mRNA_P-wetherbeei_contig707.4.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig707.4.2
Unique NamemRNA_P-wetherbeei_contig707.4.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A835YR02_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR02_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.530e-53
Identity = 98/126 (77.78%), Postives = 113/126 (89.68%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG DQ+SVT R+PVLFFCVINQGLF AL+TINSFPGERML+LRERAAGTY+ SAYF AKVL+ET+ Q+ILP++F+ IVYFL+GL+   S FFIF+ FM LCSLAATSLAL+VSAFCRTTDLSVTVL
Sbjct:  452 IGTDQKSVTLRKPVLFFCVINQGLFSALSTINSFPGERMLSLRERAAGTYYTSAYFMAKVLAETVMQIILPILFTCIVYFLIGLQNEASKFFIFMAFMVLCSLAATSLALLVSAFCRTTDLSVTVL 577
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A836CJS3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS3_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.630e-49
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG DQ SV  R+PVLFFCVINQGLF AL  INSFPGERML+LRERAAGTY+ SAYF AK+L+ET  Q++LP+IFS +VY++VGL+P  S FFIF+ FM LCSL ATSLAL+VSAF RTTDLSVTVL
Sbjct:  402 IGTDQHSVVLRKPVLFFCVINQGLFSALAVINSFPGERMLSLRERAAGTYYTSAYFMAKMLAETALQIVLPIIFSCLVYWIVGLQPVASKFFIFMGFMILCSLGATSLALLVSAFARTTDLSVTVL 527
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A813TIU8_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813TIU8_9BILA)

HSP 1 Score: 173 bits (439), Expect = 2.640e-48
Identity = 89/126 (70.63%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG  Q SV RRQPVLFFC +NQG+FGALT IN+FP ER L LRERA+GTYFASAYF AK++ ETL QL +P+IFS++VYFL+GL+P+   FFIF+ FM LCS+A+TSLALM+SA C+TTDLSVTVL
Sbjct:  471 IGIGQRSVIRRQPVLFFCSVNQGVFGALTVINTFPVERALTLRERASGTYFASAYFIAKIIVETLVQLPMPIIFSIVVYFLIGLQPTAGKFFIFMLFMLLCSMASTSLALMISAICKTTDLSVTVL 596
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A8J4BKZ9_9CHLO (ABC2_membrane domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4BKZ9_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 9.320e-48
Identity = 88/126 (69.84%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG  Q SVTRRQPVLFF VINQG+FGAL  INSFP ERML+LRERAAGTY  SAYF AK+ +ET++QL  P++FS +VYFLVG +   S FFIF+ FM LCSL+ATSLAL VSA  RTTD++VTVL
Sbjct:   96 IGTSQSSVTRRQPVLFFTVINQGMFGALIVINSFPSERMLSLRERAAGTYHVSAYFLAKITAETVSQLPAPILFSCVVYFLVGFQAVASKFFIFMAFMVLCSLSATSLALAVSAIARTTDMAVTVL 221
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A815H7M3_9BILA (Hypothetical protein n=19 Tax=Rotaria TaxID=231623 RepID=A0A815H7M3_9BILA)

HSP 1 Score: 171 bits (433), Expect = 2.520e-47
Identity = 87/126 (69.05%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG  Q S+ RRQPVLFFC+INQG+FGALT INSFP ER L LRERAAGTYFASAYF AK+LS+TL QL +P++FS +VY+L+GL+P  + FFIF+ F+ LCS+ +TS+ALM+SA CRTT LSVTVL
Sbjct:  501 IGTSQTSILRRQPVLFFCIINQGVFGALTVINSFPVERTLTLRERAAGTYFASAYFVAKILSDTLVQLPIPIVFSCVVYYLIGLQPEAAKFFIFMIFIILCSVTSTSMALMISALCRTTALSVTVL 626
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A820HZI6_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820HZI6_9BILA)

HSP 1 Score: 163 bits (412), Expect = 2.530e-47
Identity = 85/126 (67.46%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG+ Q S+ RR PVLFFC +NQG+F AL  INSFP ER L LRERA+GTYFASAYF AK++++TL Q+ +P+IFS IVYFLVG   +T+ FFIF  FM LCS+A+TSLALMVSA C+TTD+SVTVL
Sbjct:  167 IGNTQTSIVRRGPVLFFCAVNQGIFDALMVINSFPVERALTLRERASGTYFASAYFTAKIIADTLVQIPVPIIFSCIVYFLVGFHYTTAKFFIFTLFMLLCSIASTSLALMVSAICKTTDMSVTVL 292
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A8J4BJG2_9CHLO (ABC2_membrane domain-containing protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4BJG2_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 6.900e-47
Identity = 88/126 (69.84%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG  Q SVTRRQPVLFF VINQG+FGAL  INSFP ERML+LRERAAGTY  SAYF AK+ +ET++QL  P++FS +VYFLVG +   S FFIF+ FM LCSL+ATSLAL VSA  RTTD++VTVL
Sbjct:   96 IGTSQSSVTRRQPVLFFTVINQGMFGALIVINSFPSERMLSLRERAAGTYHVSAYFLAKITAETVSQLPAPILFSCVVYFLVGFQAVASKFFIFMAFMVLCSLSATSLALAVSAIARTTDMAVTVL 221
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A813PNY9_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A813PNY9_ADIRI)

