mRNA_P-wetherbeei_contig71.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig71.5.1
Unique NamemRNA_P-wetherbeei_contig71.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.430e-26
Identity = 69/185 (37.30%), Postives = 99/185 (53.51%), Query Frame = 2 
Query:  521 GVIFSRAGAAVGVAGPGQMPLPPGG-----SVQLVVCSGCGRVGMLPQRQSVANLVCECGTAVRPATAEQLMAMLARGS-IPSIPAVSPPPRGVSPELLALLPVIPFR---PXXXXXXXXXXXXXXTVSCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLVEMFRESAAAE 1048
            G + + +G+     GP   P  PG      SVQ+V+C+ CGRVGMLP + + A  +C CGT V  AT  QL+ ++ RG  + ++  V    +G S EL+ALLP +  R                   VSCRVCL  + + E LR+LPC H++H  C D W  RS  CPLCNT++ +  ++   A+
Sbjct:   15 GGLMNSSGSVTFATGP---PAEPGAAMNSTSVQVVMCTNCGRVGMLPHQSTTAVFLCPCGTPVLAATPGQLLTLITRGGGLGALEGVHHH-QGASKELVALLPTVTHRGDCKAAATAQEAFGEDDDKVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVDKALQQHGGAD 195
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A7S1MG68_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MG68_ALECA)

HSP 1 Score: 70.9 bits (172), Expect = 2.140e-10
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNL 1015
             C VCLEPF + E+LR+LPC+HR+H+ C D W GR   CPLC +++
Sbjct:  157 QCMVCLEPFRQGEKLRILPCIHRFHVCCIDPWLGRRRECPLCKSHV 202
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A7S2J5N4_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2J5N4_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 2.960e-10
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNL 1015
             C VCLEPF + EELR+LPC+HRYH  C D W  RS  CP+C  ++
Sbjct:   74 QCCVCLEPFKQGEELRMLPCMHRYHKHCIDRWLSRSPACPVCKYDI 119
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A7S2NHW6_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2NHW6_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 6.610e-10
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 2 
Query:  872 TVSCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNL 1015
            T  C VCLE F   E LR+LPC+HR+H++C D W GR   CPLC + +
Sbjct:   68 TDQCMVCLESFRPGERLRILPCIHRFHVSCIDPWLGRRRECPLCKSEV 115
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A7S1HED0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HED0_HEMAN)

HSP 1 Score: 68.2 bits (165), Expect = 1.970e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLVEMFRE 1033
            SC +CL  F + +E+R+LPCLH YH ACAD W    T+CP+C T++  +  E
Sbjct:  121 SCSICLAAFEDGDEIRMLPCLHPYHKACADQWLSNHTSCPVCKTDIKTLVSE 172
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A7S2PWC7_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PWC7_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 2.110e-9
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLVE 1021
             C VCLE F   EELR+LPCLHRYHL C D W   + +CP+C  ++ +
Sbjct:  104 KCMVCLESFAPGEELRILPCLHRYHLGCIDPWLAVNRHCPICKHDVTQ 151
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A812HE61_9DINO (Rlim protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HE61_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 4.220e-9
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLV 1018
            +C +C E F+EA+ LRLLPCLHRYH+ C D W G+S  CP+C  ++V
Sbjct:  411 ACAICCEHFVEADRLRLLPCLHRYHVLCIDRWLGQSQTCPVCKHSVV 457
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A1Q9DBG9_SYMMI (E3 ubiquitin-protein ligase RLIM n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DBG9_SYMMI)

HSP 1 Score: 69.3 bits (168), Expect = 6.080e-9
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLV 1018
            +C +C E F+EA+ LRLLPCLHRYH+ C D W G+S  CP+C   + 
Sbjct:  361 ACAICCEQFVEADHLRLLPCLHRYHVQCIDRWLGQSQTCPICKHTIT 407
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: A0A812U7X6_9DINO (RNF43 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812U7X6_9DINO)

HSP 1 Score: 66.2 bits (160), Expect = 6.730e-9
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 2 
Query:  881 CRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLV 1018
            C +CLE F E ++LR+LPC HRYH  C D W GRS  CPLC   + 
Sbjct:   35 CCICLEDFAEEQQLRILPCFHRYHQDCIDEWLGRSDECPLCKFRIT 80
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BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Match: L1JJJ9_GUITC (RING-type domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJJ9_GUITC)

