mRNA_P-wetherbeei_contig71.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig71.7.1
Unique NamemRNA_P-wetherbeei_contig71.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig71.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig71contigP-wetherbeei_contig71:8999..9778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size400
Hectar predicted targeting categoryother localisation
Exons3
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.0864758-UTR-P-wetherbeei_contig71:8998..90271683186958.0864758-UTR-P-wetherbeei_contig71:8998..9027Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig71 8999..9027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.0983667-CDS-P-wetherbeei_contig71:9027..90801683186958.0983667-CDS-P-wetherbeei_contig71:9027..9080Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig71 9028..9080 +
1683186958.1081223-CDS-P-wetherbeei_contig71:9190..92481683186958.1081223-CDS-P-wetherbeei_contig71:9190..9248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig71 9191..9248 +
1683186958.1193202-CDS-P-wetherbeei_contig71:9520..97781683186958.1193202-CDS-P-wetherbeei_contig71:9520..9778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig71 9521..9778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig71.7.1prot_P-wetherbeei_contig71.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig71 9028..9778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig71.7.1

>prot_P-wetherbeei_contig71.7.1 ID=prot_P-wetherbeei_contig71.7.1|Name=mRNA_P-wetherbeei_contig71.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MLTGMQGCRDSDAIARSRNDFNLFMSQLQKENPHLDQFRPGIRAPVSAPP
VVPGASCSPLYFDWPVVDKAAEKAPTEAERVARDIKALDAAGTHWKKAWA
ERFATGPVLTDQQINFRWPEETT
back to top

mRNA from alignment at P-wetherbeei_contig71:8999..9778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig71.7.1 ID=mRNA_P-wetherbeei_contig71.7.1|Name=mRNA_P-wetherbeei_contig71.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig71:8999..9778+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCGGCTTCTAGGCTGAAGAACGACATCATGCTTACCGGAATGCAAGGA
TGTCGTGACAGCGACGCGATCGCCCGGTCGAGGTCAGTGGGACGGGGCAG
AACGTAAACCTAAAACCCATTTTGAAAAATCAACCAACTGCCTGTCGTGC
TCTCCCTCCTTGGTATCGCCACCATGTCCGCCATTGCCGCAGGAATGATT
TCAACCTTTTCATGTCACAGCTGCAGAAGGAAAATCCGCACCTCGACCAG
GTGAGCGATTTTGAAGCCTTCACAAGGAGAGAGAGGGAGCATTTGACCAA
CATTTTTCGAAAGGGATTTTTCAAGGAGCCAGCGGAGGCCCTCGAAGGTT
GGCGGAGGCTGTTGCACACCTGCTGGCGTTCCTGCCGTTAGGTGGCGGCA
ACACTTCCTGATCTCAACCCTTCATAAGCTGGAGCAATCAAATGATCAAA
AAGTAACTCTTCGGGTGACGACACATAACGCTCCATCCTTCTGCGCACGT
GTCTCATTCGCCGCACGGACAGTTTCGGCCAGGTATACGCGCTCCTGTCT
CAGCCCCGCCAGTGGTCCCCGGTGCTTCGTGCTCGCCGCTGTATTTCGAC
TGGCCTGTCGTCGACAAAGCCGCGGAGAAGGCGCCGACGGAAGCGGAGCG
GGTGGCACGGGATATAAAGGCGTTAGATGCCGCAGGGACGCACTGGAAGA
AGGCATGGGCTGAGCGATTTGCGACGGGGCCGGTGCTGACTGACCAGCAA
ATCAACTTCAGATGGCCCGAAGAAACAACG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig71:8999..9778+

>mRNA_P-wetherbeei_contig71.7.1 ID=mRNA_P-wetherbeei_contig71.7.1|Name=mRNA_P-wetherbeei_contig71.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig71:8999..9778+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTACCGGAATGCAAGGATGTCGTGACAGCGACGCGATCGCCCGGTC
GAGGAATGATTTCAACCTTTTCATGTCACAGCTGCAGAAGGAAAATCCGC
ACCTCGACCAGTTTCGGCCAGGTATACGCGCTCCTGTCTCAGCCCCGCCA
GTGGTCCCCGGTGCTTCGTGCTCGCCGCTGTATTTCGACTGGCCTGTCGT
CGACAAAGCCGCGGAGAAGGCGCCGACGGAAGCGGAGCGGGTGGCACGGG
ATATAAAGGCGTTAGATGCCGCAGGGACGCACTGGAAGAAGGCATGGGCT
GAGCGATTTGCGACGGGGCCGGTGCTGACTGACCAGCAAATCAACTTCAG
ATGGCCCGAAGAAACAACG
back to top