mRNA_P-wetherbeei_contig7083.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7083.2.1
Unique NamemRNA_P-wetherbeei_contig7083.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7083contigP-wetherbeei_contig7083:1450..2504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1055
Hectar predicted targeting categoryother localisation
Exons1
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.928951-UTR-P-wetherbeei_contig7083:1449..19191683186956.928951-UTR-P-wetherbeei_contig7083:1449..1919Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7083 1450..1919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.9384596-CDS-P-wetherbeei_contig7083:1919..25041683186956.9384596-CDS-P-wetherbeei_contig7083:1919..2504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7083 1920..2504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7083.2.1prot_P-wetherbeei_contig7083.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7083 1920..2504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7083.2.1

>prot_P-wetherbeei_contig7083.2.1 ID=prot_P-wetherbeei_contig7083.2.1|Name=mRNA_P-wetherbeei_contig7083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MPNSGKALQHREKVAVVKDEPTSTGPENSAPLAATGYYPSMLMFSTGIFD
SIGDSKPVPGAVVTPAKGESEKVSPTAPVAVLHGGSSSENQNSSPGKVLH
ASSSAGNTGAGGGTGGGGGGRRHGSYGHRNQYDPARAPLDDTGTAGNYSG
PRHLRKSAASIGGGSSSSGGAASTVPTAVHYNGGYSMAGSQPLYG
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mRNA from alignment at P-wetherbeei_contig7083:1450..2504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7083.2.1 ID=mRNA_P-wetherbeei_contig7083.2.1|Name=mRNA_P-wetherbeei_contig7083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1055bp|location=Sequence derived from alignment at P-wetherbeei_contig7083:1450..2504+ (Phaeothamnion wetherbeei SAG_119_79)
CACGAACGTCAACGAAACGAAATCGAGCCGTTTCCGATAATACTTACACT
GTTAGCTTTATTCTTTCTGTCTGCAGATTGTGATGCCAAAGAAGCCTCAA
GACTAGCGTTCTCCCATGCCAAACCGCACTAGGTGAAGGTAAAAGTCACG
AAAGGGCGCAGGTCAAGCGACGACCACTCGTTTTAAAGGATAGAGCGTCC
TATTTCTCCCGCTTGTCTTGCGATCTCGTACTTTGGGAGGCTATTAGGCG
ATTTGGGAGAGGAGAAGCAGTAATCGAGCTGTGAGGCATCTCAAGCACTG
TATTCTCGACGGATCCTGCGCGTTTGATCGCCGCTGAAGACGAGGGGTAT
TTTCTCTCATCGCCGCTCTTTCTTCCAACCGGTGAACGCAAAGGCCGACG
CAGCCGTACGGATTAGGGGACGACGGCGCCGAATCCCCTTTCAGAGGGGA
GTGGACAGTACCTCAGCGCCATGCCTAACAGCGGCAAGGCTTTACAGCAC
CGGGAAAAGGTGGCAGTGGTGAAGGACGAGCCGACTTCAACAGGGCCGGA
GAACAGCGCCCCCCTCGCGGCGACGGGCTACTACCCGTCCATGCTGATGT
TCTCCACCGGCATCTTCGACTCCATCGGGGATTCGAAGCCGGTGCCCGGT
GCCGTGGTCACGCCGGCGAAGGGGGAATCCGAAAAGGTTTCCCCTACCGC
ACCAGTCGCCGTGTTGCACGGCGGTTCCTCGAGCGAGAACCAGAACTCGT
CCCCTGGCAAAGTCCTGCATGCGTCGAGCAGCGCGGGCAACACGGGAGCC
GGCGGGGGCACCGGGGGCGGTGGCGGCGGCCGCCGGCACGGCAGCTATGG
CCACCGGAACCAGTACGATCCCGCAAGGGCACCGCTGGATGACACTGGCA
CTGCAGGGAACTACTCGGGTCCGCGGCACCTCCGGAAAAGCGCCGCGTCC
ATCGGCGGGGGCTCCAGCAGCAGCGGCGGCGCCGCAAGCACCGTGCCGAC
CGCCGTCCATTATAACGGCGGCTACAGCATGGCCGGCTCGCAGCCGCTCT
ATGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7083:1450..2504+

>mRNA_P-wetherbeei_contig7083.2.1 ID=mRNA_P-wetherbeei_contig7083.2.1|Name=mRNA_P-wetherbeei_contig7083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig7083:1450..2504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTAACAGCGGCAAGGCTTTACAGCACCGGGAAAAGGTGGCAGTGGT
GAAGGACGAGCCGACTTCAACAGGGCCGGAGAACAGCGCCCCCCTCGCGG
CGACGGGCTACTACCCGTCCATGCTGATGTTCTCCACCGGCATCTTCGAC
TCCATCGGGGATTCGAAGCCGGTGCCCGGTGCCGTGGTCACGCCGGCGAA
GGGGGAATCCGAAAAGGTTTCCCCTACCGCACCAGTCGCCGTGTTGCACG
GCGGTTCCTCGAGCGAGAACCAGAACTCGTCCCCTGGCAAAGTCCTGCAT
GCGTCGAGCAGCGCGGGCAACACGGGAGCCGGCGGGGGCACCGGGGGCGG
TGGCGGCGGCCGCCGGCACGGCAGCTATGGCCACCGGAACCAGTACGATC
CCGCAAGGGCACCGCTGGATGACACTGGCACTGCAGGGAACTACTCGGGT
CCGCGGCACCTCCGGAAAAGCGCCGCGTCCATCGGCGGGGGCTCCAGCAG
CAGCGGCGGCGCCGCAAGCACCGTGCCGACCGCCGTCCATTATAACGGCG
GCTACAGCATGGCCGGCTCGCAGCCGCTCTATGGT
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