mRNA_P-wetherbeei_contig7101.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7101.1.1
Unique NamemRNA_P-wetherbeei_contig7101.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: D8LL75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL75_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.680e-21
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 HAYTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFDL 159
            HAY VVFVRHGQSTWNKANRFIGW D ELT+ GE+EARVAGQ+LLS+ +EFD+
Sbjct:   20 HAYEVVFVRHGQSTWNKANRFIGWTDAELTEEGEIEARVAGQLLLSQEFEFDV 72
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: A0A836CGX1_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.110e-21
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    4 AYTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFDL 159
            AY V+FVRHGQSTWNKANRFIGW D  LT+ GELEARVAGQVLL+ GYEFD+
Sbjct:    8 AYKVIFVRHGQSTWNKANRFIGWTDPNLTKTGELEARVAGQVLLAAGYEFDI 59
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: A0A6H5L2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.180e-20
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 HAYTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFDL 159
            H Y VVF+RHGQSTWNKANRFIGW D ELT+ GE+EARVAGQ+LLS+ +EFD+
Sbjct:  129 HTYEVVFLRHGQSTWNKANRFIGWTDAELTEEGEIEARVAGQLLLSQEFEFDV 181
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: A0A3E0PEP5_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0PEP5_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 9.010e-16
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFDL 159
            Y +V VRHGQS WNK NRF GW D +LT+ G LEA+ AG+ LL EG+EFD+
Sbjct:    2 YKLVLVRHGQSEWNKTNRFTGWTDVDLTEQGRLEAKTAGETLLKEGFEFDI 52
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: B8BZZ2_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZZ2_THAPS)

HSP 1 Score: 74.3 bits (181), Expect = 6.360e-15
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFD 156
            Y + FVRHGQSTWN+ NRFIGW DT LT+ G LEARVAG++L S G  FD
Sbjct:    1 YNLCFVRHGQSTWNRDNRFIGWTDTPLTEDGVLEARVAGRMLRSSGMLFD 50
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: K0R887_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R887_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 6.870e-15
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFD 156
            Y VVFVRHGQSTWN+ NRFIGW DT LT  G LEAR+AG++L S G  FD
Sbjct:   26 YNVVFVRHGQSTWNRDNRFIGWTDTPLTDEGVLEARLAGRMLSSSGILFD 75
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: GPMA_AZOSB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=6 Tax=Betaproteobacteria TaxID=28216 RepID=GPMA_AZOSB)

HSP 1 Score: 73.9 bits (180), Expect = 1.350e-14
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFDL 159
            Y +V +RHG+STWNK NRF GW D +LT+ G  EAR AGQ+L  EGY FDL
Sbjct:    2 YKIVLLRHGESTWNKENRFTGWTDVDLTELGVGEARAAGQLLKREGYSFDL 52
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: A0A8I0B253_9DELT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Desulfomicrobiaceae bacterium TaxID=2053547 RepID=A0A8I0B253_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 1.380e-14
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFD 156
            +T+VFVRHG+STWNK NRF GW D +LT+ G  EAR AG++L +EG+ FD
Sbjct:    2 HTIVFVRHGESTWNKENRFTGWTDVDLTEKGMAEAREAGRMLKAEGFTFD 51
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: A0A7S2UC80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UC80_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.490e-14
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFD 156
            Y +VF+RHGQSTWN+ NRFIGW DT LT  G LEAR AGQ+L   G  FD
Sbjct:   42 YNLVFLRHGQSTWNRDNRFIGWTDTPLTDDGVLEARAAGQMLSRSGILFD 91
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BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Match: A0A6U3XTA7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XTA7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.700e-14
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 YTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYEFD 156
            +T+ FVRHGQSTWN+ NRFIGW DT LT+ G LEAR+AGQ+L   G  FD
Sbjct:   68 FTLCFVRHGQSTWNRDNRFIGWTDTPLTEDGVLEARIAGQMLQKSGILFD 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL75_ECTSI1.680e-2179.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGX1_9STRA2.110e-2180.77Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
A0A6H5L2H5_9PHAE3.180e-2075.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3E0PEP5_9BACT9.010e-1662.752,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
B8BZZ2_THAPS6.360e-1568.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0R887_THAOC6.870e-1570.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
GPMA_AZOSB1.350e-1462.752,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A8I0B253_9DELT1.380e-1462.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7S2UC80_9STRA2.490e-1466.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A6U3XTA7_9STRA2.700e-1466.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7101contigP-wetherbeei_contig7101:3..1113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL75
PFAMsHis_Phos_1
Model size159
Max annot lvl2759|Eukaryota
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue2.76e-22
EggNOG OGsCOG0588@1|root,KOG0235@2759|Eukaryota
EC5.4.2.11
Descriptionregulation of pentose-phosphate shunt
Cds size159
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.6741846-CDS-P-wetherbeei_contig7101:2..811683186958.6741846-CDS-P-wetherbeei_contig7101:2..81Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7101 3..81 -
1683186958.687567-CDS-P-wetherbeei_contig7101:615..6541683186958.687567-CDS-P-wetherbeei_contig7101:615..654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7101 616..654 -
1683186958.699323-CDS-P-wetherbeei_contig7101:1072..11131683186958.699323-CDS-P-wetherbeei_contig7101:1072..1113Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7101 1073..1113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7101.1.1prot_P-wetherbeei_contig7101.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7101 3..1113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7101.1.1

