASSPIITAAYG
GVDVAANAVVPKTTEPTGSTAVSSASAKAAAGPAKEAGAAVPTAGVAVAA
TVAAERAAGVAAEFASLRRAFTLVALAVEHAGGILLRDPPVAKKQVALLA
QAIEGQ
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mRNA from alignment at P-wetherbeei_contig711:35..2398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig711.1.3 ID=mRNA_P-wetherbeei_contig711.1.3|Name=mRNA_P-wetherbeei_contig711.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2364bp|location=Sequence derived from alignment at P-wetherbeei_contig711:35..2398- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAACCGTGCTAAAGGGCTCGGGGTCGGAAAGGGGACGGGTAGTGT GCTTGCAAAGACCCTCAACCCAGAAGCAGCCACGGGAGGCAACAGGTTCA AATTCCAGACAAAGCGACAGCGCGTGTGGGCCGTCGATGTCGACGTTGTC CACAGGGTTCGCGGCGACGGCTTTCTCGATCCCGATGCAGCGGCAGTACC TGCTTCCGGCGAGGGCGGATGCTTCTTTCAGGACGAACTGGAGCGCTGCA TGGAGCTGAACGCGACGCCGCCCTTCAAGCGCTTCTATTACCGCGTGTGG CCTCTGGTCCAGTCCCTGCCGGAACTTCTTCATCGTGCCGCTACGGTCCT CGGAATGCTGCTTGACATGCTGTCCGACCGCAAGACGTGCGCAGCGGTGA GTGCCGATAGCAATGGCCCGCTTTCTGGTTTCTGAATGGGCAGATCTAAA ATGCGCCCATTGCGCCGTGCTTCGCGCCGTTTGGCTTTTGGTACATCATT TTTAGTACCCAAGCTCTGTGATCATCTCCTGTCTGAAATTAGATTCTCGG GGCTGCTTTGAGTCCTTCCCGTTTCGCACTTCTTATCTCTGTTCTTTTCG AAGTCTCGTTTTGCCTCGTTTGTCTAGGCCGGAGAGGAGCTGCTGCAGCT CGTCGCCATCATGGCGCGCGACCTGCGGGCTGAGTTCTACCCGTTCTTTC CACGCGCCATGGACGTGCTGCTGCGCCTGCTCGCAGACAACGCTGACGAT CCGGAGGTCGCCGGAAAGGTCAGCCTTGTTCTTCCTTCTTATCCGTCCTT TCCCTCTCTACGTTATCCTGGCTTCTGCGGGTCGCGTGTTTATGCGCTGC AAAGATTATGGCGTGTCGACGGCTTGGGAATGAAGCTCTGTGACGTCGCT ACGTGCTCCAGACACTGGTTTACGTCCCGTGTTCCCCTTGATGGCGGGTG GTCGTAGCCGCTCTCTCCACTGCTAGCTGTCTAGGGGTTCTCCACGCATT TTCTTCATCGCGATTGACAGCTCATTCCCGCCGTCTTTCCCTGTTTGCCC TTCCTCTCCTTTTCTCCCTCCTTTCGTCCCCAGATCTTTAGGACCGTCGG CTATTTGCTAAAGTTTGTGGGGCCGCAGCTCCTCGCGTCCCTCGACGACC TGCGCCCCTACTATGCCCCGCTGCTAGGCTACCGCGGCGACCATGTGCGA GCGTTCGCCGCTGAGACACTGGCGGCGCTGCTGCGGCGGCTGCCGCCGAA GCCGCTGCGGCGGTACGTGCGGTCACTGCTCCGTGCGCTGGCTACGGGCG GCGCCGGCCCCGTCGCGACGAGTGCTGCTATGGTGGTGGTGGTGCCGGAG GCGGAGGCAGAGGCGGCGGCGGAGGCAGCGGCTGGCGCTGATGCCGATGC TGAAAACGATGCGGACGGCGACGTTGACACGGGGGGAGGCGGCGTCAGGA GTCCAGCGGCGGCTAGTGGGTTCTTCGCTGTGAGGGGTGGCGGAGGCGGC AGCGGCGGTGAAAGCAGCGGCGGCGGTGACCGCGACCGCAGCGGCGGCGT CGCAGCGGCGGGAGCGGGCCACACGACACAGGCGCGTCGCGACATGATCG ACGGCTGCGCCCGGCTGCTCTTCTGCATGGTGAAGGGCATCCAGGGCCGC GTGCACTCCCGGGCGCCGCAGCTGCTGCGCGTCCTTTTCGAGTCGCTCCT GGTGCCGAAGCCCACGAGTATCCCTGTCGGCGAAGCGGACGACGGAGGCC ACGGCGCGAACGGTCACACGAAGCGGTGCAGCTCTTCTGAAAGGAGGAGC GACGCTGATGGCATGACTGCAGCGGCACGCGGCGCGGCGGAGGAGGCTGG GCGCGAGTGGTGCTTCGCGGTGACGGCGCGCATGATGACACTGCTATGCC ACCACCTTCGGGCGCCGCACAGCGCCGATGTCTGGATGGAGATTCAGTTC TGCCTCGGCACGGCATCAGCGCGGTGCAAAGCATACGCTACTGCGGCAGC