HSP 1 Score: 62.0 bits (149), Expect = 6.800e-9
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:  878 SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNL 1015
            SC +CL  +   +++R+LPCLH YH ACAD W   S +CP+C TN+
Sbjct:    5 SCSICLVDYEVGDDVRMLPCLHAYHKACADEWLKCSHSCPVCKTNI 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig71.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y0A3_9STRA6.430e-2637.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1MG68_ALECA2.140e-1054.35Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2J5N4_9DINO2.960e-1056.52Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2NHW6_9DINO6.610e-1052.08Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S1HED0_HEMAN1.970e-948.08Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2PWC7_9DINO2.110e-952.08Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A812HE61_9DINO4.220e-955.32Rlim protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A1Q9DBG9_SYMMI6.080e-953.19E3 ubiquitin-protein ligase RLIM n=5 Tax=Symbiodin... [more]
A0A812U7X6_9DINO6.730e-954.35RNF43 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
L1JJJ9_GUITC6.800e-950.00RING-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig71contigP-wetherbeei_contig71:7018..8956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog9818.XP_007946147.1
Preferred nameZNRF3
PFAMszf-RING_2
Model size1639
Max annot lvl33208|Metazoa
KEGG koko:K16273
Hectar predicted targeting categoryother localisation
GOsGO:0001664,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005109,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005794,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016021,GO:0016055,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030163,GO:0030178,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032446,GO:0032801,GO:0035567,GO:0036211,GO:0038018,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0060070,GO:0060071,GO:0060828,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071944,GO:0072089,GO:0090090,GO:0090175,GO:0097708,GO:0140096,GO:0198738,GO:1901564,GO:1901565,GO:1901575,GO:1905114,GO:1905330,GO:2000026,GO:2000027,GO:2000050,GO:2000051
Exons2
Evalue7.18e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,39U26@33154|Opisthokonta,3BG3J@33208|Metazoa,3CYPA@33213|Bilateria,4818U@7711|Chordata,492ZP@7742|Vertebrata,3J7I2@40674|Mammalia,34VYW@311790|Afrotheria
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase ZNRF3
Cds size780
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.3512821-UTR-P-wetherbeei_contig71:7017..75991683186958.3512821-UTR-P-wetherbeei_contig71:7017..7599Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig71 7018..7599 -
1683186958.3766572-UTR-P-wetherbeei_contig71:8679..89561683186958.3766572-UTR-P-wetherbeei_contig71:8679..8956Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig71 8680..8956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.360883-CDS-P-wetherbeei_contig71:7599..77111683186958.360883-CDS-P-wetherbeei_contig71:7599..7711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig71 7600..7711 -
1683186958.3688178-CDS-P-wetherbeei_contig71:8011..86791683186958.3688178-CDS-P-wetherbeei_contig71:8011..8679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig71 8012..8679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig71.5.1prot_P-wetherbeei_contig71.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig71 7600..8679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig71.5.1

