prot_P-wetherbeei_contig709.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig709.3.1
Unique Nameprot_P-wetherbeei_contig709.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length609
Homology
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: D8LNZ8_ECTSI (60S ribosomal export protein NMD3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ8_ECTSI)

HSP 1 Score: 606 bits (1562), Expect = 7.470e-210
Identity = 340/611 (55.65%), Postives = 419/611 (68.58%), Query Frame = 0
Query:    5 IMAPGADATAGNDKASPVAAANRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRA-RQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEKEEVEEIG------RREAAAVETDYERFLQQLEADKEMRQQVNLYRRPAAGAGTAFGTRGVAAASALGTGASAMETGEDGGGSEADVEEVRLEELLDDLMLDXTSXXXXXXXXXXXXXXXXXXXXXXVFAAGAAPAPSQVWQGFGEDDPDL 608
            ++AP  D  A      P     ++PT+LCCMC + I PNPT MC  CI +Q+DITEGI  NLT++QCRGC+R+LRP WV   LESREL+A+CLRKISGLK VKL+DA+WIWTEPHSRRLK++LTVQKEV NGA++QQA VV FVVRNQQCDTC A+FT+NTW AVVQVRQRVDHKRTFFYLEQLILKHNAH+ C  ++T +DGMDF+FTE+S +A+FVDFLE VVP KVKHSKKL+SADNHSN FNF +TYLVT+ PVCK+DLVLLPKRLA  LG++ RL + QR+T A+  VDPLTAQTA+++ ++YWR+EFP LL S RL  +V LG EPLPE   P+AP R  R R+AR A V LARE DLG ND + TA +HLGH++RAGDT+L YD+++ANL E  G+A     G  +  +PDVV+V+K Y                         R W+L ELEK+  +         +R+ AA E DYERFLQQLE+DK+MR+QVNLY+            +G+AA  A   G  AME  E     E D EEVRL+ELLD + LD  +                      +F AGAAPAP+       +DDP+L
Sbjct:    3 VVAPPTDGLAAPPPPEPE---KQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKLTVQKEVGNGAVLQQAMVVTFVVRNQQCDTCAAAFTDNTWTAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFKDGMDFYFTEKSHSARFVDFLEGVVPTKVKHSKKLVSADNHSNIFNFHYTYLVTLVPVCKDDLVLLPKRLAESLGNISRLAVAQRITSAVQFVDPLTAQTADVTEEKYWRYEFPSLLSSTRLVPYVVLGTEPLPEKARPSAPRRGHRIRKARVAEVELARECDLGRNDDRVTAVSHLGHILRAGDTVLAYDVSSANLPE--GEAT----GDLKGRLPDVVLVRKVY-------------PRHDREGGGKADRHWKLGELEKDGGDXXXXXXVSEKRDEAAAEKDYERFLQQLESDKDMRRQVNLYK------------QGLAAKPAAADGDGAMEDVE-----EMDEEEVRLDELLDAMTLDNANAGPDGEEDLGAASAS-------IFEAGAAPAPNAEL--LLDDDPEL 565          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: A0A835ZB23_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB23_9STRA)

