mRNA_P-wetherbeei_contig707.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig707.1.1
Unique NamemRNA_P-wetherbeei_contig707.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig707.1.1 vs. uniprot
Match: D7FML8_ECTSI (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML8_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 4.080e-9
Identity = 97/330 (29.39%), Postives = 142/330 (43.03%), Query Frame = 3 
Query: 1527 LAFGRAPLKSIRRTGNAYGDHRVETLRSVLRAGAGLPLLFPLHDIGYVYPVSSGADDACRNVDREDSGVRKGG----------------SCSSREXXXXXXXXXARDDASDRVASVAALRVGGRMPHFLLAAPADMQADGAGRLDRSDRKNDRFRSGIALDAVGGRSSVVISTVDLPSQLSCISRNVTAVLIVAAGDPGSSSSGGVGSVGIALADAADAVAKTAGWAPALQLALLQLLPEAVADAAGPLSAGTTAASHP-PDVALVGPHLEAFLAPEQSENPSSRPGHHGAPVVRLAAID-VGAAATAALRTAGAAAALIRPDGHIAWLA 2462
            L  GR  L+S+R  G+ YG+ RV  LR +L  G GLPLLFP HD+G+ Y     A  A        SG R  G                  SSR            D+     A+  ++R+GGRMPHF L  P+   +     +D  D+       G+ LD  G  S +  +T +L S        + +VLIV      SS   G+  VG   +  +    +T+  +P + L +    P +   ++       TA + P P +  +  +L+      + E   ++PG     V+ + A+D  G     AL  A   A L+RPDGHIAWLA
Sbjct:  537 LRLGRRQLESLREEGHPYGESRVRDLRRLLAEGGGLPLLFPEHDVGFTYGGHGAALLAA-------SGGRAAGVGPPPTSRSSRPLPAAGFSSRPPAVRRNGQGHGDNTGAFRAAPCSIRLGGRMPHFFLRPPSSSSSSLLSTVDLPDQIR-----GLLLDCFG--SELSSATPELAS--------LASVLIVY-----SSERDGMAMVGTDTSWHS----RTSRSSPLVVLTVSPPSPGSTVSSSISNDQHNTAITSPAPSIENLREYLDY-----REEIVPTQPGW----VLPMRAVDGSGGKLGEALAAARTEAVLLRPDGHIAWLA 826
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig707.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FML8_ECTSI4.080e-929.39Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig707contigP-wetherbeei_contig707:2..2658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FML8
PFAMsFAD_binding_3
Model size2657
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.93e-10
EggNOG OGsCOG0654@1|root,KOG3855@2759|Eukaryota
DescriptionFAD binding
Cds size1392
COG categoryCH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.9362257-UTR-P-wetherbeei_contig707:1..12361683186955.9362257-UTR-P-wetherbeei_contig707:1..1236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig707 2..1236 +
1683186955.9570842-UTR-P-wetherbeei_contig707:2628..26581683186955.9570842-UTR-P-wetherbeei_contig707:2628..2658Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig707 2629..2658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.947802-CDS-P-wetherbeei_contig707:1236..26281683186955.947802-CDS-P-wetherbeei_contig707:1236..2628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 1237..2628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig707.1.1prot_P-wetherbeei_contig707.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig707 1237..2628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig707.1.1

