mRNA_P-wetherbeei_contig708.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig708.3.1
Unique NamemRNA_P-wetherbeei_contig708.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig708.3.1 vs. uniprot
Match: A0A835Z6B8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.040e-43
Identity = 74/121 (61.16%), Postives = 98/121 (80.99%), Query Frame = 2 
Query:  881 SLEKHKRELRRRDRKVADLEHSVADGEATANSLHAQQRQLFDKFCLLRQKYDGIKAHLREVLWDFLPSRSIPGVENHGPAWIDSIPALDKTVVETADRIGCYELMETLGEGQFAAVRALRV 1243
            ++E+++RELRRR+ ++A+LE   A+G+AT  S HAQQR LFDKFC LRQKYDG+KAHLREVLWD++PS  IP VE  GPAW+++IP +D+++ E  DR+G Y L E LGEGQFAAVR +R+
Sbjct:    2 AVERYRRELRRREARIAELEKVAAEGQATVTSFHAQQRALFDKFCTLRQKYDGVKAHLREVLWDYIPSCRIPAVEGRGPAWLEAIPEVDRSLAEDKDRVGPYLLGEVLGEGQFAAVRGVRM 122
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BLAST of mRNA_P-wetherbeei_contig708.3.1 vs. uniprot
Match: A0A4D9D5N6_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5N6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.630e-8
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 2 
Query:  866 AALTASLEKHKRELRRRDRKVADLEHSVADGEATANSLHAQQRQLFDKFCLLRQKYDGIKAHLREVLWDFLPSR-----SIP-------------GVENHGPAWIDSIPALDKTVVETADRIGCYELMETLGEGQFAAVRA 1234
            A + A+L +    LR R   +A++E  +         L   Q+QL++ F LLR+KYD  KA++ EVLW FLPS      SIP             G E H      S P   + +VET  ++G Y +   LGEGQFA V A
Sbjct:  224 AMMLATLNEENAMLRYR---LAEVEGKLKGSSDNVKCLQKCQKQLYNDFVLLREKYDEAKANIAEVLWGFLPSTTSSFPSIPPMHVSPEEHQQYLGYEEHRQHRQPSHPTPAR-LVETEAQVGPYRVGRLLGEGQFAKVFA 360
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BLAST of mRNA_P-wetherbeei_contig708.3.1 vs. uniprot
Match: A0A482SW11_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SW11_9ARCH)

HSP 1 Score: 59.7 bits (143), Expect = 2.430e-6
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  938 EHSVADGEATANSLHAQQRQLFDKFCLLRQKYDGIKAHLREVLWD----FLPS-RSIPGVENHGPAWIDSIPALDKTVVETADRIGCYELMETLGEGQFAAVR 1231
            E +     +T  +LH QQ+ LFD+F LLRQ+YD  KA    +LW+    + P  R IP +++              T  ET +RIG   + + LGEGQFA V+
Sbjct:   78 EEAAQKAVSTIQTLHKQQKDLFDEFVLLRQRYDEQKAATVTILWNQCAKYHPDLRQIPSMQD------------THTFTETDERIGNLIVGDFLGEGQFATVK 168
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BLAST of mRNA_P-wetherbeei_contig708.3.1 vs. uniprot
Match: A0A7S3HK97_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK97_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.950e-6
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 2 
