mRNA_P-wetherbeei_contig7073.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7073.1.1
Unique NamemRNA_P-wetherbeei_contig7073.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7073.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7073contigP-wetherbeei_contig7073:3..3209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3177
Hectar predicted targeting categoryother localisation
Exons2
Cds size2595
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.3141932-CDS-P-wetherbeei_contig7073:2..25971683186956.3141932-CDS-P-wetherbeei_contig7073:2..2597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7073 3..2597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.3252342-UTR-P-wetherbeei_contig7073:2597..26161683186956.3252342-UTR-P-wetherbeei_contig7073:2597..2616Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7073 2598..2616 -
1683186956.341226-UTR-P-wetherbeei_contig7073:2647..32091683186956.341226-UTR-P-wetherbeei_contig7073:2647..3209Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7073 2648..3209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7073.1.1prot_P-wetherbeei_contig7073.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7073 3..2597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7073.1.1

>prot_P-wetherbeei_contig7073.1.1 ID=prot_P-wetherbeei_contig7073.1.1|Name=mRNA_P-wetherbeei_contig7073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=865bp
MEVTVCGAVQLRRVMADAQGSAGHQRHGRSSGSSNSAAAAAALTRAAMAA
AGRAGVLCARLDAAAGFARVALHPSADGRRRSGGGSGSGSGSGGRNGGGD
GGGGGGGGNFKGGITAGRTALAHVAELPLAALFATPSAAETQWRDVDTGS
LVRVAGTDWLAHVAAHATFSGAFAALGTAGAVAATFADPRLAEREAVVVQ
KAWRVGDGFGGNSGGGENAGLGGDGGGGGGSKANGTGWLRVRTAAGIEGD
VPVQAITILAPPPPPHGSEKSRAAEARASKASCPLAIAGMGRVAVGTTAA
VKAQRTARDHTKLRGSSRDDTAASRSDGAAEMLNSRPPPALSSAFRARGI
RVPAPAAAIASEEGTEGDREMAAPAPRNGGGDVTVISAGAGRIRGGSASA
TGSAGADATSRSAHGVRLGTTVAARLRRPLFREDAVATAAATSATSAPAL
AASAAAMDFGYRLDGGTASEQRLQQQQQLLQLSGDRAAATGGPGKAFTGA
RTAAAIAAAAAAAALRRDGRERGAAGPGAGVSEGAGKERNSAKDVRGASL
AAPPMSGSQLPQPSPFLQPLQLEAGRQRLRSGTGARVSSDVKGGGSKAGA
VALHEAGIYFALPLPARTSAAAAVRRPNIGRPRAAVAATAAAATAAIGPT
IPVSAASAAAAVAGAARPAPAPPPQPQPWRPGGSGLPVRPEEDIATVRAR
NHRVARAVARENAARREAELSGWQRLFFPAAGGFSAASGAAAGSRGGSRN
ASRNGSGGGGGGASGLLFDPKAWLAKHRKEQEAQAVAAAVLSAALRQPEE