>prot_P-wetherbeei_contig7101.1.1 ID=prot_P-wetherbeei_contig7101.1.1|Name=mRNA_P-wetherbeei_contig7101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
HAYTVVFVRHGQSTWNKANRFIGWVDTELTQAGELEARVAGQVLLSEGYE
FDL
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mRNA from alignment at P-wetherbeei_contig7101:3..1113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7101.1.1 ID=mRNA_P-wetherbeei_contig7101.1.1|Name=mRNA_P-wetherbeei_contig7101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1111bp|location=Sequence derived from alignment at P-wetherbeei_contig7101:3..1113- (Phaeothamnion wetherbeei SAG_119_79)
CATGCATACACTGTGGTCTTCGTACGGCACGGGCAAAGCACGTATGTGAT
CGCATTTTGGAGATTCGTTGATATTTTGTTGGGACTTTTGTTTTGGGGCG
AATTATCTCTTCACTCCTTCTCGCTGGGCACCTCCAAGATGCACTACTAG
CTTTCTGGTATTCCAGCGCTGCGCCCGGAGGTCTTTTGTCGCATATGGTT
CATTTTTACTCCTTTGCGCTGGTGGTTGTGTTGGAGGTTGTGTTTCAAAT
CTCTGCACCGTTTTAAGTCAAAGTGAACGGGAAAAACTCGCGGCGTTACG
TGCTCTGCAATTGCACTAACTTTCCGCTTCTTGGATAGGGTGCATTTGTG
AAGCGCTTCTGCTCATGAAATCCATCCATCAAGCCCGTAATCAAACATAT
CTGATCCTTGCAACCTTTTCGCTCGAAAAAACGTGCCGGCCGCATTCTTT
TGTGCGCAGATGGAACAAGGCAAACAGATTTATAGGCTGGGTCGATACGT
GAGCGTATATTCTATCGATCTTCTTTTGCCTGCTCGTGCAACGACTGCCA
AGCCTCCGCTTCGTCTCGTATTGCAGCCGCTTCTCCTTCATTTGTTCGGC
ATTCGGACAAATGAAGCACTTGTCTTTGCCTTGTTGCGTGCGGCGTAAGC
TATACGCCTCTTCTCACTCTTTTCCCTCTCCTTCTGCGATGCCTAATGGA
ACACTGCTTTCCATCCCATGATGGCGGGAACACTGCAATAACTGGTGACG
GCAATAACAACGCTCGCATGCGGTTACCGCTGAATCCGACGGACGACGGC
GCCGGCAAAAAAATGCGGTTTCTGTGATGGCTTATCTCGCAACAATGACT
GCCAAACACAATCAATGATCGCAACGAAACTAATATCGCCGGCGGCGGTG
GTGGCGACGCGTGGCGTGGCGGTGGGCTTCCGCGCTGACCGACGCCGCAC
CCACGAAACCGGCCAACGGCAACTCCAACATGTGATATGCATCAACCGAC
GCTATTTTCGACGCAATCGCCTGGCTTTTCAGTGAGCTGACCCAGGCGGG
GGAGCTGGAGGCGCGCGTCGCCGGCCAAGTGCTGCTCTCCGAAGGCTACG
AATTTGACCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7101:3..1113-

>mRNA_P-wetherbeei_contig7101.1.1 ID=mRNA_P-wetherbeei_contig7101.1.1|Name=mRNA_P-wetherbeei_contig7101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig7101:3..1113- (Phaeothamnion wetherbeei SAG_119_79)
CATGCATACACTGTGGTCTTCGTACGGCACGGGCAAAGCACATGGAACAA
GGCAAACAGATTTATAGGCTGGGTCGATACTGAGCTGACCCAGGCGGGGG
AGCTGGAGGCGCGCGTCGCCGGCCAAGTGCTGCTCTCCGAAGGCTACGAA
TTTGACCTC
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