Query:  905 LRRRDRKVADLEHSVADGEATANSLHAQQRQLFDKFCLLRQKYDGIKAHLREVLWD----FLPS-RSIPGVENHGPAWIDSIPALDKTVVETADRIGCYELMETLGEGQFAAVR 1231
            L  ++++  + E S A    +  +   QQ+QLFD+F LLRQ+YD  K     +LW     F P  R IP  ++             K   ET D+IG Y + E LGEGQFA V+
Sbjct:   68 LHAKEKEHREAEESAAKALLSIQTFQMQQKQLFDEFVLLRQRYDEQKFATISILWTHCTKFHPDLRMIPDQKD------------PKIFAETEDQIGEYRVGEPLGEGQFATVK 169
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BLAST of mRNA_P-wetherbeei_contig708.3.1 vs. uniprot
Match: K8Z8Q7_NANGC (Cbl-interacting serine threonine-protein kinase 9 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8Q7_NANGC)

HSP 1 Score: 59.7 bits (143), Expect = 6.940e-6
Identity = 41/100 (41.00%), Postives = 52/100 (52.00%), Query Frame = 2 
Query:  989 QRQLFDKFCLLRQKYDGIKAHLREVLWDFLPSR-----SIP-------------GVENHGPAWIDSIPALDKTVVETADRIGCYELMETLGEGQFAAVRA 1234
            Q+QL++ F LLR+KYD  KA++ EVLW FLPS      SIP             G E        S P +   +VET  ++G Y +   LGEGQFA V A
Sbjct:  276 QKQLYNDFVLLREKYDEAKANIAEVLWGFLPSTTSSFPSIPPMHVSPEEHQQYLGYEEQRQHRQPSHP-VPARLVETEAQVGPYRVGRLLGEGQFAKVFA 374
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig708.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z6B8_9STRA4.040e-4361.16Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A4D9D5N6_9STRA6.630e-836.17Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A482SW11_9ARCH2.430e-636.89Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A7S3HK97_9STRA2.950e-635.96Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
K8Z8Q7_NANGC6.940e-641.00Cbl-interacting serine threonine-protein kinase 9 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig708contigP-wetherbeei_contig708:2203..4397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T014242
PFAMsPkinase
Model size1270
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.25e-08
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota,1MABS@121069|Pythiales
DescriptionProtein tyrosine kinase
Cds size981
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.6793447-CDS-P-wetherbeei_contig708:2202..24421683186956.6793447-CDS-P-wetherbeei_contig708:2202..2442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig708 2203..2442 -
1683186956.6909058-CDS-P-wetherbeei_contig708:2690..28581683186956.6909058-CDS-P-wetherbeei_contig708:2690..2858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig708 2691..2858 -
1683186956.7037911-CDS-P-wetherbeei_contig708:3250..37421683186956.7037911-CDS-P-wetherbeei_contig708:3250..3742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig708 3251..3742 -