HSP 1 Score: 588 bits (1517), Expect = 1.910e-203
Identity = 321/546 (58.79%), Postives = 392/546 (71.79%), Query Frame = 0
Query:   17 DKASPVAAANRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRA---RQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEKEEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYRRPAAGAGTAFGTRGVAAASALGTGASAMETGEDGGGSEADVEEVRLEELLDDLMLD 559
            D   P +A   L TV CC+C   I+PNPT MC QCI +Q+DITEGI    TI+QCRGC R+L+P WV A LESREL+AICLRK+SGL  VKL+DA+W+WTE HSRRLKL+LTVQKEV NGAI+QQA +VEF VRNQQC  CQAS+TNNTWKAVVQ+RQRVDHKRTFFYLEQLILKHNAH N   V+T +DGMDFF+ ER+QAA+ + FLE+V+P ++K+SKKLISADNHSNT+NF +TYLVTVAPVCK+DLVLLP RLA  LG   RL +VQR+++ + LVDP+TAQTA+++ D Y RHEF  LL S RL  FV LG EPLP   LP+AP  A   R RRAR A VT+ARE DLG+ND Q TA +HLGHL++AGDT+L YD+ +ANL ED    L       +TA+PDVV+V+K Y   +G                   +RAWRL  LEK+   E+ +R+A A + DYERF+QQLEADKEMR+QVNL++  A GA                    A +TG     +E D E++R+EELLDD+ LD
Sbjct:    5 DVRPPPSALPELATVACCICSAPIKPNPTHMCVQCIRTQVDITEGIALKPTIFQCRGCMRWLKPNWVEATLESRELMAICLRKVSGLNRVKLVDASWVWTEAHSRRLKLKLTVQKEVQNGAILQQALIVEFTVRNQQCTECQASYTNNTWKAVVQIRQRVDHKRTFFYLEQLILKHNAHVNAINVQTHKDGMDFFYAERNQAARMLSFLESVIPCRIKNSKKLISADNHSNTYNFHYTYLVTVAPVCKDDLVLLPARLAETLGQFARLAVVQRISNGIALVDPVTAQTADVNVDHYARHEFVALLSSTRLVPFVVLGLEPLP---LPSAPTMAQGRRMRRARLAEVTVARECDLGANDTQFTAISHLGHLLKAGDTVLGYDVASANLPEDHLRGL-------KTALPDVVLVRKVYTSGAG-------------------KRAWRLEALEKDREAELSKRDADAHDADYERFMQQLEADKEMRRQVNLFKDLAIGA--------------------AAKTGGSDDDNEVDEEQIRVEELLDDMRLD 501          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: T0RPV6_SAPDV (60S ribosomal export protein NMD3 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0RPV6_SAPDV)

HSP 1 Score: 480 bits (1235), Expect = 4.450e-161
Identity = 246/477 (51.57%), Postives = 320/477 (67.09%), Query Frame = 0
Query:   28 LPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEK-EEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYR 503
            LP +LCCMC + I+ N   MC  C+  Q+D+TEGI K + ++QCRGC ++ RPPWVAA+LESRELLAICL+KISGL  VKL+DA W+WTEPHS+RLKL+LTVQKEV NGAI+QQ+FVV F+VRNQQCD CQASFTNN+WKAVVQVRQ+VDHKRTFFYLEQLILKH  H     +E+  DG+DFFF ER+ A +FVDFL   VP+K+K +KKLISADNHSNT N+ FTY V +A VCK+DLV LP +LA +LG++  LC+V +VT ++H++DP T Q AE+  D+YWR+ F  L  S +L  +  L + PL    L   P R   R+ R A + + R  D G ND +   TTHLG L+  GDT + YDL+ +   +     L  AG      +PDV++V+K +                       R R W+L+ +E  E    + + E    E DY+ FL +LE DKEMR ++N+Y+
Sbjct:    9 LPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPPWVAAELESRELLAICLKKISGLNKVKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSNPLQIPTLGGVPVRT-NRKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDSDTKPLDEAG----ITLPDVILVRKQF-----------------LRRVQKRSRNWKLKNIEGIESAVPVKKAEQTKTEMDYQHFLDELEDDKEMRSKINIYK 463          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: A0A7S2WJE1_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJE1_9STRA)

