mRNA_P-wetherbeei_contig707.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig707.3.1
Unique NamemRNA_P-wetherbeei_contig707.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig707.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig707contigP-wetherbeei_contig707:4006..5397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size821
Hectar predicted targeting categoryother localisation
Exons2
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.8730571-UTR-P-wetherbeei_contig707:4005..40521683186955.8730571-UTR-P-wetherbeei_contig707:4005..4052Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig707 4006..4052 +
1683186955.9090164-UTR-P-wetherbeei_contig707:5172..53971683186955.9090164-UTR-P-wetherbeei_contig707:5172..5397Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig707 5173..5397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.8843284-CDS-P-wetherbeei_contig707:4052..44961683186955.8843284-CDS-P-wetherbeei_contig707:4052..4496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 4053..4496 +
1683186955.9005487-CDS-P-wetherbeei_contig707:5067..51721683186955.9005487-CDS-P-wetherbeei_contig707:5067..5172Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig707 5068..5172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig707.3.1prot_P-wetherbeei_contig707.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig707 4053..5172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig707.3.1

>prot_P-wetherbeei_contig707.3.1 ID=prot_P-wetherbeei_contig707.3.1|Name=mRNA_P-wetherbeei_contig707.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MFEAPLGHYSAKRSGVILKRVGWAHRTCRTRRPSHARTGRQQWRHGGALK
LEAASLCWFGGTCRLSGERAVVPQLRLGIELILADERVLAEDSEGKAKLK
SKMTTMVDHEAQNQETIRGVGGAPAVSVDDLKAEKLKSPAVLAFKNLKVV
SKAHNRVLLKDVSGQILGGLLAVMGPSGEASQ*
back to top

mRNA from alignment at P-wetherbeei_contig707:4006..5397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig707.3.1 ID=mRNA_P-wetherbeei_contig707.3.1|Name=mRNA_P-wetherbeei_contig707.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1392bp|location=Sequence derived from alignment at P-wetherbeei_contig707:4006..5397+ (Phaeothamnion wetherbeei SAG_119_79)
GGGTGGTCTGCTTGGCAGCAACGTGCAAACAGCAAACAGCGCGCTTTATG
TTCGAAGCCCCCCTTGGTCATTATTCTGCTAAACGGAGCGGTGTAATTTT
GAAAAGGGTGGGCTGGGCGCACCGTACCTGCAGAACACGGCGGCCTAGCC
ATGCGAGGACTGGGCGCCAGCAGTGGCGCCATGGCGGTGCGTTAAAGTTG
GAAGCGGCGAGTTTATGTTGGTTTGGCGGAACGTGCCGTCTTTCCGGGGA
ACGCGCTGTCGTTCCGCAGCTCCGGCTCGGAATAGAATTGATTTTGGCAG
ATGAGAGGGTACTGGCAGAAGACAGTGAGGGTAAAGCAAAGCTGAAATCC
AAGATGACAACAATGGTGGACCATGAGGCGCAGAACCAGGAAACGATTCG
TGGTGTTGGGGGCGCTCCGGCTGTGAGTGTCGACGATTTAAAAGCGGAGA
AACTGAAGTCCCCGGCTGTCTTGGCCTTTAAGAACCTGAAGGTGCGTGAC
GAGAGTTAAAATAACGTCGCATCGCCCATGCACACCCCTTTTGGCGGTGA
ATTTTGGAACGAGGACTTCTTCGCATTCTTGTCGCATACGTATTCTACCG
TTCAATCGGATTGTGTGATTTTCAAGAAAAACCGGGCATTGCTCTCAGCA
GATGCCTTTGCCCAGCACTCATCGCCGCAGATTCGATGGGGGGCATTTTT
CACTTTCTTGTGGACGTTATTCCGGAAAGAACATTGTTATTCCCCCAGCC
GGTCGGTGATTCGGGTTCCGTTGACAACTCATTGTGCATCGAGCTTATTA
CGTAATTGCGTCGCAGAGGAATTTGCCAGTGGTAATCCTCGTGTCCTTCA
TGTCTGGAGCAAAAGTCAAATCAAATTAGTCCAGTTACGAAACAAGAGTG
CTCGAGCCAAGAGAGGCCGAACACGGCAGCACCGACCTCGCTTTGCCTCG
ACGCTCCTGCCTCTATCGGGGCTGCTCCCATTCCCTTGCTTACCCGTCTC
TTTCCTGGTTGGAAATGCCGGGGCCTCCTGTCGTTGTCCCGTGAAACCCG
TTTCCGTCGCAGGTGGTCTCGAAGGCCCACAACCGGGTCCTCCTGAAGGA
TGTCAGTGGCCAGATTCTGGGCGGACTCCTTGCTGTTATGGGCCCAAGCG
GTGAGGCTAGTCAATGAGGAAATTTGGAATTGAGAGGGCCAATTTGACAA
CTGCCTTGGCTGGGAGGTTCTGGCGCTTTTTACCCGGTGGCCCGGAGAAA
GGCCCTTCGTCTGCACGTCGCCCTTGCATGCCGTGCGGCAGTGCCGCCCT
GCCTGCTGAACGCGATGCGTTTCCCGATGCGCCTGTCGAAGGCGCTTCGC
CAAAACAGTTGCTGAACAGATCCCCTTCCTCCAGGAAACCGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig707:4006..5397+

>mRNA_P-wetherbeei_contig707.3.1 ID=mRNA_P-wetherbeei_contig707.3.1|Name=mRNA_P-wetherbeei_contig707.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig707:4006..5397+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGAAGCCCCCCTTGGTCATTATTCTGCTAAACGGAGCGGTGTAAT
TTTGAAAAGGGTGGGCTGGGCGCACCGTACCTGCAGAACACGGCGGCCTA
GCCATGCGAGGACTGGGCGCCAGCAGTGGCGCCATGGCGGTGCGTTAAAG
TTGGAAGCGGCGAGTTTATGTTGGTTTGGCGGAACGTGCCGTCTTTCCGG
GGAACGCGCTGTCGTTCCGCAGCTCCGGCTCGGAATAGAATTGATTTTGG
CAGATGAGAGGGTACTGGCAGAAGACAGTGAGGGTAAAGCAAAGCTGAAA
TCCAAGATGACAACAATGGTGGACCATGAGGCGCAGAACCAGGAAACGAT
TCGTGGTGTTGGGGGCGCTCCGGCTGTGAGTGTCGACGATTTAAAAGCGG
AGAAACTGAAGTCCCCGGCTGTCTTGGCCTTTAAGAACCTGAAGGTGGTC
TCGAAGGCCCACAACCGGGTCCTCCTGAAGGATGTCAGTGGCCAGATTCT
GGGCGGACTCCTTGCTGTTATGGGCCCAAGCGGTGAGGCTAGTCAATGA
back to top