HSP 1 Score: 169 bits (428), Expect = 1.270e-46
Identity = 88/126 (69.84%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG +Q SV RR+PV+FFCVINQG+FGALT INSFP ER L LRERA+GTYFASAYF AK++S+TL QL +P+IF+ IVYFL+GL+P    FFIF+ F+ LCS+ +TSLALM+SA CRTT LSVTVL
Sbjct:  502 IGTNQASVVRREPVIFFCVINQGVFGALTVINSFPVERTLTLRERASGTYFASAYFVAKIISDTLVQLPIPIIFTCIVYFLIGLQPVAGKFFIFMLFIVLCSVTSTSLALMISAICRTTALSVTVL 627
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A814E4N7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814E4N7_9BILA)

HSP 1 Score: 166 bits (421), Expect = 1.650e-46
Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG  Q+S+ RRQPVLFFC +NQG+FGALT IN+FP ER L LRERA+GTY ASAYF +K++ ETL QL +P++FS+ VYFL+GL+P   +FF+F+ FM LCS+AATSLALM+SA C+TTDLSV VL
Sbjct:  321 IGTGQKSIIRRQPVLFFCAVNQGIFGALTVINTFPVERALTLRERASGTYLASAYFVSKIIVETLVQLPVPILFSISVYFLIGLQPLPGNFFLFLLFMVLCSMAATSLALMISALCKTTDLSVAVL 446
[Close]
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Match: A0A2K3DJM4_CHLRE (ABC transporter domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DJM4_CHLRE)

HSP 1 Score: 167 bits (423), Expect = 2.380e-46
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:    1 IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTYFASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSLCSLAATSLALMVSAFCRTTDLSVTVL 378
            IG DQ+S  RRQPVLFFCV+NQG+FGAL  INSFP ERML+LRERAAGTY  SAYF AK+ +E L+QL  P++FS IVYFLVGL+P  + FFIF+ FM LCS+AATSLAL VSA  RTTD++VT+L
Sbjct:  395 IGTDQKSAVRRQPVLFFCVVNQGMFGALIVINSFPAERMLSLRERAAGTYHVSAYFLAKITAEALSQLPAPILFSCIVYFLVGLQPVAAKFFIFMGFMILCSVAATSLALAVSALARTTDMAVTIL 520
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig707.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YR02_9STRA4.530e-5377.78P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CJS3_9STRA3.630e-4973.81P-loop containing nucleoside triphosphate hydrolas... [more]
A0A813TIU8_9BILA2.640e-4870.63Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A8J4BKZ9_9CHLO9.320e-4869.84ABC2_membrane domain-containing protein n=3 Tax=Vo... [more]
A0A815H7M3_9BILA2.520e-4769.05Hypothetical protein n=19 Tax=Rotaria TaxID=231623... [more]
A0A820HZI6_9BILA2.530e-4767.46Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
A0A8J4BJG2_9CHLO6.900e-4769.84ABC2_membrane domain-containing protein n=5 Tax=Vo... [more]
A0A813PNY9_ADIRI1.270e-4669.84Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
A0A814E4N7_9BILA1.650e-4666.67Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A2K3DJM4_CHLRE2.380e-4669.84ABC transporter domain-containing protein n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig707contigP-wetherbeei_contig707:7621..8641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3055.EDP03608
PFAMsABC2_membrane,ABC_tran
Model size378
Max annot lvl3041|Chlorophyta
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.62e-47
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota,37YH9@33090|Viridiplantae,34J9N@3041|Chlorophyta
DescriptionABC-2 type transporter
Cds size378
COG categoryQ
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.117066-CDS-P-wetherbeei_contig707:7620..77691683186956.117066-CDS-P-wetherbeei_contig707:7620..7769Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 7621..7769 +
1683186956.1350229-CDS-P-wetherbeei_contig707:7957..79971683186956.1350229-CDS-P-wetherbeei_contig707:7957..7997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 7958..7997 +
1683186956.1481204-CDS-P-wetherbeei_contig707:8197..82701683186956.1481204-CDS-P-wetherbeei_contig707:8197..8270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 8198..8270 +
1683186956.1571996-CDS-P-wetherbeei_contig707:8525..86411683186956.1571996-CDS-P-wetherbeei_contig707:8525..8641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 8526..8641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig707.4.2prot_P-wetherbeei_contig707.4.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig707 7621..8641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig707.4.2