HSP 1 Score: 478 bits (1230), Expect = 1.190e-159
Identity = 270/545 (49.54%), Postives = 361/545 (66.24%), Query Frame = 0
Query:   22 VAAANRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWR------HEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEKEEVEEIGR-REAAAVETD---YERFLQQLEADKEMRQQVNLYRRPAAGAGTAFGTRGVAAASALGTGASAMETGEDGGGSEADVEEVRLEELLDDL 556
            VAA   L TVLCC CG  I  NP+ MCA C+  + DITEGI   L++++CRGC+R+LRP WV A+LES+EL+A+CLRKI GL  V L+DA WIWTEPHS RLK+++T+QKEV  GAI+QQ+FVVEFV+RNQQC+ CQ  +T+ TWKAVVQVRQRVDHKRTF+YLEQL+LKHN H+ C  +++ RDGMDF+F E+++A +F DFL+  +PV++K++KKLIS+DNHSN FNF FT+L  + P+CK+DL +LP RLA  L  +  L LV+RVT  +HLVDPLT   A   +D Y +        F  ++ + RL  ++ LG EP+  +    A  +  + + R A V +AR  DLG ND +    +HLGH++R GDT+L YD++AANL +DA  A          A+P+VV+V+K YG +S                   ++R W LR+LE + VEE  R R+   +E+D   YERF+QQLE DKEMR+ VNLYRR A       G R  AAA+        +E  E G   E D E+V ++ELL+ L
Sbjct:   10 VAATPGLATVLCCQCGNPIAANPSMMCAHCLSVRSDITEGIATQLSVHRCRGCERWLRPSWVTAELESKELMALCLRKIKGLSKVNLVDAQWIWTEPHSMRLKIKVTIQKEVDGGAILQQSFVVEFVIRNQQCEDCQKQYTDGTWKAVVQVRQRVDHKRTFYYLEQLLLKHNVHSRCISIQSFRDGMDFYFAEKNEAVRFTDFLQGNIPVRIKNTKKLISSDNHSNIFNFKFTFLCIIIPLCKDDLTVLPVRLAKTLSDISPLVLVERVTRLVHLVDPLTCDRATFDSDHYGKLTSGVESSFGGIMSAPRLIEYIVLGIEPILASERAGAASKVFKSKTRLAHVEVARASDLGVNDTKFHTVSHLGHILRTGDTVLGYDVSAANL-DDADVARIE----KRRALPEVVLVRKLYGVES-------------------QRRGWTLRKLEYDAVEEPTRTRKKDDMESDSADYERFIQQLEGDKEMRKHVNLYRREA-------GPRKAAAAAV-----DPLEEDE-GEEDEMDEEQVHIDELLEGL 517          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: A0A6G0XWA3_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWA3_9STRA)

HSP 1 Score: 465 bits (1197), Expect = 2.390e-155
Identity = 239/481 (49.69%), Postives = 323/481 (67.15%), Query Frame = 0
Query:   24 AANRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEKEEVEEIGRREAAAV-ETDYERFLQQLEADKEMRQQVNLYR 503
            A + LP +LCC+C + I+ N   MC  C+  Q+D+TEGI K + ++QCRGC ++ RP WV+A+LESRELLAICL+KI+GL  VKL+DA WIWTEPHS+RLKL+LTVQKEV NGAI+QQ+F+V F+VRNQQCD CQASFTN++WKAVVQVRQ+V+HKRTFFYLEQLILKH  H     +E+  DG+DFFF ER+ A +FVDFL+  VP+ +K +KKLISADNHSNT N+ FTY V +APVCK+DLV LP +LA +LG++  LCLV +VT ++H++DP T Q AE+  ++YWR+ F  L  S +L  +  L + P+ E  +    P    R+ R A + + R  D G ND +    +HLG L+  GDT + YDL  +   +     L  AG      +PDVV+V+K +                       RQR W+L+ +E   +E +G+++     + DYE FL  LE DKEMR ++N+Y+
Sbjct:    4 AEHSLPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSAELESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDECQASFTNHSWKAVVQVRQKVEHKRTFFYLEQLILKHRVHEKTTNIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIENEKYWRYPFKALRSSKQLTEYTVLDSTPM-EIPMKGGVPVRTNRKTRLAELEIVRNSDFGVNDTRFQTVSHLGMLLNVGDTAMGYDLVTSVFNDADTKPLDEAG----ITLPDVVLVRKQF-----------------LRRVQKRQRKWKLKTIEG--IESMGKKDDPTKHDLDYEHFLNDLEQDKEMRSRINIYK 460          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: W2I7I2_PHYPR (60S ribosomal export protein NMD3 n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2I7I2_PHYPR)