GGCGGCGGCTGCGGCGTCGAGCCCTATAATAACGGCGGCTTACGGCGGCG TCGATGTAGCTGCCAATGCCGTGGTGCCGAAAACGACCGAACCGACAGGT TCCACAGCAGTTTCATCTGCCAGCGCCAAGGCAGCAGCAGGGCCAGCGAA AGAGGCGGGAGCGGCAGTACCGACGGCGGGGGTTGCGGTTGCGGCGACGG TGGCGGCCGAGCGTGCGGCGGGGGTGGCGGCGGAATTTGCGTCGCTGCGG CGGGCCTTCACTTTGGTGGCGCTGGCGGTGGAGCACGCCGGCGGCATCCT GCTGCGCGACCCGCCGGTTGCGAAGAAGCAGGTGGCGCTTCTCGCCCAAG CGATCGAGGGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig711:35..2398-

>mRNA_P-wetherbeei_contig711.1.3 ID=mRNA_P-wetherbeei_contig711.1.3|Name=mRNA_P-wetherbeei_contig711.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1818bp|location=Sequence derived from alignment at P-wetherbeei_contig711:35..2398- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAACCGTGCTAAAGGGCTCGGGGTCGGAAAGGGGACGGGTAGTGT
GCTTGCAAAGACCCTCAACCCAGAAGCAGCCACGGGAGGCAACAGGTTCA
AATTCCAGACAAAGCGACAGCGCGTGTGGGCCGTCGATGTCGACGTTGTC
CACAGGGTTCGCGGCGACGGCTTTCTCGATCCCGATGCAGCGGCAGTACC
TGCTTCCGGCGAGGGCGGATGCTTCTTTCAGGACGAACTGGAGCGCTGCA
TGGAGCTGAACGCGACGCCGCCCTTCAAGCGCTTCTATTACCGCGTGTGG
CCTCTGGTCCAGTCCCTGCCGGAACTTCTTCATCGTGCCGCTACGGTCCT
CGGAATGCTGCTTGACATGCTGTCCGACCGCAAGACGTGCGCAGCGGCCG
GAGAGGAGCTGCTGCAGCTCGTCGCCATCATGGCGCGCGACCTGCGGGCT
GAGTTCTACCCGTTCTTTCCACGCGCCATGGACGTGCTGCTGCGCCTGCT
CGCAGACAACGCTGACGATCCGGAGGTCGCCGGAAAGATCTTTAGGACCG
TCGGCTATTTGCTAAAGTTTGTGGGGCCGCAGCTCCTCGCGTCCCTCGAC
GACCTGCGCCCCTACTATGCCCCGCTGCTAGGCTACCGCGGCGACCATGT
GCGAGCGTTCGCCGCTGAGACACTGGCGGCGCTGCTGCGGCGGCTGCCGC
CGAAGCCGCTGCGGCGGTACGTGCGGTCACTGCTCCGTGCGCTGGCTACG
GGCGGCGCCGGCCCCGTCGCGACGAGTGCTGCTATGGTGGTGGTGGTGCC
GGAGGCGGAGGCAGAGGCGGCGGCGGAGGCAGCGGCTGGCGCTGATGCCG
ATGCTGAAAACGATGCGGACGGCGACGTTGACACGGGGGGAGGCGGCGTC
AGGAGTCCAGCGGCGGCTAGTGGGTTCTTCGCTGTGAGGGGTGGCGGAGG
CGGCAGCGGCGGTGAAAGCAGCGGCGGCGGTGACCGCGACCGCAGCGGCG
GCGTCGCAGCGGCGGGAGCGGGCCACACGACACAGGCGCGTCGCGACATG
ATCGACGGCTGCGCCCGGCTGCTCTTCTGCATGGTGAAGGGCATCCAGGG
CCGCGTGCACTCCCGGGCGCCGCAGCTGCTGCGCGTCCTTTTCGAGTCGC
TCCTGGTGCCGAAGCCCACGAGTATCCCTGTCGGCGAAGCGGACGACGGA
GGCCACGGCGCGAACGGTCACACGAAGCGGTGCAGCTCTTCTGAAAGGAG
GAGCGACGCTGATGGCATGACTGCAGCGGCACGCGGCGCGGCGGAGGAGG
CTGGGCGCGAGTGGTGCTTCGCGGTGACGGCGCGCATGATGACACTGCTA
TGCCACCACCTTCGGGCGCCGCACAGCGCCGATGTCTGGATGGAGATTCA
GTTCTGCCTCGGCACGGCATCAGCGCGGTGCAAAGCATACGCTACTGCGG
CAGCGGCGGCGGCTGCGGCGTCGAGCCCTATAATAACGGCGGCTTACGGC
GGCGTCGATGTAGCTGCCAATGCCGTGGTGCCGAAAACGACCGAACCGAC
AGGTTCCACAGCAGTTTCATCTGCCAGCGCCAAGGCAGCAGCAGGGCCAG
CGAAAGAGGCGGGAGCGGCAGTACCGACGGCGGGGGTTGCGGTTGCGGCG
ACGGTGGCGGCCGAGCGTGCGGCGGGGGTGGCGGCGGAATTTGCGTCGCT
GCGGCGGGCCTTCACTTTGGTGGCGCTGGCGGTGGAGCACGCCGGCGGCA
TCCTGCTGCGCGACCCGCCGGTTGCGAAGAAGCAGGTGGCGCTTCTCGCC
CAAGCGATCGAGGGGCAG
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