>prot_P-wetherbeei_contig707.4.2 ID=prot_P-wetherbeei_contig707.4.2|Name=mRNA_P-wetherbeei_contig707.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
IGDDQESVTRRQPVLFFCVINQGLFGALTTINSFPGERMLALRERAAGTY
FASAYFCAKVLSETLTQLILPVIFSVIVYFLVGLRPSTSHFFIFVTFMSL
CSLAATSLALMVSAFCRTTDLSVTVL
back to top

mRNA from alignment at P-wetherbeei_contig707:7621..8641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig707.4.2 ID=mRNA_P-wetherbeei_contig707.4.2|Name=mRNA_P-wetherbeei_contig707.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1021bp|location=Sequence derived from alignment at P-wetherbeei_contig707:7621..8641+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGGGGACGACCAGGAGAGCGTGACACGGCGACAGCCGGTGCTGTTCTT
CTGCGTCATCAACCAAGGCCTCTTCGGCGCCCTGACCACCATCAACAGCT
TTCCCGGCGAGCGCATGCTGGCGCTGCGTGAGCGGGCGGCCGGCACCTAG
TGAGTGTCTTCACTTCCTCGCGGGCGAGGCGAGCAGGAGAATTGGGGAGA
GGAGCGGCTAAGCCAGTGTTCGCATTCATTTGAATTGTGAGCTGGCCTGC
CCTCCCCTTGTGTATGTCCTCTGCCCCCGTGACTAACTTCTGCTCTTTCT
GCCTTCCTTGTACGCTTCTATGCCGGCCCGCTCGCAGCTTCGCATCGGCC
TACTTCTGCGCCAAGGTGCTATCCGAGGTAAAAAGGGGATCTCGTCTTCT
TTCTTCGGGCCCGTGGCATGTGCTGTTACCCCACTTTTGCTGCTTGTTAC
CGTCCAGTGCCACCGCGCGTCTATCCGTTCTTCGGGTCGTTGCGAAAATG
ATCTGCTTTGCTGACCCTCACTTTTCCGCCTCCCATCTCTCCTCCTGCCG
CCCCTGCGACCGTTACTGCCATGCCAGACCCTGACGCAGCTGATCCTGCC
GGTCATCTTCTCGGTGATCGTCTACTTCCTCGTCGGCCTTCGCCCGAGCA
GTGAGTCGTTGGCGAAAGGCAGACACGGCTGTTCATGGATTCGTTAAGTT
CAACCATGCCATTCGATCTGGTTCTGTCTAGCATTACGCACGCATCTCTG
CTGCAGCACAACCTGCGCTCTTATTCGATAAAATGCCGCCTCCGCCCCTT
CCGCCATTCCTCCTACTCCAGCTTTTCTTTTTCACCCTTGCCTGCTCACA
ACTGTCCTTTTCTCGTTCTTGGGGGGTCAAAACCGCTCTTTTCACGTCTT
CGCAGCATCGCACTTCTTCATTTTCGTGACGTTCATGTCGCTCTGCTCGC
TGGCGGCGACATCCCTTGCTCTCATGGTCTCCGCCTTCTGCCGGACGACT
GACCTGTCGGTCACCGTCCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig707:7621..8641+

>mRNA_P-wetherbeei_contig707.4.2 ID=mRNA_P-wetherbeei_contig707.4.2|Name=mRNA_P-wetherbeei_contig707.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig707:7621..8641+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGGGGACGACCAGGAGAGCGTGACACGGCGACAGCCGGTGCTGTTCTT
CTGCGTCATCAACCAAGGCCTCTTCGGCGCCCTGACCACCATCAACAGCT
TTCCCGGCGAGCGCATGCTGGCGCTGCGTGAGCGGGCGGCCGGCACCTAC
TTCGCATCGGCCTACTTCTGCGCCAAGGTGCTATCCGAGACCCTGACGCA
GCTGATCCTGCCGGTCATCTTCTCGGTGATCGTCTACTTCCTCGTCGGCC
TTCGCCCGAGCACATCGCACTTCTTCATTTTCGTGACGTTCATGTCGCTC
TGCTCGCTGGCGGCGACATCCCTTGCTCTCATGGTCTCCGCCTTCTGCCG
GACGACTGACCTGTCGGTCACCGTCCTG
back to top