QKDGELHGGGGKGGGGGGGNAAGVSDQLHQQQEVLPSEEAVLINDGVQAV
IDSLLRGRLRRPGRR
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mRNA from alignment at P-wetherbeei_contig7073:3..3209-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7073.1.1 ID=mRNA_P-wetherbeei_contig7073.1.1|Name=mRNA_P-wetherbeei_contig7073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3207bp|location=Sequence derived from alignment at P-wetherbeei_contig7073:3..3209- (Phaeothamnion wetherbeei SAG_119_79)
GGTAACGGATTTCTGACAGCAATCCGGGACATGGCAGATACTGCCAAAGA
TACAAAAACCACTGGGGAAAAAGCAGCAGTTGCCTATGCAGACACTGGGT
TTCTGCTCTCCAGCGCCAAGCCGTCGGTGTTTCGCGTGCGCGCACGATGC
CAGCTGGTCGCGGCGGGTTGGCTGGCGTGCTGGGAGGCAACAGGAATGCT
GCCGCCTCCCCTGCCGCTTCCCATGGGGCGCAGCGGCGGCACCGGCGGCG
GCGGAAGCAGCAGCCGGAAAGCCACCGCCGAAGCAGAGCGCGCGGTTCTG
GGAGAGCGGCTTCAAGCTGTGCTTGCGCCGTCGCAGCCACGGCGGCCGCA
TTCTGCTGCAGCGGTGGCGGCAGCGGCGGTGGTGGCGGCTGTCGGATCCG
CTCAGCATGCTGACGAGCGGGAAACACACACAGACAGGGCGAAAAACCAG
AACTGCGTCGATTGCAGCGACAGCGCCAGCGCCGGCGCGAACCATGCCGG
CGCCGGCGCAAGCAGCATGTTGCCAGAGGGAAGAGCACTCCATTCAGACG
CGACCAACCTGCCTTATGGAACTCGACTGGGTGCGGCGCTCGCCCATCGC
CTTTCGCCGGGCATGGAGGTGACTGTCTGCGGGGCGGTGCAGCTTCGGCG
GGTCATGGCGGACGCGCAGGGGTCCGCCGGTCACCAGCGACACGGCAGGA
GCAGCGGCAGCAGCAATTCAGCGGCGGCAGCGGCGGCGCTGACGCGGGCA
GCGATGGCGGCGGCGGGCAGAGCCGGCGTGCTGTGCGCACGCCTTGATGC
CGCAGCCGGCTTTGCCCGCGTCGCTCTCCATCCCAGCGCCGACGGCAGAA
GGAGGAGCGGTGGCGGCAGCGGCAGTGGTTCTGGCAGTGGCGGCAGGAAC
GGCGGCGGCGACGGCGGCGGCGGCGGCGGCGGCGGCAACTTCAAAGGTGG
CATCACCGCGGGCAGAACGGCGCTGGCTCACGTTGCAGAACTGCCATTGG
CAGCACTCTTCGCGACTCCCTCCGCGGCCGAGACACAGTGGCGAGACGTC
GACACCGGCTCGCTGGTCCGCGTCGCTGGAACGGACTGGCTGGCACACGT
CGCAGCGCATGCTACCTTCTCTGGTGCCTTCGCGGCGCTGGGGACAGCAG
GAGCTGTTGCCGCAACCTTCGCTGACCCCCGCCTTGCCGAGCGCGAGGCG
GTCGTTGTGCAGAAAGCATGGCGTGTTGGTGATGGCTTCGGCGGCAACAG
CGGCGGCGGCGAAAATGCCGGGCTCGGCGGCGACGGCGGCGGCGGCGGCG
GCAGCAAAGCTAACGGCACAGGGTGGCTGCGCGTACGGACGGCGGCGGGT
ATCGAAGGCGATGTGCCTGTGCAGGCGATCACTATCCTGGCGCCGCCGCC
GCCGCCGCATGGGAGCGAAAAAAGCCGAGCGGCGGAGGCTCGGGCGTCAA
AAGCATCCTGTCCTCTAGCTATCGCCGGGATGGGTCGGGTTGCTGTGGGC
ACAACTGCTGCAGTGAAGGCACAGAGGACCGCGCGGGATCATACGAAGCT
CCGCGGCAGCAGCCGCGATGATACTGCCGCCAGCCGCTCCGACGGAGCTG
CTGAAATGCTGAACTCACGCCCGCCGCCGGCGCTGAGCTCGGCCTTTCGT
GCGCGGGGGATACGAGTGCCCGCACCAGCAGCGGCCATCGCGAGTGAGGA
GGGGACTGAAGGCGACAGAGAGATGGCAGCTCCTGCGCCGCGTAACGGCG