HSP 1 Score: 465 bits (1197), Expect = 2.550e-155
Identity = 248/481 (51.56%), Postives = 326/481 (67.78%), Query Frame = 0
Query:   26 NRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQ--RRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEK-EEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYR 503
            +++PT+LCCMC   I  N    C  C+ SQ+D+TEGI K + I+QCRGC R+ RPPWVAA+LESRELLA+CL+KI+ L  VKLIDA WIWTEPHSRRLKL+LTVQKEV +  I+QQ+FVV FVVRNQQCD CQASF N +W+AVVQVRQRVDHKRTFF+LEQLILKH AH     +E+  DG+DFFF+ER+ A +FVDFL+  VP+KVK +KKLISADNHSNT N+ FTY V +APVCK+DLVLLP +LA  LG+M  LCLVQ VT ++H+VDP T Q AE+ +++YWR+ F  L     +  F  L + P+    +P+   RA +  R+ R A + + R+ D G ND +    +HLG L+  GD+   YDLT+A   +     L  +G      +PDVV+V+K +                       R R W+L+++E  E+   + + + +  E DYE+FL +LE DKE+R Q+NLY+
Sbjct:    6 SQMPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVMSKMIMQQSFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVLLPVKLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFRALRSIKAMTDFTVLDSNPMA---IPSGGGRAIRVTRKTRLADMEVVRDADFGVNDTRFRTVSHLGMLLHVGDSARGYDLTSAVFNDADLVPLVQSG----MTLPDVVLVKKMF-----------------PRRIQKRARNWKLKKMEGVEQAGPVRKTDLSKEEQDYEQFLDELEEDKELRSQINLYK 462          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: A0A485KPH2_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPH2_9STRA)

HSP 1 Score: 465 bits (1196), Expect = 3.860e-155
Identity = 238/477 (49.90%), Postives = 319/477 (66.88%), Query Frame = 0
Query:   28 LPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEK-EEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYR 503
            LP +LCC+C + I+ N   MC  C+  Q+D+TEGI K + I+QCRGC ++ RPPWV+ADLESRELLAICL+KI+GL  VKL+DA WIWTEPHS+RLKL+LTVQKEV NGAI+QQ+F+V F+VRNQQCD CQASFTN++WKAVVQVRQ+V+HKRTFF+LEQLILKH  H     +E+  DG+DFFF ER+ A +FVDFL+  VP+ +K +KKLISADNHSNT N+ FTY+V +APVCK+DLV LP +LA +LG++  LCLV +VT ++H++DP T Q AE+  D+YWR  F  L  S +L  +  L + P+ E  +    P    R+ R A + + R  D G ND +    +HLG L+  GDT + YDL+ +   +     L  AG      +PDV++V+K +                       R R W+L+ +E  E    + + +    + DYE FL  LE DKEMR ++N+Y+
Sbjct:    9 LPNILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIIHQCRGCLKWSRPPWVSADLESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDECQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYMVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRSPFKALCSSKKLTEYTVLDSTPM-EIPVKGGVPVRTNRKTRLAELEVVRNVDFGVNDTRFQTVSHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAG----ITLPDVILVRKQF-----------------LRRVQKRSRKWKLKTIEGIEPAVPLKKADQTKQDLDYEHFLNDLEEDKEMRAKINIYK 463          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: A0A024UHG0_9STRA (60S ribosomal export protein NMD3 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UHG0_9STRA)