1683186956.7169528-CDS-P-wetherbeei_contig708:4027..41081683186956.7169528-CDS-P-wetherbeei_contig708:4027..4108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig708 4028..4108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.7298567-UTR-P-wetherbeei_contig708:4108..43971683186956.7298567-UTR-P-wetherbeei_contig708:4108..4397Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig708 4109..4397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig708.3.1prot_P-wetherbeei_contig708.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig708 2203..4108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig708.3.1

>prot_P-wetherbeei_contig708.3.1 ID=prot_P-wetherbeei_contig708.3.1|Name=mRNA_P-wetherbeei_contig708.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
MITVSCTGVSPERVRAILEAGLGAAHKITVLDVADDDPATNVSAAVSWAD
SSDSVAAVGDLVKQLHVSVGSRPSKVENAVPVRYGAQRPVGSPEKEPRGG
ARQPSTPRGEGGGVPPPSPPRSPLRNNQQTQLLSPCGSPRCGKGRSNEAF
DLKRRTPSPPMPRKDTGFVGGGGGGDENADDQPSTAALQSRIAALTASLE
KHKRELRRRDRKVADLEHSVADGEATANSLHAQQRQLFDKFCLLRQKYDG
IKAHLREVLWDFLPSRSIPGVENHGPAWIDSIPALDKTVVETADRIGCYE
LMETLGEGQFAAVRALRVAWPESGAPP
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mRNA from alignment at P-wetherbeei_contig708:2203..4397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig708.3.1 ID=mRNA_P-wetherbeei_contig708.3.1|Name=mRNA_P-wetherbeei_contig708.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2195bp|location=Sequence derived from alignment at P-wetherbeei_contig708:2203..4397- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGACGAGTGAAGGTTTAGAGAACGCTGCCGGGAATAACCAACGGTGC
AGCTACATACAGAAGCCCCTCACGTGTTTGTACCCGACGCAGCACCCTCT
CGTCGGGAAGGAAGCCAATTCTCCCTCCTTTGCCGTTGCTCCAAAACCTT
TCGGACTACATTCGGGGCGGAGAACGGGGGCGCCGGGCGCTGTCTTGCCC
CAGCCGATAATCTGAGGGATTCGGTCGACCGAGGAGTGCCGAATCTCTCG
GAACCTCCTCGGGAGGCCGCCCCAGGCCGACTGCACGCCATGATCACCGT
CAGTTGCACAGGTGTATCGCCCGAGCGCGTCCGCGCCATCCTCGAGGCCG
GCCTGGGAGCCGCACACAAGGTGATACTCTCCCATTTGACACCGTCGAAT
CGGCCACGCCGGCGCCGGCAACTGTGTTTTTCATTGATCTCCTTGGTGCT
GGCGGTTTTGGAAGATTGACACAAGTCTTTTTCAAAGGAACAGCTCCGCG
TTGGAGATGCTGTTGCCTCAAGCCAGGCGAGAGCTGCGTTCATAGCTCGG
CCGATCGTCGCTTGCGAACGGCCATGCGGAGATTTTACCCAAATGTCGGT
GCTCTAAACTGGTTCTCCGCGTTCTGCATGTGCGGCCCCCTCTCGCGCTC
TCCAGATCACAGTTCTCGACGTCGCCGACGACGACCCGGCCACGAACGTC
TCCGCCGCCGTCTCCTGGGCCGACAGCAGCGACAGCGTCGCTGCTGTCGG
CGACTTGGTGAAGCAGCTCCATGTATCCGTCGGTTCCCGGCCGAGCAAGG
TTGAAAACGCCGTCCCCGTCCGGTACGGGGCGCAACGGCCAGTCGGTTCT
CCCGAGAAAGAGCCGCGCGGCGGCGCGCGGCAGCCGTCGACGCCCAGAGG
GGAAGGAGGTGGCGTGCCGCCACCGTCACCACCGCGTTCACCGCTCCGAA
ATAACCAGCAGACGCAGCTGCTGAGCCCATGCGGGTCGCCGCGGTGCGGC