GTGGCGATGTCACTGTAATATCCGCAGGTGCGGGTCGTATCCGCGGCGGT
TCCGCTTCTGCCACCGGGAGCGCCGGAGCAGATGCCACATCTCGCAGCGC
GCATGGTGTACGGTTGGGTACGACGGTGGCGGCACGGCTGCGGCGGCCGC
TCTTCCGGGAGGATGCTGTTGCGACCGCCGCCGCCACCTCCGCAACGTCC
GCCCCCGCGCTCGCCGCCTCTGCAGCAGCGATGGACTTTGGTTACCGCCT
CGATGGCGGAACCGCGAGCGAACAGCGCCTACAGCAACAGCAGCAGCTGC
TGCAACTGTCAGGTGACAGAGCGGCTGCAACCGGCGGGCCGGGAAAAGCT
TTCACCGGAGCCAGGACGGCGGCAGCGATAGCGGCAGCGGCGGCAGCAGC
GGCGCTGCGGCGAGATGGCCGAGAGCGCGGAGCAGCAGGGCCCGGAGCCG
GGGTAAGTGAAGGCGCCGGCAAAGAAAGGAACTCTGCAAAAGATGTTAGA
GGTGCATCGCTTGCCGCTCCCCCGATGTCTGGGTCGCAACTGCCGCAGCC
ATCGCCATTCCTGCAGCCCCTGCAACTGGAAGCCGGCCGGCAAAGGCTGC
GAAGCGGAACAGGCGCTCGGGTCTCGTCCGATGTTAAAGGCGGTGGCTCT
AAGGCAGGGGCAGTGGCGCTGCACGAAGCCGGCATATATTTTGCGCTGCC
GCTGCCGGCACGTACGTCGGCCGCCGCCGCGGTACGGCGACCAAATATCG
GACGCCCCCGTGCTGCTGTGGCAGCGACTGCAGCGGCAGCGACAGCGGCG
ATAGGACCGACTATACCAGTTTCCGCCGCCTCCGCCGCCGCCGCCGTAGC
GGGCGCAGCCAGACCGGCACCGGCACCACCGCCACAGCCACAACCATGGC
GGCCCGGCGGCAGCGGACTACCGGTGCGGCCGGAGGAAGACATTGCGACT
GTCCGCGCGAGGAACCACCGCGTGGCGCGCGCCGTGGCGCGCGAGAATGC
GGCGCGGCGCGAGGCAGAGTTGAGCGGGTGGCAGCGCCTCTTCTTCCCGG
CGGCAGGCGGCTTCAGCGCCGCCTCCGGAGCAGCGGCAGGTAGCCGGGGC
GGCAGCCGCAATGCTAGCCGAAACGGCAGTGGCGGCGGCGGAGGAGGAGC
GAGCGGCCTGCTTTTCGACCCGAAAGCGTGGCTTGCAAAGCACCGGAAAG
AGCAAGAAGCGCAGGCGGTGGCTGCGGCGGTGTTATCTGCGGCTCTGCGA
CAGCCGGAAGAACAAAAAGACGGCGAGTTACATGGCGGCGGCGGCAAGGG
CGGCGGAGGCGGCGGCGGCAATGCAGCCGGCGTGAGCGATCAGCTTCACC
AGCAGCAGGAGGTGCTGCCTTCCGAGGAGGCCGTGCTGATCAATGATGGC
GTGCAGGCGGTCATCGACAGCTTATTGCGTGGGCGTTTGCGGCGCCCGGG
GCGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7073:3..3209-

>mRNA_P-wetherbeei_contig7073.1.1 ID=mRNA_P-wetherbeei_contig7073.1.1|Name=mRNA_P-wetherbeei_contig7073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2595bp|location=Sequence derived from alignment at P-wetherbeei_contig7073:3..3209- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGTGACTGTCTGCGGGGCGGTGCAGCTTCGGCGGGTCATGGCGGA
CGCGCAGGGGTCCGCCGGTCACCAGCGACACGGCAGGAGCAGCGGCAGCA
GCAATTCAGCGGCGGCAGCGGCGGCGCTGACGCGGGCAGCGATGGCGGCG
GCGGGCAGAGCCGGCGTGCTGTGCGCACGCCTTGATGCCGCAGCCGGCTT
TGCCCGCGTCGCTCTCCATCCCAGCGCCGACGGCAGAAGGAGGAGCGGTG
GCGGCAGCGGCAGTGGTTCTGGCAGTGGCGGCAGGAACGGCGGCGGCGAC
GGCGGCGGCGGCGGCGGCGGCGGCAACTTCAAAGGTGGCATCACCGCGGG
CAGAACGGCGCTGGCTCACGTTGCAGAACTGCCATTGGCAGCACTCTTCG
CGACTCCCTCCGCGGCCGAGACACAGTGGCGAGACGTCGACACCGGCTCG