HSP 1 Score: 464 bits (1193), Expect = 1.090e-154
Identity = 239/479 (49.90%), Postives = 320/479 (66.81%), Query Frame = 0
Query:   26 NRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEK-EEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYR 503
            + LP +LCC+C + I+ N   MC  C+  Q+D+TEGI K + ++QCRGC ++ RP WV+ADLESRELLAICL+KI+GL  VKL+DA WIWTEPHS+RLKL+LTVQKEV NGAI+QQ+F+V F+VRNQQCD CQASFTN++WKAVVQVRQ+V+HKRTFF+LEQLILKH  H     +E+  DG+DFFF ER+ A +FVDFL+  VP+ +K +KKLISADNHSNT N+ FTY V +APVCK+DLV LP +LA +LG++  LCLV +VT ++H++DP T Q AE+  D+YWR+ F  L  S +L  +  L + PL  +     P R   R+ R A V + R  D G ND +    THLG L+  GDT + YDL+ +   +     L  AG     ++PDVV+V+K +                       R R W+L+ +E  E    + + +    + DYE FL  LE DK+MR ++N+Y+
Sbjct:    7 HELPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSADLESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLTEYTVLDSSPLEISTKGGIPVRT-NRKTRLADVDIVRNSDFGVNDMRFHTVTHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAG----ISLPDVVLVRKQF-----------------LRRVQKRSRKWKLKTIEGIEPTMPLKKADQTKHDLDYEHFLNDLEEDKDMRSRINIYK 463          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: A0A0P1APN2_PLAHL (60S ribosomal export protein NMD3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APN2_PLAHL)

HSP 1 Score: 463 bits (1191), Expect = 1.980e-154
Identity = 244/481 (50.73%), Postives = 329/481 (68.40%), Query Frame = 0
Query:   26 NRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQ--RRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEK-EEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYR 503
            + +PT+LCCMC   I  N    C  C+ SQ+D+TEGI K + I+QCRGC R+ RPPWVAADLESRELLA+CL+KI+ L  VKLIDA W+WTEPHSRRLKL+LTVQKEV +  I+QQAFVV FVVRNQQCD CQASF N +W+AVVQVRQRVDHKRTFF+LEQLILKH AH     +E+  DG+DFFF+ER+ A +FVDFL+  VP+KVK +KKLISADNHSNT N+ FTY V +APVCK+DLV+LP +LA  LG++  LCL+Q VT ++H+VDP T Q AE+ +++YWR+ F  L     +++F  L + P+    +P+   RA +  R+ R A + + R+ D G ND +    +HLG ++ AGD+   YDLT+A   +     L  +G     ++PDVV+V+K +                       R R W+L+++E  E+   + + + +  E DYE+FL +LE +K++R Q+NLY+
Sbjct:    3 SHMPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAADLESRELLALCLKKITNLNRVKLIDANWVWTEPHSRRLKLKLTVQKEVLSKMIMQQAFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVVLPVKLARMLGNISCLCLIQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFHALRSIKAMSNFTILDSSPMA---IPSGGGRAIRVSRKTRLADLEIVRDVDFGVNDTRFRTVSHLGMILHAGDSARGYDLTSAVFNDADLVPLVQSG----ISMPDVVLVKKTF-----------------PSRIQKRTRNWKLKKIEGVEQAGTVRKTDLSKEEQDYEQFLDELEENKDLRSQINLYK 459          
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Match: D0MSQ0_PHYIT (60S ribosomal export protein NMD3 n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0MSQ0_PHYIT)