AAAGGGCGATCGAACGAGGCGTTCGACCTGAAGAGGCGCACCCCGTCGCC
GCCGATGCCTCGGAAAGACACCGGCTTCGTCGGTGGAGGTGGCGGTGGCG
ACGAGAATGCGGACGATCAACCCAGTACGGCGGCCCTCCAAAGCCGAGTG
AGTTGCTTGCATGAAATCTTTCCGGCCCGGTCGTGGCGGTGCGGTTATTT
GATGAATGCTGCGCGGCACTGTGATGCCTGATACATGGGTGGAGTGCCTA
CGTGCTTTTGTGTTCCGACCCACCAGGATTCTATCAATGGGCTGCAGGAG
GCACGGCCTTGTTAGGCTGCCGCTTATTGGAGCCGGCAAAGGCGTTCGGG
GGGCGAAGCGCCCTTCGGTTATCATCTCGCCTTTGTTACACCGTGATCCG
CTGGCCTTCCTTCTCCCCTTTTTTTATTGTTTGGCGTCTTGCCGGGCACA
TGTAGCGCGCTCTAAACGGCTCTCTTCTCCCCCTCGAATTGACACTCGCT
TCCCTTTCCGATTTCTCCATCTCGATCTCTCCTCGGCAGATTGCGGCGCT
GACGGCGTCGTTGGAAAAGCACAAGCGGGAGCTGCGGCGGCGGGACCGCA
AGGTGGCGGACCTCGAGCACTCCGTAGCGGACGGGGAGGCCACCGCCAAC
TCGCTGCACGCGCAGCAGCGGCAGCTTTTTGACAAGTTTTGCCTGCTGCG
CCAAAAGGTGAGAGGCCCCTCCATCCGGCCAACTGCCGTCCGTCGCTCGG
TTTTGTCACCGCCGCGGCAGGGAGTTTCCTTTAAAAGCGGCAGCGATTTG
CTGGGCAGCGGGACCGTGCATCGCGCTATTCCCGCAACGTTCCAGTGAAA
CGTGCCCCGGATTTTCAACATTCAAGTCGCCGTTCACGGGCACCACTAAA
CACCCCGCAAAATCCTCAAGTCATTTCCGCCTCGCCGTTATTTCCCGCCA
CGCAGTACGACGGCATCAAAGCCCACCTGCGGGAGGTCCTTTGGGACTTC
CTGCCGTCCCGCAGCATCCCCGGCGTTGAGAACCACGGCCCGGCCTGGAT
CGACTCGATCCCCGCTCTCGACAAAACAGTTGTCGAGACCGCAGACCGCA
TCGGCTGCTACGAGCTCATGGAGACGCTTGGCGAGGGTCAGTTCGCCGCC
GTGCGCGCGCTGCGCGTGGCCTGGCCTGAGAGCGGCGCGCCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig708:2203..4397-

>mRNA_P-wetherbeei_contig708.3.1 ID=mRNA_P-wetherbeei_contig708.3.1|Name=mRNA_P-wetherbeei_contig708.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig708:2203..4397- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACCGTCAGTTGCACAGGTGTATCGCCCGAGCGCGTCCGCGCCAT
CCTCGAGGCCGGCCTGGGAGCCGCACACAAGATCACAGTTCTCGACGTCG
CCGACGACGACCCGGCCACGAACGTCTCCGCCGCCGTCTCCTGGGCCGAC
AGCAGCGACAGCGTCGCTGCTGTCGGCGACTTGGTGAAGCAGCTCCATGT
ATCCGTCGGTTCCCGGCCGAGCAAGGTTGAAAACGCCGTCCCCGTCCGGT
ACGGGGCGCAACGGCCAGTCGGTTCTCCCGAGAAAGAGCCGCGCGGCGGC
GCGCGGCAGCCGTCGACGCCCAGAGGGGAAGGAGGTGGCGTGCCGCCACC
GTCACCACCGCGTTCACCGCTCCGAAATAACCAGCAGACGCAGCTGCTGA
GCCCATGCGGGTCGCCGCGGTGCGGCAAAGGGCGATCGAACGAGGCGTTC
GACCTGAAGAGGCGCACCCCGTCGCCGCCGATGCCTCGGAAAGACACCGG
CTTCGTCGGTGGAGGTGGCGGTGGCGACGAGAATGCGGACGATCAACCCA
GTACGGCGGCCCTCCAAAGCCGAATTGCGGCGCTGACGGCGTCGTTGGAA
AAGCACAAGCGGGAGCTGCGGCGGCGGGACCGCAAGGTGGCGGACCTCGA
GCACTCCGTAGCGGACGGGGAGGCCACCGCCAACTCGCTGCACGCGCAGC
AGCGGCAGCTTTTTGACAAGTTTTGCCTGCTGCGCCAAAAGTACGACGGC
ATCAAAGCCCACCTGCGGGAGGTCCTTTGGGACTTCCTGCCGTCCCGCAG
CATCCCCGGCGTTGAGAACCACGGCCCGGCCTGGATCGACTCGATCCCCG
CTCTCGACAAAACAGTTGTCGAGACCGCAGACCGCATCGGCTGCTACGAG
CTCATGGAGACGCTTGGCGAGGGTCAGTTCGCCGCCGTGCGCGCGCTGCG
CGTGGCCTGGCCTGAGAGCGGCGCGCCGCCC
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