>prot_P-wetherbeei_contig71.5.1 ID=prot_P-wetherbeei_contig71.5.1|Name=mRNA_P-wetherbeei_contig71.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MGNKSSSSRSRPSTPPQQEQQAGGPARRASPAAAAGATGPGAAGAAAAAA
SNNAGLLRTTCPRCHTELLTPPAAPQFRCPCGVIFSRAGAAVGVAGPGQM
PLPPGGSVQLVVCSGCGRVGMLPQRQSVANLVCECGTAVRPATAEQLMAM
LARGSIPSIPAVSPPPRGVSPELLALLPVIPFRPPPPAEAALRDDDDDTV
SCRVCLEPFMEAEELRLLPCLHRYHLACADAWFGRSTNCPLCNTNLVEMF
RESAAAERR*
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mRNA from alignment at P-wetherbeei_contig71:7018..8956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig71.5.1 ID=mRNA_P-wetherbeei_contig71.5.1|Name=mRNA_P-wetherbeei_contig71.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1939bp|location=Sequence derived from alignment at P-wetherbeei_contig71:7018..8956- (Phaeothamnion wetherbeei SAG_119_79)
CAAAGCAAGCTTTAAATCACCAAAACACAGTCCATCAACAACTCGCGCAA
TTTCACAGTGAAAGCGTGGTAAGGGACGGTAGATTTTCCCGTCAAAGAGA
GGAAAGAATTCTACCACTCATAAGGACTCGCGCTGCAGTGTTGTAAGGCA
TCATCCCGTGATTAGGGGCAGCGCAGCATTCTTGTGAGAAGCCAGCGTCG
TCCGAAACAGGTCAAATAGGAGGCTCCAGATCTTCTTGATTAAAGAGAGC
TCCACGAGAGCTGCCGCCTTTTTGACAATGGGTAACAAGTCGAGTTCGTC
ACGCAGCCGACCAAGCACGCCGCCGCAGCAGGAGCAGCAGGCAGGTGGGC
CAGCAAGACGGGCCTCACCTGCAGCCGCAGCAGGAGCGACGGGGCCGGGG
GCAGCGGGAGCAGCAGCGGCTGCAGCGTCCAACAATGCGGGTCTCCTTCG
AACCACTTGCCCGCGTTGCCACACGGAGCTCTTGACGCCGCCGGCTGCTC
CCCAATTCCGCTGCCCGTGCGGGGTCATCTTCTCCCGTGCCGGCGCGGCT
GTTGGCGTGGCTGGGCCAGGACAAATGCCGCTCCCGCCAGGCGGGAGCGT
GCAACTCGTCGTCTGCTCCGGGTGCGGCCGCGTGGGAATGCTCCCGCAGC
GGCAAAGCGTCGCAAACTTGGTCTGCGAATGTGGCACGGCTGTGAGACCG
GCGACTGCGGAGCAACTGATGGCAATGCTCGCCCGCGGCAGCATTCCGAG
CATCCCGGCTGTTTCGCCGCCTCCGCGCGGCGTGTCGCCGGAACTGCTGG
CGCTGCTTCCCGTGATCCCGTTCCGGCCGCCGCCTCCCGCTGAGGCGGCG
TTGAGGGACGACGACGACGACACGGTCTCCTGCCGCGTCTGTCTCGAGCC
ATTTATGGAAGCAGAGGAGCTGCGGCTGCTGCCGTGCCTCCACAGGTGCG
TCAGTCATCTCGCAAAATTTTGTGTGTCGCCACATGCCGGCCTGCGTTTC
TCTCCCATTTCCGGGCGTGCCTGACGGGTTCCTTCCTCAGTTTTGCGTGC
AACCGATTGATTGATTTTTGAGGGCAGCCATCTTAGCGAGCCTTGTCGCT
TCGGTGGCAGCAACATGTCAATGGAGGAAAGTTGCAACACCGATTATGAC
GTACTTAGTGTGCTTCGTCCTCCTCTCAATGAAATGTGGTCAAGCCCTCC
TTCTTTCTCTGCGCCTCCTTTTGCATGGCGATTAAACGACTGTAGGTACC
ACCTGGCCTGCGCCGACGCGTGGTTCGGGCGTTCGACTAACTGCCCGCTA
TGTAACACCAATCTGGTCGAGATGTTCCGGGAGTCTGCCGCCGCGGAGCG
CCGATGACGGCGCTGCCGTTACGCTGTTGCGGCAGCTGTGCAGCGTCGGG
TGACGACGGCGCTGGCGGCGGCTGGTGGCGGCCTCAGCGCTAGCGGCAGC
TGGCGGCGGTCTCGGCAAAGGAAGTCGAAGGGACCGCTGCCTGTGATGCG
GTCGACGCGTTGGCAGCAGCTGGCACCGGTCCTGCTGCTGGTGGTGAACG
GCGCCATGGCGGCAGCGAGCGGCGAGGATGTGGTAAGGCAAGGGCTTTTT
GTGAAGCGGCAACTTGTTCTGGCTCCGGAAAGCGTTTGGGGTTGAGGTTG
GGGCCAATTCTTCCGTGGCGGATTGGTTGTTGGCCGGAGGGAGGCGGTCG
CTGACAGCGGCGAGCGGCGGCGCCCAACGCATTGCTCTCAGTTCCATCGC
GATTTGCATACACCTGATAGGGCTGTACATACTTAGGCAACAAAGAGGAC
GTTTCAGCGAACGTTAAAAGAAGAGCGAACGAGGGAAGCGAAAACGAAGG
GAGAGGGAGCGCTCCCTCGCTCCCCTTGTGCTGGCGGGCTCCGTCGGCCA
GCAGCCGGTAACAGTTAATAGCAGGCTACTATTGATTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig71:7018..8956-

>mRNA_P-wetherbeei_contig71.5.1 ID=mRNA_P-wetherbeei_contig71.5.1|Name=mRNA_P-wetherbeei_contig71.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig71:7018..8956- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAACAAGTCGAGTTCGTCACGCAGCCGACCAAGCACGCCGCCGCA
GCAGGAGCAGCAGGCAGGTGGGCCAGCAAGACGGGCCTCACCTGCAGCCG
CAGCAGGAGCGACGGGGCCGGGGGCAGCGGGAGCAGCAGCGGCTGCAGCG
TCCAACAATGCGGGTCTCCTTCGAACCACTTGCCCGCGTTGCCACACGGA
GCTCTTGACGCCGCCGGCTGCTCCCCAATTCCGCTGCCCGTGCGGGGTCA
TCTTCTCCCGTGCCGGCGCGGCTGTTGGCGTGGCTGGGCCAGGACAAATG
CCGCTCCCGCCAGGCGGGAGCGTGCAACTCGTCGTCTGCTCCGGGTGCGG
CCGCGTGGGAATGCTCCCGCAGCGGCAAAGCGTCGCAAACTTGGTCTGCG
AATGTGGCACGGCTGTGAGACCGGCGACTGCGGAGCAACTGATGGCAATG
CTCGCCCGCGGCAGCATTCCGAGCATCCCGGCTGTTTCGCCGCCTCCGCG
CGGCGTGTCGCCGGAACTGCTGGCGCTGCTTCCCGTGATCCCGTTCCGGC
CGCCGCCTCCCGCTGAGGCGGCGTTGAGGGACGACGACGACGACACGGTC
TCCTGCCGCGTCTGTCTCGAGCCATTTATGGAAGCAGAGGAGCTGCGGCT
GCTGCCGTGCCTCCACAGGTACCACCTGGCCTGCGCCGACGCGTGGTTCG
GGCGTTCGACTAACTGCCCGCTATGTAACACCAATCTGGTCGAGATGTTC
CGGGAGTCTGCCGCCGCGGAGCGCCGATGA
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