>prot_P-wetherbeei_contig707.1.1 ID=prot_P-wetherbeei_contig707.1.1|Name=mRNA_P-wetherbeei_contig707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=464bp
MWRRCRRYFSCFTLFWMIYSFKKENRPSFGAMLPFPALSRPLSLQPVTLW
LSRAQFLSGSQDAADVASATAASATVTVPVPSTAPPSPALQAAGTAALAF
GRAPLKSIRRTGNAYGDHRVETLRSVLRAGAGLPLLFPLHDIGYVYPVSS
GADDACRNVDREDSGVRKGGSCSSREGGGGGGSGAARDDASDRVASVAAL
RVGGRMPHFLLAAPADMQADGAGRLDRSDRKNDRFRSGIALDAVGGRSSV
VISTVDLPSQLSCISRNVTAVLIVAAGDPGSSSSGGVGSVGIALADAADA
VAKTAGWAPALQLALLQLLPEAVADAAGPLSAGTTAASHPPDVALVGPHL
EAFLAPEQSENPSSRPGHHGAPVVRLAAIDVGAAATAALRTAGAAAALIR
PDGHIAWLAAAQVVAPAGAAGAHAPGPSGAVAAMDFSVWKDRLGRAIAAM
LTRPPHADREWNT*
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mRNA from alignment at P-wetherbeei_contig707:2..2658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig707.1.1 ID=mRNA_P-wetherbeei_contig707.1.1|Name=mRNA_P-wetherbeei_contig707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2657bp|location=Sequence derived from alignment at P-wetherbeei_contig707:2..2658+ (Phaeothamnion wetherbeei SAG_119_79)
AAAATAGAAGAGGGGGTAATTGACACTAGGCAGGAGGTCCGCGCCGTAGA
AGGCGCAAGATCCCGACCCTAAGGCCGTTTTGACCAGCGTGGCGGCCTTT
GGGTTCGTACGCCACCACGTACTTCTCTTTGGTGGTGCGCGACACATGCG
CCGTGCCAACTTTCCTGCCCTGCAGTCTCCGTCTCGTGAACACCATTATT
GCCCGTTCTCGGCGACCGCAGCACCTAATGTTTGCCGTGCTCTGATTTTC
CAGCACCCAGTCGATTTGCCGCGATGTGGAGAGCACTTTGGTGGACAATT
AGTCGGGTCGGGGCTGTACCCAGCGCGGCAGCCGCTATAGCGACGACGCT
GTATAGTTAAAGTACCTGTTTCCGTAGGAGCAGGCGAGAAGGTCTGAGAC
GGCAGTGCCGTCACGGTGGCAACGGGAAGCGAGGGATGCCATTGTCAGTT
TGGGCCAGTAGTGCGTCGTCAGAGCTGACGTCGTGGCACACAAAAATTGC
TGCCGTTGAGGGAAGCTTCGACAACGCCGTGCGCGTGGCGCTTTTTGGTT
TTCGTTTTGCGGTGTTGCTGGTTTTCTAACCAGGGCCCGTAATACCAGCT
TTGGTTCTATGCACTGCAGCTGCAGCGGTTTTGATTGGGGGCCCAGGGAG
CCGTCTCACGCTCTACTCGCTGTTTTCCTTTTTGAAATTCCTTTTGGAAG
GGCCGCTACTGCTTTTATGCGGCGGGGGCGAACCACAAGTTGGTTCAGTT
TATTGAAAGTGAGATCGAAGTCTGGGTCATGTTCTAGTTGCGCCTGCTTG
TGGCGGCGGTTCACCGGCCGACGGCCTCCTGGCGTCCGCCGCCTTGTGCC
GCGACTGTCGCAGCCTGGCGCGTTGGGGGTGCGCACACAGAACGTCGCGC
ATGGGAGACGCTCCGCCTTTTCATGGTTCGCTGTGTACGGATGAAGAGAA
ATATGGGCGGGCGGTGCGTGCGTCTCGGTACGATCTCAACCAGCGTCCTC
AAATATCGCGGTGATTGGGCCACCATTGGAGGCGGCAAGAGTTTGGCGTT
GCCTTGGCGATCATGTTATAAGTTCATGTCCTCTGTTTCCGATTGGTCAG
AATTGTCCTTAGAGACAGCTGGTATGGGGTAGGATTGGGCCCGAACACTG
CGGCGGCAAGCATGAGTGTGAGGCGAGATGTAGACGTGTTTCACAGTTGG
AAGAGTGGAGCTGCAACTATTTTCTCTGTCGGTCTATGTGGAGGCGTTGT
AGACGCTACTTTTCCTGTTTTACCCTTTTTTGGATGATTTACTCCTTCAA
AAAAGAAAATCGGCCGTCTTTTGGAGCGATGCTGCCTTTTCCCGCCCTGT
CCCGACCCCTGTCTCTGCAACCTGTAACTCTTTGGCTTTCTCGTGCGCAG
TTTTTGAGCGGATCACAGGATGCTGCGGACGTGGCTTCGGCGACAGCCGC
GAGCGCAACGGTGACGGTGCCAGTGCCTTCGACGGCGCCGCCGTCGCCGG
CTTTGCAGGCGGCTGGGACGGCGGCGCTGGCCTTCGGCCGGGCGCCGCTG
AAAAGCATCCGGCGGACCGGAAACGCTTACGGCGACCATCGCGTGGAGAC
GCTACGGAGCGTGCTGCGTGCCGGGGCTGGGCTGCCGCTCCTGTTTCCGC
TGCACGACATTGGATATGTATATCCCGTAAGTTCTGGTGCTGACGATGCT