CTGGTCCGCGTCGCTGGAACGGACTGGCTGGCACACGTCGCAGCGCATGC
TACCTTCTCTGGTGCCTTCGCGGCGCTGGGGACAGCAGGAGCTGTTGCCG
CAACCTTCGCTGACCCCCGCCTTGCCGAGCGCGAGGCGGTCGTTGTGCAG
AAAGCATGGCGTGTTGGTGATGGCTTCGGCGGCAACAGCGGCGGCGGCGA
AAATGCCGGGCTCGGCGGCGACGGCGGCGGCGGCGGCGGCAGCAAAGCTA
ACGGCACAGGGTGGCTGCGCGTACGGACGGCGGCGGGTATCGAAGGCGAT
GTGCCTGTGCAGGCGATCACTATCCTGGCGCCGCCGCCGCCGCCGCATGG
GAGCGAAAAAAGCCGAGCGGCGGAGGCTCGGGCGTCAAAAGCATCCTGTC
CTCTAGCTATCGCCGGGATGGGTCGGGTTGCTGTGGGCACAACTGCTGCA
GTGAAGGCACAGAGGACCGCGCGGGATCATACGAAGCTCCGCGGCAGCAG
CCGCGATGATACTGCCGCCAGCCGCTCCGACGGAGCTGCTGAAATGCTGA
ACTCACGCCCGCCGCCGGCGCTGAGCTCGGCCTTTCGTGCGCGGGGGATA
CGAGTGCCCGCACCAGCAGCGGCCATCGCGAGTGAGGAGGGGACTGAAGG
CGACAGAGAGATGGCAGCTCCTGCGCCGCGTAACGGCGGTGGCGATGTCA
CTGTAATATCCGCAGGTGCGGGTCGTATCCGCGGCGGTTCCGCTTCTGCC
ACCGGGAGCGCCGGAGCAGATGCCACATCTCGCAGCGCGCATGGTGTACG
GTTGGGTACGACGGTGGCGGCACGGCTGCGGCGGCCGCTCTTCCGGGAGG
ATGCTGTTGCGACCGCCGCCGCCACCTCCGCAACGTCCGCCCCCGCGCTC
GCCGCCTCTGCAGCAGCGATGGACTTTGGTTACCGCCTCGATGGCGGAAC
CGCGAGCGAACAGCGCCTACAGCAACAGCAGCAGCTGCTGCAACTGTCAG
GTGACAGAGCGGCTGCAACCGGCGGGCCGGGAAAAGCTTTCACCGGAGCC
AGGACGGCGGCAGCGATAGCGGCAGCGGCGGCAGCAGCGGCGCTGCGGCG
AGATGGCCGAGAGCGCGGAGCAGCAGGGCCCGGAGCCGGGGTAAGTGAAG
GCGCCGGCAAAGAAAGGAACTCTGCAAAAGATGTTAGAGGTGCATCGCTT
GCCGCTCCCCCGATGTCTGGGTCGCAACTGCCGCAGCCATCGCCATTCCT
GCAGCCCCTGCAACTGGAAGCCGGCCGGCAAAGGCTGCGAAGCGGAACAG
GCGCTCGGGTCTCGTCCGATGTTAAAGGCGGTGGCTCTAAGGCAGGGGCA
GTGGCGCTGCACGAAGCCGGCATATATTTTGCGCTGCCGCTGCCGGCACG
TACGTCGGCCGCCGCCGCGGTACGGCGACCAAATATCGGACGCCCCCGTG
CTGCTGTGGCAGCGACTGCAGCGGCAGCGACAGCGGCGATAGGACCGACT
ATACCAGTTTCCGCCGCCTCCGCCGCCGCCGCCGTAGCGGGCGCAGCCAG
ACCGGCACCGGCACCACCGCCACAGCCACAACCATGGCGGCCCGGCGGCA
GCGGACTACCGGTGCGGCCGGAGGAAGACATTGCGACTGTCCGCGCGAGG
AACCACCGCGTGGCGCGCGCCGTGGCGCGCGAGAATGCGGCGCGGCGCGA
GGCAGAGTTGAGCGGGTGGCAGCGCCTCTTCTTCCCGGCGGCAGGCGGCT
TCAGCGCCGCCTCCGGAGCAGCGGCAGGTAGCCGGGGCGGCAGCCGCAAT
GCTAGCCGAAACGGCAGTGGCGGCGGCGGAGGAGGAGCGAGCGGCCTGCT
TTTCGACCCGAAAGCGTGGCTTGCAAAGCACCGGAAAGAGCAAGAAGCGC
AGGCGGTGGCTGCGGCGGTGTTATCTGCGGCTCTGCGACAGCCGGAAGAA
CAAAAAGACGGCGAGTTACATGGCGGCGGCGGCAAGGGCGGCGGAGGCGG
CGGCGGCAATGCAGCCGGCGTGAGCGATCAGCTTCACCAGCAGCAGGAGG
TGCTGCCTTCCGAGGAGGCCGTGCTGATCAATGATGGCGTGCAGGCGGTC
ATCGACAGCTTATTGCGTGGGCGTTTGCGGCGCCCGGGGCGGAGG
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