mRNA_P-wetherbeei_contig7060.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7060.1.1
Unique NamemRNA_P-wetherbeei_contig7060.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7060.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7060contigP-wetherbeei_contig7060:666..1689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1024
Hectar predicted targeting categoryother localisation
Exons1
Cds size771
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.4159625-UTR-P-wetherbeei_contig7060:665..7761683186955.4159625-UTR-P-wetherbeei_contig7060:665..776Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7060 666..776 +
1683186955.434187-UTR-P-wetherbeei_contig7060:1547..16891683186955.434187-UTR-P-wetherbeei_contig7060:1547..1689Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7060 1548..1689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.425457-CDS-P-wetherbeei_contig7060:776..15471683186955.425457-CDS-P-wetherbeei_contig7060:776..1547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7060 777..1547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7060.1.1prot_P-wetherbeei_contig7060.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7060 777..1547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7060.1.1

>prot_P-wetherbeei_contig7060.1.1 ID=prot_P-wetherbeei_contig7060.1.1|Name=mRNA_P-wetherbeei_contig7060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MTGDQVRLIMRTAKRPGPNFCAVSSVADLADLKVIAVNCGPFWLRSSMQA
NVDYVAASVVKSDAFPSARQIVNYSGFCRCRWQCQWCRRRQCRCRCRCCR
RRRCRVLPTLPTPPVPPVLSVPLHGLTPLRRGGGKAGGSRRQPGGDAVLA
AGQISLFSALAPRRWRRRQRRPRRWQLQRYWRGQRRGRGRWRRRRRREQR
PRWKQRHGRWQLRDAAAGAAGRQAAAASRSAGAFRAVAVATTAIAAAAMT
GKRTTR*
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mRNA from alignment at P-wetherbeei_contig7060:666..1689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7060.1.1 ID=mRNA_P-wetherbeei_contig7060.1.1|Name=mRNA_P-wetherbeei_contig7060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-wetherbeei_contig7060:666..1689+ (Phaeothamnion wetherbeei SAG_119_79)
TGTCGCGGCTGCCACCGTCGTGCTGCTGGCAGGGAGCACGGTCGAGATTG
GCGGACCCGCCACACCTCCCTCGGCCTCTACCTCACAAAGGAGGAAGGAG
CAGCGGACGCGATGACCGGCGATCAGGTCCGACTGATCATGCGAACCGCC
AAGCGACCCGGCCCGAACTTTTGCGCGGTCTCCTCCGTCGCCGACTTGGC
CGACCTCAAGGTGATCGCAGTCAACTGCGGTCCGTTTTGGCTGCGGTCGT
CGATGCAAGCCAATGTAGACTATGTTGCGGCCAGCGTCGTGAAGTCAGAT
GCGTTCCCTTCTGCCCGACAAATCGTCAACTACTCCGGCTTCTGCCGCTG
CCGTTGGCAGTGCCAGTGGTGCCGGCGCCGCCAGTGCCGCTGCCGATGCC
GGTGCTGCCGACGCCGCCGGTGCCGTGTGCTGCCGACGCTGCCGACGCCA
CCAGTGCCGCCGGTGCTGTCGGTGCCTCTGCACGGCCTGACGCCGCTGCG
ACGGGGTGGAGGGAAGGCCGGCGGCTCCCGGCGGCAGCCGGGTGGTGACG
CGGTGTTAGCAGCGGGCCAGATTTCCCTTTTTTCGGCACTGGCGCCTCGG
CGATGGCGGCGGCGGCAACGCCGACCGCGGCGATGGCAGCTCCAGAGGTA
CTGGAGAGGACAACGGCGAGGTCGGGGGCGATGGCGGCGGCGGAGGCGAC
GAGAGCAACGGCCGCGGTGGAAGCAACGCCACGGCCGGTGGCAGCTGCGC
GATGCAGCGGCGGGGGCTGCTGGGAGGCAAGCGGCAGCGGCGTCAAGAAG
CGCCGGTGCATTCCGAGCGGTAGCGGTCGCGACGACAGCGATAGCGGCGG
CGGCGATGACTGGGAAGAGAACGACGAGGTAGACGTGTCTTGGAACGTGC
GCCGCAGAGACTGGCCAATGCTTAAAGCCTGGCTCGCGGCGCTTGATCTT
ACAGAATTGAAGATGGCAACGCAGAAGGGAAGAACCTCGTTGTCCGCACC
AGAAGACATTATTTTGAACCTGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7060:666..1689+

>mRNA_P-wetherbeei_contig7060.1.1 ID=mRNA_P-wetherbeei_contig7060.1.1|Name=mRNA_P-wetherbeei_contig7060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig7060:666..1689+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCGATCAGGTCCGACTGATCATGCGAACCGCCAAGCGACCCGG
CCCGAACTTTTGCGCGGTCTCCTCCGTCGCCGACTTGGCCGACCTCAAGG
TGATCGCAGTCAACTGCGGTCCGTTTTGGCTGCGGTCGTCGATGCAAGCC
AATGTAGACTATGTTGCGGCCAGCGTCGTGAAGTCAGATGCGTTCCCTTC
TGCCCGACAAATCGTCAACTACTCCGGCTTCTGCCGCTGCCGTTGGCAGT
GCCAGTGGTGCCGGCGCCGCCAGTGCCGCTGCCGATGCCGGTGCTGCCGA
CGCCGCCGGTGCCGTGTGCTGCCGACGCTGCCGACGCCACCAGTGCCGCC
GGTGCTGTCGGTGCCTCTGCACGGCCTGACGCCGCTGCGACGGGGTGGAG
GGAAGGCCGGCGGCTCCCGGCGGCAGCCGGGTGGTGACGCGGTGTTAGCA
GCGGGCCAGATTTCCCTTTTTTCGGCACTGGCGCCTCGGCGATGGCGGCG
GCGGCAACGCCGACCGCGGCGATGGCAGCTCCAGAGGTACTGGAGAGGAC
AACGGCGAGGTCGGGGGCGATGGCGGCGGCGGAGGCGACGAGAGCAACGG
CCGCGGTGGAAGCAACGCCACGGCCGGTGGCAGCTGCGCGATGCAGCGGC
GGGGGCTGCTGGGAGGCAAGCGGCAGCGGCGTCAAGAAGCGCCGGTGCAT
TCCGAGCGGTAGCGGTCGCGACGACAGCGATAGCGGCGGCGGCGATGACT
GGGAAGAGAACGACGAGGTAG
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