TGCCGCAATGTGGATCGGGAGGATAGCGGGGTTAGGAAGGGCGGCAGCTG
CAGTAGCAGAGAAGGTGGCGGCGGCGGCGGCAGCGGTGCTGCTCGGGATG
ACGCTAGCGACAGGGTAGCGTCTGTTGCGGCGCTGCGTGTCGGGGGCCGG
ATGCCGCACTTCCTCTTGGCGGCACCGGCGGACATGCAAGCTGATGGCGC
TGGCAGATTAGATAGAAGTGATAGGAAGAACGATCGATTTAGGAGTGGCA
TTGCTTTGGATGCCGTCGGTGGCAGGAGCTCGGTCGTCATATCGACGGTG
GACTTGCCTTCGCAGCTTTCGTGCATCAGCAGGAACGTGACGGCCGTTCT
CATCGTCGCAGCGGGCGATCCCGGCAGCAGTAGCAGTGGAGGCGTTGGCT
CGGTGGGCATCGCCCTCGCAGATGCGGCAGACGCCGTAGCGAAGACGGCA
GGTTGGGCGCCGGCGCTTCAGCTGGCGCTGCTTCAGCTGCTGCCGGAGGC
GGTGGCTGATGCGGCAGGGCCGCTGTCAGCGGGAACAACAGCGGCATCAC
ATCCACCTGACGTGGCGCTTGTGGGACCGCATTTGGAGGCATTCTTGGCG
CCGGAACAAAGCGAGAATCCGTCTTCCCGGCCGGGTCATCATGGGGCACC
AGTGGTCCGTTTGGCTGCGATAGATGTCGGCGCCGCCGCGACGGCCGCGC
TGCGGACGGCGGGCGCAGCAGCGGCACTCATTCGACCGGACGGCCACATT
GCATGGCTAGCCGCTGCGCAGGTGGTGGCGCCAGCAGGGGCGGCGGGAGC
GCATGCTCCGGGACCGTCGGGAGCGGTCGCAGCGATGGATTTTTCGGTGT
GGAAAGATCGCCTCGGGCGCGCCATTGCAGCCATGCTCACGAGGCCACCT
CACGCCGACAGAGAATGGAACACTTAACCTGACGCTTAACAGACAAAAGA
ACACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig707:2..2658+

>mRNA_P-wetherbeei_contig707.1.1 ID=mRNA_P-wetherbeei_contig707.1.1|Name=mRNA_P-wetherbeei_contig707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1392bp|location=Sequence derived from alignment at P-wetherbeei_contig707:2..2658+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGAGGCGTTGTAGACGCTACTTTTCCTGTTTTACCCTTTTTTGGAT
GATTTACTCCTTCAAAAAAGAAAATCGGCCGTCTTTTGGAGCGATGCTGC
CTTTTCCCGCCCTGTCCCGACCCCTGTCTCTGCAACCTGTAACTCTTTGG
CTTTCTCGTGCGCAGTTTTTGAGCGGATCACAGGATGCTGCGGACGTGGC
TTCGGCGACAGCCGCGAGCGCAACGGTGACGGTGCCAGTGCCTTCGACGG
CGCCGCCGTCGCCGGCTTTGCAGGCGGCTGGGACGGCGGCGCTGGCCTTC
GGCCGGGCGCCGCTGAAAAGCATCCGGCGGACCGGAAACGCTTACGGCGA
CCATCGCGTGGAGACGCTACGGAGCGTGCTGCGTGCCGGGGCTGGGCTGC
CGCTCCTGTTTCCGCTGCACGACATTGGATATGTATATCCCGTAAGTTCT
GGTGCTGACGATGCTTGCCGCAATGTGGATCGGGAGGATAGCGGGGTTAG
GAAGGGCGGCAGCTGCAGTAGCAGAGAAGGTGGCGGCGGCGGCGGCAGCG
GTGCTGCTCGGGATGACGCTAGCGACAGGGTAGCGTCTGTTGCGGCGCTG
CGTGTCGGGGGCCGGATGCCGCACTTCCTCTTGGCGGCACCGGCGGACAT
GCAAGCTGATGGCGCTGGCAGATTAGATAGAAGTGATAGGAAGAACGATC
GATTTAGGAGTGGCATTGCTTTGGATGCCGTCGGTGGCAGGAGCTCGGTC
GTCATATCGACGGTGGACTTGCCTTCGCAGCTTTCGTGCATCAGCAGGAA
CGTGACGGCCGTTCTCATCGTCGCAGCGGGCGATCCCGGCAGCAGTAGCA
GTGGAGGCGTTGGCTCGGTGGGCATCGCCCTCGCAGATGCGGCAGACGCC
GTAGCGAAGACGGCAGGTTGGGCGCCGGCGCTTCAGCTGGCGCTGCTTCA
GCTGCTGCCGGAGGCGGTGGCTGATGCGGCAGGGCCGCTGTCAGCGGGAA
CAACAGCGGCATCACATCCACCTGACGTGGCGCTTGTGGGACCGCATTTG
GAGGCATTCTTGGCGCCGGAACAAAGCGAGAATCCGTCTTCCCGGCCGGG
TCATCATGGGGCACCAGTGGTCCGTTTGGCTGCGATAGATGTCGGCGCCG
CCGCGACGGCCGCGCTGCGGACGGCGGGCGCAGCAGCGGCACTCATTCGA
CCGGACGGCCACATTGCATGGCTAGCCGCTGCGCAGGTGGTGGCGCCAGC
AGGGGCGGCGGGAGCGCATGCTCCGGGACCGTCGGGAGCGGTCGCAGCGA
TGGATTTTTCGGTGTGGAAAGATCGCCTCGGGCGCGCCATTGCAGCCATG
CTCACGAGGCCACCTCACGCCGACAGAGAATGGAACACTTAA
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