HSP 1 Score: 463 bits (1191), Expect = 2.190e-154
Identity = 247/481 (51.35%), Postives = 325/481 (67.57%), Query Frame = 0
Query:   26 NRLPTVLCCMCGIGIRPNPTGMCAQCIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKISGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVRNQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGKVETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFNFSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPLTAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRARQ--RRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANLAEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGXXXXXXXXXXXXXXXXXXRQRAWRLRELEK-EEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVNLYR 503
            +++PT+LCCMC   I  N    C  C+ SQ+D+TEGI K + I+QCRGC R+ RPPWVAA+LESRELLA+CL+KI+ L  VKLIDA WIWTEPHSRRLKL+LTVQKEV +  I+QQ+FVV FVVRNQQCD CQASF N +W+AVVQVRQRVDHKRTFF+LEQLILKH AH     +E+  DG+DFFF+ER+ A +FVDFL+  VP+KVK +KKLISADNHSNT N+ FTY V +APVCK+DLVLLP +LA  LG+M  LCLVQ VT ++H+VDP T Q AE+ +++YWR+ F  L     +     L + P+    +P+   RA +  R+ R A + + R+ D G ND +    +HLG L+  GD+   YDLT+A   +     L  +G      +PDVV+V+K +                       R R W+L+++E  E+   + + + +  E DYE+F+ +LE DKEMR Q+NLY+
Sbjct:    6 SQMPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVLSKMIMQQSFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVLLPVKLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEVDSEKYWRYPFRALRSIKAMTDLTVLDSNPMA---IPSGGGRAIRVTRKTRLADMEVVRDADFGVNDTRFRTVSHLGMLLHVGDSARGYDLTSAVFNDADLVPLVQSG----LTLPDVVLVKKMF-----------------PRRIQKRARNWKLKKMEGVEQAGPVRKADLSKEEQDYEQFMDELEEDKEMRSQINLYK 462          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig709.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ8_ECTSI7.470e-21055.6560S ribosomal export protein NMD3 n=2 Tax=Ectocarp... [more]
A0A835ZB23_9STRA1.910e-20358.7960S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
T0RPV6_SAPDV4.450e-16151.5760S ribosomal export protein NMD3 n=4 Tax=Saproleg... [more]
A0A7S2WJE1_9STRA1.190e-15949.5460S ribosomal export protein NMD3 n=1 Tax=Rhizochr... [more]
A0A6G0XWA3_9STRA2.390e-15549.6960S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
W2I7I2_PHYPR2.550e-15551.5660S ribosomal export protein NMD3 n=9 Tax=Peronosp... [more]
A0A485KPH2_9STRA3.860e-15549.9060S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
A0A024UHG0_9STRA1.090e-15449.9060S ribosomal export protein NMD3 n=7 Tax=Aphanomy... [more]
A0A0P1APN2_PLAHL1.980e-15450.7360S ribosomal export protein NMD3 n=1 Tax=Plasmopa... [more]
D0MSQ0_PHYIT2.190e-15451.3560S ribosomal export protein NMD3 n=18 Tax=Peronos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007064Nmd3, N-terminalPFAMPF04981NMD3coord: 33..258
e-value: 3.0E-77
score: 259.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 434..457
NoneNo IPR availablePANTHERPTHR12746:SF260S RIBOSOMAL EXPORT PROTEIN NMD3coord: 24..558
IPR039768Ribosomal export protein Nmd3PANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 24..558

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig709contigP-wetherbeei_contig709:4788..7916 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig709.3.1mRNA_P-wetherbeei_contig709.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig709 4464..7964 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig709.3.1 ID=prot_P-wetherbeei_contig709.3.1|Name=mRNA_P-wetherbeei_contig709.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=609bp
MATMIMAPGADATAGNDKASPVAAANRLPTVLCCMCGIGIRPNPTGMCAQ
CIHSQIDITEGIGKNLTIYQCRGCKRFLRPPWVAADLESRELLAICLRKI
SGLKNVKLIDATWIWTEPHSRRLKLRLTVQKEVANGAIIQQAFVVEFVVR
NQQCDTCQASFTNNTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHANCGK
VETLRDGMDFFFTERSQAAKFVDFLENVVPVKVKHSKKLISADNHSNTFN
FSFTYLVTVAPVCKNDLVLLPKRLAAELGSMPRLCLVQRVTDALHLVDPL
TAQTAELSADRYWRHEFPPLLGSGRLASFVALGAEPLPEARLPAAPPRAR
QRRARRAAVTLAREDDLGSNDRQSTATTHLGHLIRAGDTLLCYDLTAANL
AEDAGDALAGAGGGSETAVPDVVVVQKCYGGDSGDGGGSSGGNGGGSGGI
SGRQRAWRLRELEKEEVEEIGRREAAAVETDYERFLQQLEADKEMRQQVN
LYRRPAAGAGTAFGTRGVAAASALGTGASAMETGEDGGGSEADVEEVRLE
ELLDDLMLDDTSAPPDDASAAASAASAAADGAAAVFAAGAAPAPSQVWQG
FGEDDPDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007064Nmd3_N
IPR039768Nmd3